View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18514_high_13 (Length: 249)

Name: NF18514_high_13
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18514_high_13
NF18514_high_13
[»] chr1 (3 HSPs)
chr1 (155-246)||(47820668-47820759)
chr1 (166-246)||(41318905-41318985)
chr1 (35-81)||(41318782-41318828)
[»] chr8 (2 HSPs)
chr8 (189-231)||(18604411-18604453)
chr8 (39-85)||(18604257-18604303)
[»] chr7 (2 HSPs)
chr7 (189-231)||(42561275-42561317)
chr7 (39-85)||(42561425-42561471)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 47820668 - 47820759
Alignment:
Q  155 cactcatgtattagtcaattggttcagacatcacataaatggaaaacaaaaggataaaaatggaaaagtagtgatatatttcttctctctcg 246  Q
    |||||| |||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||    
T  47820668 cactcacgtattagtcaattggttcaggcaccgcataaatggaaaacaaaaggataaaaatgcaaaagtagtgatatattttatctctctcg 47820759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 41318905 - 41318985
Alignment:
Q  166 tagtcaattggttcagacatcacataaatggaaaacaaaaggataaaaatggaaaagtagtgatatatttcttctctctcg 246  Q
    ||||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41318905 tagtcgattggtacaggcaccacataaatggaaaacaaaaggataaaaatggaaaagtagtgatatttttcttctctctcg 41318985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 41318782 - 41318828
Alignment:
Q  35 tttgttttaattcaactttactgatttgaaatgataataaccagtgc 81  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
T  41318782 tttgttttaattcatctttactgatttgaaatgataataacaagtgc 41318828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 18604411 - 18604453
Alignment:
Q  189 ataaatggaaaacaaaaggataaaaatggaaaagtagtgatat 231  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  18604411 ataaattgaaaacaaaaggctaaaaatggaaaagtagtgatat 18604453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 18604257 - 18604303
Alignment:
Q  39 ttttaattcaactttactgatttgaaatgataataaccagtgcttat 85  Q
    ||||||||||||||||||||||| |||||| |||||| || ||||||    
T  18604257 ttttaattcaactttactgatttaaaatgacaataactagggcttat 18604303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 42561317 - 42561275
Alignment:
Q  189 ataaatggaaaacaaaaggataaaaatggaaaagtagtgatat 231  Q
    |||||| |||||||||||| ||||||| |||||||||||||||    
T  42561317 ataaattgaaaacaaaaggctaaaaattgaaaagtagtgatat 42561275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 42561471 - 42561425
Alignment:
Q  39 ttttaattcaactttactgatttgaaatgataataaccagtgcttat 85  Q
    ||||||||||||||||||||||| |||||| |||||| || ||||||    
T  42561471 ttttaattcaactttactgatttaaaatgacaataactagggcttat 42561425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University