View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18513_low_4 (Length: 540)
Name: NF18513_low_4
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18513_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 205 - 483
Target Start/End: Complemental strand, 9395351 - 9395077
Alignment:
| Q |
205 |
taatatttttataatgtattaaattcttactctttggtccccattaacataggataggagtggaaaattacttcactccatttccatgaacaccgtnnnn |
304 |
Q |
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| T |
9395351 |
taatatttttataatgtattaaattcttactctttggtccccattaaca----ataggagtggaaaattacttcactctatttccattcacaccgtaaaa |
9395256 |
T |
|
| Q |
305 |
nnnncatttaataatttccattcacactgagcgggttcaagtgcgggaaatgaaaagtagtcaaaattaaaagcgcactattcaattcattttcccgctt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
9395255 |
aaaacatttaataatttccattcacactgagcgggttcaagtgcgggaaatgaaaagtagtcaaaattaaaagtgcacgattcaattcattttcccgctt |
9395156 |
T |
|
| Q |
405 |
cagttcaaaaccgcttcttttcttctctttcatttacaataatcgcnnnnnnncttcacagctttcactattcaccttc |
483 |
Q |
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| T |
9395155 |
cagttcaaaaccgcttcttttcttctctttcatttataataatcgctttttttgttcacagctttcactattcaccttc |
9395077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 9395678 - 9395479
Alignment:
| Q |
7 |
tcgaagaatatcttaacccacgtcctttttacaaaggaagtctatctcagaaactccttaagccaaaatgtaatacatgacttttgttagaataaaccca |
106 |
Q |
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| T |
9395678 |
tcgaaaaatatctttacccacgtcctttttacaaaggaattctatctctgaaactccctaagacaaaatgtaatacatgacttttgttagaataaaccca |
9395579 |
T |
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| Q |
107 |
ctgaaagtctatatccacacctttggaaaaaagacattcttttgttcttgcgataaagacaataccaatgggccaaattgcaattaacgtttaaataata |
206 |
Q |
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| T |
9395578 |
ctgaaggtctatatccacacctttggaaaaaagacattcttttgttctttcgatagagacaataccaatgggccaaattgcaattgacgtttaaataata |
9395479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 342 - 483
Target Start/End: Complemental strand, 31944723 - 31944578
Alignment:
| Q |
342 |
caagtgcgggaaatgaaaagtagtcaaaattaaaagcgcactattcaattcattttcccgcttcagttcaaaaccgct-----tcttttcttctctttca |
436 |
Q |
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||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| || ||||| ||| |||| |||||||||||| |
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| T |
31944723 |
caagtgctggaaatgaaaagtagcgaaaattaaaagcgcaatattcaattcattttcccgcttcaatttaaaactgcttcttctcttctcttctctttca |
31944624 |
T |
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| Q |
437 |
tttacaataatcgcnnnnnnncttcacagctttcactattcaccttc |
483 |
Q |
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| T |
31944623 |
tttataataatcgc-ttttttcttcacagctttcactatccaccttc |
31944578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 31944843 - 31944758
Alignment:
| Q |
199 |
aaataataatatttttataatgtattaaattcttactctttggtccccattaacataggataggagtggaaaattacttcactccat |
285 |
Q |
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|||||||||| | || ||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||||||||||||| |
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| T |
31944843 |
aaataataatttattaataatatattaaattcttactttttggtccc-actaatataatataggagtggaaaattacttcactccat |
31944758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 406
Target Start/End: Complemental strand, 1342749 - 1342649
Alignment:
| Q |
311 |
tttaataatttccattcacactgagcgggtt---caagtgcgggaaat---gaaaagtagtcaaaattaaaagcgcactattcaattcattttcccgctt |
404 |
Q |
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||||| || ||||||| |||||||||||||| |||||||||||||| ||||||||| |||||| ||||||| |||| |||||||||||||||| |
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| T |
1342749 |
tttaacaaattccatttacactgagcgggttcaacaagtgcgggaaatgaagaaaagtagcgaaaattgtaagcgcaatatt-gattcattttcccgctt |
1342651 |
T |
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| Q |
405 |
ca |
406 |
Q |
| |
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|| |
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| T |
1342650 |
ca |
1342649 |
T |
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