View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18513_low_3 (Length: 637)
Name: NF18513_low_3
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18513_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 17 - 627
Target Start/End: Complemental strand, 25702271 - 25701655
Alignment:
| Q |
17 |
aacgtcaaaatagctgcaaaattggttttaattcgtttccgttttaaca------acaaaacaacggcgacaaaaagttgttacacaccgaaatgccctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25702271 |
aacgtcaaaatagctgcaaaattggttataatttgtttccgttttaacagagtaaacaaaacaacggcgacaaaaagttgttacacaccgaaatgccctt |
25702172 |
T |
|
| Q |
111 |
ccacctatgacaaaatgcgtttcctaaacaaaaagagcaagaatttatggataaaataaattttttactaaccttatctctctctggttttctctcatct |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25702171 |
ccgcctatgacaaaatgcgtttcctaaacaaaaagagcaagaatttatggataaaataaattttttactaaccttatctctctctggttttctctcatct |
25702072 |
T |
|
| Q |
211 |
gttgttctatgcgtgcttgcttattcttcctatttgactgttttatggaatctgtgtgatagtaaaaataattttcttctattaagtaggacgcgaaaga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25702071 |
gttgttctatgcgtgcttgcttattcttcctatttgagtgttttatggaatctgtgtgatagtaaaaataattttcttctattaagtaggacgtgaaaga |
25701972 |
T |
|
| Q |
311 |
acaatcacacaaaattaaaacaatatgttccttctccataaaaaactaagttgttccttgctaaccaaaaacccacacaacttataaccatacgatatgc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25701971 |
acaatcacacaaaattaaaacaatatgttccttctccataaaaaactaagttgttccttgctaaccaaaaacccacacaatttataaccatacgatatgc |
25701872 |
T |
|
| Q |
411 |
ttccactttctccacaacaactgctattgaacaggcttattaaaaaggttgaatgaatttgggattgagtctaattaccaatgaactgacaagcttacac |
510 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25701871 |
ttccactttctccacaacaacttctattgaacaggcttattaaaaaggttgaatgaatttgggattgagtctaattaccaatgaactgacaagcttacac |
25701772 |
T |
|
| Q |
511 |
gaacgatggcattttgccttggcctttaagaaatcgctggatcaactgcatggcagatgaaatattttcaaaaaaggtaaccattgtgcgtatagagtgg |
610 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25701771 |
gaacaatggcattgtgccttggcctttaagaaatcgctggatcaactgcatggcagatgaaatattttcaaaaaaggtaaccattgtgcatatagagtgg |
25701672 |
T |
|
| Q |
611 |
ctattttggatcttcat |
627 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25701671 |
ctattttggatcttcat |
25701655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University