View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18514_high_7 (Length: 336)
Name: NF18514_high_7
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18514_high_7 |
 | |
|
| [»] scaffold1064 (1 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1064 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 2578 - 2466
Alignment:
| Q |
206 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2578 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacattgaga |
2479 |
T |
|
| Q |
306 |
attgacaacaagt |
318 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2478 |
attgacaacaagt |
2466 |
T |
|
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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 9238848 - 9238771
Alignment:
| Q |
158 |
caaacttacaaaaagccaacctgttattgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9238848 |
caaacttacaaaaagccaacctgttattgcgctctcatcatgtgaatctgagtacattgcaggtacatttgctacatg |
9238771 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 9238624 - 9238538
Alignment:
| Q |
233 |
atgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctc-taacactgagaattgacaacaagt |
318 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9238624 |
atgtcaagctttgtggttggattcatcaatgaaagagattaagtgtgaagtgatgaagcctcttaacactgagaattgacaacaagt |
9238538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 5706756 - 5706866
Alignment:
| Q |
206 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
305 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||| || ||| ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
5706756 |
tgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactgaag |
5706855 |
T |
|
| Q |
306 |
attgacaacaa |
316 |
Q |
| |
|
||||||||||| |
|
|
| T |
5706856 |
attgacaacaa |
5706866 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 9880874 - 9880984
Alignment:
| Q |
206 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
305 |
Q |
| |
|
|||||| |||| ||| |||||| |||| |||||| |||||||||| ||||||| |||||||||||||| |||||| | ||||||||||||| || | | |
|
|
| T |
9880874 |
tgagtatattgtaggaacattttctacttgtcaaactttgtggttagattcagtgatgaaagagcttaaatgtgaaattgtgaagcctctaaccctcata |
9880973 |
T |
|
| Q |
306 |
attgacaacaa |
316 |
Q |
| |
|
||||||||||| |
|
|
| T |
9880974 |
attgacaacaa |
9880984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 316
Target Start/End: Original strand, 26904888 - 26905025
Alignment:
| Q |
174 |
caacctgttattgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagctta |
273 |
Q |
| |
|
|||||||||| ||| || ||||| ||| || |||||| |||||| ||| ||||| |||||||||||| | ||||||||||||| ||||||||| | | |
|
|
| T |
26904888 |
caacctgttagtgcactttcatcctgtgaagttgagtaaattgcaagtatatttgatacatgtcaagccat-tggttggattcagtgatgaaagagatca |
26904986 |
T |
|
| Q |
274 |
agtgtgaagtgatgaagcctctaacactgagaattgacaacaa |
316 |
Q |
| |
|
|||| || ||||| ||||||||||||| ||||||||||| |
|
|
| T |
26904987 |
agtgcga----atgaaacctctaacactgaagattgacaacaa |
26905025 |
T |
|
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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 37787169 - 37787060
Alignment:
| Q |
207 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
306 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || ||| || |||||| ||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
37787169 |
gagtacattgcaggaacatttgctacttgtcaagcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaa |
37787070 |
T |
|
| Q |
307 |
ttgacaacaa |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
37787069 |
ttgacaacaa |
37787060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 301926 - 302035
Alignment:
| Q |
207 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
306 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || ||| || |||||| ||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
301926 |
gagtacattgcaggaacatttgctacttgtcaagcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaa |
302025 |
T |
|
| Q |
307 |
ttgacaacaa |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
302026 |
ttgacaacaa |
302035 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 316
Target Start/End: Complemental strand, 38099723 - 38099596
Alignment:
| Q |
189 |
ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatga |
288 |
Q |
| |
|
||||||| |||| || |||||||||||||||| ||||||| | |||||||||| ||| | |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
38099723 |
ctctcattatgtgaagttgagtacattgcaggtgcatttgcaatatgtcaagctctgttgctggattcaatgatgaaagagctcaagtgtgaagtgatga |
38099624 |
T |
|
| Q |
289 |
agcctctaacactgagaattgacaacaa |
316 |
Q |
| |
|
| ||||||||||||| ||||||||||| |
|
|
| T |
38099623 |
aacctctaacactgaagattgacaacaa |
38099596 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 3461355 - 3461476
Alignment:
| Q |
189 |
ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatga |
288 |
Q |
| |
|
|||||||||||| || |||||||| | ||||| |||||||| |||||||| | ||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
3461355 |
ctctcatcatgtgaagaagagtacataactggtacttttgctacttgtcaagcactatggttggattcagtgatgaaggaatttaagtgtgaagtgatga |
3461454 |
T |
|
| Q |
289 |
agcctctaacactgagaattga |
310 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
3461455 |
agcctctaacactgaaaattga |
3461476 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 18641517 - 18641407
Alignment:
| Q |
206 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
305 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||| || ||| ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
18641517 |
tgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactgaag |
18641418 |
T |
|
| Q |
306 |
attgacaacaa |
316 |
Q |
| |
|
||||||||||| |
|
|
| T |
18641417 |
attgacaacaa |
18641407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 34982935 - 34983047
Alignment:
| Q |
206 |
tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga |
305 |
Q |
| |
|
|||||| |||||| | ||||||||||| ||||||| ||| |||||||| | ||| ||||||||||| |||||||||||| ||||||||||||||| || |
|
|
| T |
34982935 |
tgagtatattgcatgaacatttgctacttgtcaagttttatggttggaattagcgatgaaagagctcaagtgtgaagtggtgaagcctctaacacagatg |
34983034 |
T |
|
| Q |
306 |
attgacaacaagt |
318 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
34983035 |
attgacaataagt |
34983047 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 316
Target Start/End: Original strand, 296659 - 296770
Alignment:
| Q |
205 |
ctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgag |
304 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||| | ||| ||||||||| || |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
296659 |
ctgagtacattgcaggaacatttgctacttttcaagcactatggctggattcagtgataaaagagctcaagtgtgaagtgatgaagcctctgacactgaa |
296758 |
T |
|
| Q |
305 |
aattgacaacaa |
316 |
Q |
| |
|
||||||||||| |
|
|
| T |
296759 |
gattgacaacaa |
296770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 30380226 - 30380349
Alignment:
| Q |
193 |
catcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcc |
292 |
Q |
| |
|
|||||||| || ||| ||||||| ||| || |||||||| ||||||||| | || |||||||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
30380226 |
catcatgtgaagttgaatacattgaaggaacttttgctacttgtcaagctctatgattggattcagtgatgaaagagctcaagtgtgaagtgatgaaacc |
30380325 |
T |
|
| Q |
293 |
tctaacactgagaattgacaacaa |
316 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
30380326 |
tctaacactggagattgacaacaa |
30380349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 316
Target Start/End: Original strand, 14233709 - 14233812
Alignment:
| Q |
213 |
attgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgaca |
312 |
Q |
| |
|
|||||| | ||||||||||| ||||||||| ||||||| ||||||| ||||| |||||||| |||||||| ||||||||||||| || |||||||||| |
|
|
| T |
14233709 |
attgcaagaacatttgctacttgtcaagctatgtggttagattcagtgatgaaggagcttaaatgtgaagtagtgaagcctctaaccctcagaattgaca |
14233808 |
T |
|
| Q |
313 |
acaa |
316 |
Q |
| |
|
|||| |
|
|
| T |
14233809 |
acaa |
14233812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 29011291 - 29011197
Alignment:
| Q |
189 |
ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagt |
283 |
Q |
| |
|
|||||||| ||| || ||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||| |
|
|
| T |
29011291 |
ctctcatcttgtgaagctgagtatattgcaggaatatttgctacatgtcaagctttgtggttggattcagtgatgaatgaactcaagtgtgaagt |
29011197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 28248748 - 28248857
Alignment:
| Q |
207 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
306 |
Q |
| |
|
|||||||| || || || |||||||| || ||| | || ||| |||||| || ||||||||||| |||||||||||| | |||||||| ||||||| | |
|
|
| T |
28248748 |
gagtacatagctggaacttttgctacttgccaaacattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactgaaga |
28248847 |
T |
|
| Q |
307 |
ttgacaacaa |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
28248848 |
ttgacaacaa |
28248857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 48910 - 49019
Alignment:
| Q |
207 |
gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa |
306 |
Q |
| |
|
|||||||| || || || |||||||| || ||| | || ||| |||||| || ||||||||||| |||||||||||| | |||||||| ||||||| | |
|
|
| T |
48910 |
gagtacatagctggaacttttgctacttgccaaacattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactgaaga |
49009 |
T |
|
| Q |
307 |
ttgacaacaa |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
49010 |
ttgacaacaa |
49019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 44536499 - 44536443
Alignment:
| Q |
185 |
tgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagc |
241 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||| ||||||||||| |||||||| |
|
|
| T |
44536499 |
tgcgctctcatccagtaaaccagagtacattgcagaaacatttgctacttgtcaagc |
44536443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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