View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18514_high_8 (Length: 326)
Name: NF18514_high_8
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18514_high_8 |
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| [»] scaffold0879 (2 HSPs) |
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Alignment Details
Target: scaffold0879 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 3590 - 3396
Alignment:
| Q |
1 |
ttgatcgtaatttggatttaatttattgttcaagaaaaccatatttctttttaaaaaa--caaattatctttcatgctataactttgcgtcactattgtc |
98 |
Q |
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| T |
3590 |
ttgatcgaaatttggatttaatttattggtcaagaaaaccatatttctttataaaaaagcaaaagtatcttttatgctatagctttgtgtcactattttc |
3491 |
T |
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| Q |
99 |
aatgaatt----aataaactacaacctaattacttgtcttgtcgatatgg----ttatttaatgagaaatggttatatgtattgtaaggaatattt |
186 |
Q |
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| T |
3490 |
aatgaattaataaataaactacaatctaattacttgtcttgtcgatatagtactttatttaatgagaaatggttatatgtattgt-aggaatattt |
3396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 203 - 302
Target Start/End: Complemental strand, 3413 - 3315
Alignment:
| Q |
203 |
tgtattgtaaggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacgtaccttaaaatttaata |
302 |
Q |
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| T |
3413 |
tgtattgta-ggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacctactataaaatttaata |
3315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 24469327 - 24469133
Alignment:
| Q |
1 |
ttgatcgtaatttggatttaatttattgttcaagaaaaccatatttctttttaaaaaa--caaattatctttcatgctataactttgcgtcactattgtc |
98 |
Q |
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| T |
24469327 |
ttgatcgaaatttggatttaatttattggtcaagaaaaccatatttctttataaaaaagcaaaagtatcttttatgctatagctttgtgtcactattttc |
24469228 |
T |
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| Q |
99 |
aatgaatt----aataaactacaacctaattacttgtcttgtcgatatgg----ttatttaatgagaaatggttatatgtattgtaaggaatattt |
186 |
Q |
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| T |
24469227 |
aatgaattaataaataaactacaatctaattacttgtcttgtcgatatagtactttatttaatgagaaatggttatatgtattgt-aggaatattt |
24469133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 203 - 302
Target Start/End: Complemental strand, 24469150 - 24469052
Alignment:
| Q |
203 |
tgtattgtaaggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacgtaccttaaaatttaata |
302 |
Q |
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| T |
24469150 |
tgtattgta-ggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacctactataaaatttaata |
24469052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 24422477 - 24422571
Alignment:
| Q |
94 |
ttgtcaatgaattaataaactacaacctaattacttgtcttgtcgatatgg---ttatttaatgagaaatggttatatgtattgtaaggaatattt |
186 |
Q |
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| T |
24422477 |
ttgtcaatgaattaataaactacaatctaattacttgtcttgtcgatatggtacttatttaatgagaaatggttatatgtattgt-aggaatattt |
24422571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 291
Target Start/End: Original strand, 24478620 - 24478707
Alignment:
| Q |
203 |
tgtattgtaaggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacgtacctt |
291 |
Q |
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| T |
24478620 |
tgtattgta-ggaatatttcgttttggtttaaaaaatttaattgacttgttgtatatataattactgtctatctcagtcgacctacctt |
24478707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 203 - 291
Target Start/End: Original strand, 24422554 - 24422641
Alignment:
| Q |
203 |
tgtattgtaaggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacgtacctt |
291 |
Q |
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| T |
24422554 |
tgtattgta-ggaatatttcgttttgatttaaacaatgtaattgacttggtgtatatataattactgtctatctcagtcgacctacctt |
24422641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24422407 - 24422477
Alignment:
| Q |
1 |
ttgatcgtaatttggatttaatttattgttcaagaaaaccatatttctttttaaaaaac-aaattatcttt |
70 |
Q |
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| T |
24422407 |
ttgatcgttatttggatttaatttattggtccagaaaaccatatttcttataaaaaatcaaaattatcttt |
24422477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 24478344 - 24478401
Alignment:
| Q |
60 |
aaattatctttcatgctataacttt-gcgtcactattgtcaatgaattaataaactac |
116 |
Q |
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| T |
24478344 |
aaattatgttttatgctataacttttgtgccactattgtcaatgaattaataagctac |
24478401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 24478597 - 24478637
Alignment:
| Q |
145 |
ttatttaatgagaaatggttatatgtattgtaaggaatattt |
186 |
Q |
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| T |
24478597 |
ttatttaatgtgaaatggttatatgtattgt-aggaatattt |
24478637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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