View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18513_low_8 (Length: 366)

Name: NF18513_low_8
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18513_low_8
NF18513_low_8
[»] chr7 (1 HSPs)
chr7 (1-357)||(42414892-42415248)
[»] scaffold0094 (1 HSPs)
scaffold0094 (4-357)||(14856-15206)
[»] chr3 (3 HSPs)
chr3 (11-357)||(53919917-53920266)
chr3 (8-100)||(1929998-1930090)
chr3 (8-125)||(26924303-26924420)
[»] chr2 (2 HSPs)
chr2 (3-208)||(35581538-35581743)
chr2 (39-150)||(29370229-29370340)
[»] chr6 (2 HSPs)
chr6 (8-129)||(1083075-1083197)
chr6 (8-129)||(1085715-1085837)
[»] chr8 (1 HSPs)
chr8 (25-94)||(31385930-31385999)


Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 42415248 - 42414892
Alignment:
Q  1 acgcgactgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagc 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||    
T  42415248 acgcgaccgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttctacaagc 42415149  T
Q  101 accttcgacagtcctaatctgccaagccagtagatggcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtgg 200  Q
    |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42415148 accttcgacagtcctaatctgccaagccaagagatggcatcacgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtgg 42415049  T
Q  201 ctgcctttacgaacatacctcgatgattccgaatgcacatacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42415048 ctgcctttacgaacatacctcgatgattccgaatgcacatacctatcccaaaacagttttgctcctcgaacatggctgcgtccacgttgcatttaacaaa 42414949  T
Q  301 ctcctcatctggtggctgccaaattgctacttgctgctgctgattttgcacaggttc 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42414948 ctcctcatctggtggctgccaaattgctacttgctgctgctgattttgcacaggttc 42414892  T

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Target: scaffold0094 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 357
Target Start/End: Complemental strand, 15206 - 14856
Alignment:
Q  4 cgactgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcacc 103  Q
    |||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  15206 cgaccgacattcggatatgatac---caaactccgcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttctataagcacc 15110  T
Q  104 ttcgacagtcctaatctgccaagccagtagatggcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctg 203  Q
    ||||||||||||||||| ||||||||  |||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15109 ttcgacagtcctaatcttccaagccaagagatgaaatcacgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgcggctg 15010  T
Q  204 cctttacgaacatacctcgatgattccgaatgcacatacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||     
T  15009 cctttacgaacatacctcgatgattccgaatgcacatacctatcccaaaatagttttgctcctcgaacatggctgcgtccacgttgcatttaacaaactt 14910  T
Q  304 ctcatctggtggctgccaaattgctacttgctgctgctgattttgcacaggttc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14909 ctcatctggtggctgccaaattgctacttgctgctgctgattttgcacaggttc 14856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 53920266 - 53919917
Alignment:
Q  11 cattcggatatgatactaccaaactccgcttgattgct---attcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcg 107  Q
    ||||| ||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||    
T  53920266 cattcagatatgagactaccaaactccgcttgattgctgctattcctatcaaaaatgctatcaaacactagtttgcaatccagttctataagcaccttcg 53920167  T
Q  108 acagtcctaatctgccaagccagtagatggcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggctgcctt 207  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  53920166 acagtcctaatctgccaagccaagagatggcatcacgcaatccaactgcttcttcttctcgtgggagaggtttgccttcataccaggttgtagctgcctt 53920067  T
Q  208 tacgaacatacctcgatgattccgaatgcacatacctatcccaaaacagttttgctccttgaacatggctgcgtccacgttgcatttaacaaactcctca 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  53920066 tacgaacagacctcgatgattccgaatgcacatacctatcccaaaacagttttgctcctcgaacatggctgcatccacgttgcatttaacaaactcctca 53919967  T
Q  308 tctggtggctgccaaattgctacttgctgctgctgattttgcacaggttc 357  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  53919966 tctggtggctgccaaattgctacttgctgctactgattttgcacaggttc 53919917  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 1930090 - 1929998
Alignment:
Q  8 tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagc 100  Q
    ||||| |||||||| |||||||||||||||| ||||||  ||||||||||||  ||||||||||| ||||  || ||||||||||||||||||    
T  1930090 tgacaatcggatataatactaccaaactccgattgattcatattcctatcaactatgctatcaaccactagcttacaatctagttctataagc 1929998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 26924420 - 26924303
Alignment:
Q  8 tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcg 107  Q
    ||||| || ||||| || |||||||||||  |||| ||| ||||||||||||  ||||||| || |||||   | |||||||||||||||||||||||||    
T  26924420 tgacaatcagatataatgctaccaaactctacttggttggtattcctatcaactatgctataaattactagcgtacaatctagttctataagcaccttcg 26924321  T
Q  108 acagtcctaatctgccaa 125  Q
    | || |||||||| ||||    
T  26924320 ataggcctaatctaccaa 26924303  T

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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 35581538 - 35581743
Alignment:
Q  3 gcgactgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcac 102  Q
    |||| ||||||||  |||||||| ||||||| ||| ||| |||| | |||| |||||  |||||||||||||||| || |||||||||||||||| ||||    
T  35581538 gcgagtgacattcatatatgatattaccaaagtccactttattggtgttcccatcaattatgctatcaactactacttggcaatctagttctatatgcac 35581637  T
Q  103 cttcgacagtcctaatctgccaagccagtagatggcatcatgcaatccaactgcttctgcttctcgtgggagaggtttgccttcataccagattgtggct 202  Q
    ||| ||  ||||| ||   |||||||| || || |||||||| ||||| |||||||| ||||||  |||| |||| |||||||||| |||  ||||||||    
T  35581638 ctttgatggtcctcatagaccaagccaataaatagcatcatgtaatcctactgcttccgcttcttttgggggaggattgccttcatgccaagttgtggct 35581737  T
Q  203 gccttt 208  Q
    ||||||    
T  35581738 gccttt 35581743  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 29370340 - 29370229
Alignment:
Q  39 cttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttctataagcaccttcgacagtcctaatctgccaagccagtagatggc 138  Q
    |||||||  ||||||||||||  ||||||||||| ||||  || ||||||||||||||||||||||| ||||  |||||||| ||||||||  | || ||    
T  29370340 cttgattagtattcctatcaattatgctatcaaccactagcttacaatctagttctataagcacctttgacaagcctaatctaccaagccaagaaatagc 29370241  T
Q  139 atcatgcaatcc 150  Q
    |||||| |||||    
T  29370240 atcatgtaatcc 29370229  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 1083075 - 1083197
Alignment:
Q  8 tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaa-tttgcaatctagttctataagcaccttc 106  Q
    ||||| || |||||||||| |||||||||| |||| ||| | |||||||| |  ||||||||||  || || ||| |||||||||||||||| ||||||     
T  1083075 tgacaatcagatatgatacaaccaaactccacttggttggtcttcctatcgactatgctatcaatcaccaagtttacaatctagttctataaacaccttt 1083174  T
Q  107 gacagtcctaatctgccaagcca 129  Q
    || |  |||||||| ||||||||    
T  1083175 gataagcctaatctaccaagcca 1083197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 1085715 - 1085837
Alignment:
Q  8 tgacattcggatatgatactaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaa-tttgcaatctagttctataagcaccttc 106  Q
    ||||| || |||||||||| |||||||||| |||| ||| | |||||||| |  ||||||||||  || || ||| |||||||||||||||| ||||||     
T  1085715 tgacaatcagatatgatacaaccaaactccacttggttggtcttcctatcgactatgctatcaatcaccaagtttacaatctagttctataaacaccttt 1085814  T
Q  107 gacagtcctaatctgccaagcca 129  Q
    || |  |||||||| ||||||||    
T  1085815 gataagcctaatctaccaagcca 1085837  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 31385930 - 31385999
Alignment:
Q  25 actaccaaactccgcttgattgctattcctatcaaaaatgctatcaactactaatttgcaatctagttct 94  Q
    |||||| ||||||| ||||||| | |||||||||| |||||||||||| ||||  ||||| |||||||||    
T  31385930 actaccgaactccgtttgattggtgttcctatcaagaatgctatcaaccactagcttgcagtctagttct 31385999  T

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