View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18514_high_12 (Length: 250)
Name: NF18514_high_12
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18514_high_12 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 24422098 - 24422336
Alignment:
| Q |
9 |
gataagaacaacaaatatttgtgaaaacgcgtcaaagcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattg |
108 |
Q |
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| T |
24422098 |
gatatgaacaacaaatatttgtgaaaacgcgtcaaagaaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattg |
24422197 |
T |
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| Q |
109 |
agagcccaagtgtgaaacttatgataaagtcaaattaattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaag |
208 |
Q |
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| T |
24422198 |
agagcccaagtgtgaaacatatgataaagtcaaattaattccaaatttgccagaattctctaatgttcaaatggaataaaatatatgtaaaagaagtaag |
24422297 |
T |
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| Q |
209 |
tagtacatttaatccaaatttggactaaatacatataca |
247 |
Q |
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| T |
24422298 |
tagtacatttaatccaaatttggactaaatacatataca |
24422336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 24469668 - 24469437
Alignment:
| Q |
15 |
aacaacaaatatttgtgaaaacgcgtcaaagcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcc |
114 |
Q |
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| T |
24469668 |
aacaacaaaaatatgtgagaacgcgttcgtgcaggtgtatttcaaattagtatatcctttggcttttagagagaagaattggcaagcatgattgagaact |
24469569 |
T |
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| Q |
115 |
caagtgtgaaacttatgataaagtcaaattaattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaagtagtac |
214 |
Q |
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| T |
24469568 |
caagtgtgaaacatttgataaagtcaaattaatttccatttttacagaattttctaatgatcaattgaaataaaatatacgtaaaaga----agtagtgc |
24469473 |
T |
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| Q |
215 |
atttaatccaaatttggactaaatacatatacagtt |
250 |
Q |
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| T |
24469472 |
atttaatcaaaatttggactaaatacatatacagtt |
24469437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 24406887 - 24406959
Alignment:
| Q |
89 |
agaattggcaagcatgattgagagcc-caagtgtgaaacttatgataaagtcaaattaattccaaatttgcca |
160 |
Q |
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| T |
24406887 |
agaactggcaagcatgattgagaacatcaagtgtgaaacaattgataaagtcaaattaattcaaaacttgcca |
24406959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 3928 - 3697
Alignment:
| Q |
15 |
aacaacaaatatttgtgaaaacgcgtcaaagcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcc |
114 |
Q |
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| T |
3928 |
aacaacaaaaatatgtgagaacgcgttcgtgcaggtgtatttcaaattagtatatcctttggcttttagagagaagaattggcaagcatgattgagaact |
3829 |
T |
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| Q |
115 |
caagtgtgaaacttatgataaagtcaaattaattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaagtagtac |
214 |
Q |
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| T |
3828 |
caagtgtgaaacatttgataaagtcaaattaatttccatttttacagaattttctaatgatcaattgaaataaaatatacgtaaaaga----agtagtgc |
3733 |
T |
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| Q |
215 |
atttaatccaaatttggactaaatacatatacagtt |
250 |
Q |
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| T |
3732 |
atttaatcaaaatttggactaaatacatatacagtt |
3697 |
T |
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