View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18514_low_1 (Length: 1265)
Name: NF18514_low_1
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18514_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 1132; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1132; E-Value: 0
Query Start/End: Original strand, 1 - 1253
Target Start/End: Complemental strand, 14869973 - 14868721
Alignment:
| Q |
1 |
tctagtatcagcagttgtggtgcacaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactccgtnnnnnnntcaccatcttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14869973 |
tctagtatcagcagttgtggtgcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactccgtaaaaaaatcaccatcttcaa |
14869874 |
T |
|
| Q |
101 |
catcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869873 |
catcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgct |
14869774 |
T |
|
| Q |
201 |
cccaaaactgacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttctttaccatgccctctacccgct |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869773 |
cccaaaactaacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttctttaccatgccctctacccgct |
14869674 |
T |
|
| Q |
301 |
ttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcatatgtactctcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869673 |
ttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcatatgtactctcaa |
14869574 |
T |
|
| Q |
401 |
tctcatgactatcaaacagtgatccatagctttttctctctgaatctttaatcattttcatcaaataagtgtaatcattcggtgctctaagccaatccgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869573 |
tctcatgactatcaaacagtgatccatagctttttctctctgaatctttaatcattttcatcaaataagtgtaatcattcggtgctctaagccaatccgg |
14869474 |
T |
|
| Q |
501 |
aagttgtaaacgtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaagtgttcaata |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869473 |
aagttgtaaacgtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaagtgttcaata |
14869374 |
T |
|
| Q |
601 |
gagttcattgcagaatgagcaaagtaacttccactaatgcaaattaaccttggaattcccaattcatcagcaatatcaacactccaaggatagaacatgt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14869373 |
gagttcattgcagaatgagcaaagtaacttccactaatacaaattaaccttggaattcccaattcatcagcaacatcaacactccaaggatagaacatgt |
14869274 |
T |
|
| Q |
701 |
cagtgactatgaaatcaggtttcatgtcacggaattgttgtttgaattgctcttggagaatgatgagtccctgatagattttcgaacgtatctcattagg |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869273 |
cagtgactatgaaatcaggtttcatgtcacggaattgttgtttgaattgctcttggagaatgatgagtccctgatagattttcgaacgtatctcattagg |
14869174 |
T |
|
| Q |
801 |
agtgtcggcgttgaagctttccattccttgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaatcgcgg |
900 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869173 |
agtgtcggcgttgaagctttccattcctcgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggctagaatcgcgg |
14869074 |
T |
|
| Q |
901 |
tcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctactacgaaaa |
1000 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14869073 |
tcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtctactacaaaaa |
14868974 |
T |
|
| Q |
1001 |
tgaggtgactttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatctggtttttgtt |
1100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14868973 |
tgaggtgactttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatctggtttttgtt |
14868874 |
T |
|
| Q |
1101 |
ttaaggcaaaggttgataagaggaagagaaaatgtgnnnnnnncttacccnnnnnnnnnnnnnnnnnttctagtcagtgcataatcaaagacaaaagaga |
1200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14868873 |
ttaaggcaaaggttgataagaggaagagaaaatgtgtttttttcttaccctgatgatgatgatgatgttctagtcagtgcataatcaaagacaaaagaga |
14868774 |
T |
|
| Q |
1201 |
gcatgcatgaatgaatgaattttggttacagaacatgaatgaattggtatatt |
1253 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14868773 |
gcatgcatgaacgaatgaattttggttacagaacatgaatgaattggtatatt |
14868721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 1 - 1104
Target Start/End: Original strand, 16908686 - 16909800
Alignment:
| Q |
1 |
tctagtatcagcagttgtggtgcacaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactccgtnnnnnnn------tcaccat |
94 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| | ||||| | |
|
|
| T |
16908686 |
tctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttgtttctttctttcattctcttctcaaactcactcaaaaaaccatcatcaccgt |
16908785 |
T |
|
| Q |
95 |
cttcaacatcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgtt |
194 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16908786 |
cttcggcatcttcgattttcctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgtt |
16908885 |
T |
|
| Q |
195 |
catgctcccaaaactgacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttctttaccatgccctcta |
294 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
16908886 |
catgctcccaaaactaacataaagaacagaatcatatttctttgaatcaagccacttaagcaccccttcttcttcatcttcttctttaccatgtcctcta |
16908985 |
T |
|
| Q |
295 |
cccgctttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcatatgtac |
394 |
Q |
| |
|
|| |||||||| |||||||||| ||||| ||| | |||||||||||||| ||||||||||| ||||||| ||| ||||||||| |||||||| |||| |
|
|
| T |
16908986 |
ccagctttatctgaatcatctttgttcatccacaaagaaactggtcccacactccaactcttacttcccatggctatcttgtaatagtcctcataagtac |
16909085 |
T |
|
| Q |
395 |
tctcaatctcatga---ctatcaaacagtgatccatagctttttctctctgaatctttaatcattttcatcaaataagtgtaatcattcggtgctctaag |
491 |
Q |
| |
|
|||||||||| | |||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
16909086 |
cttcaatctcataatagctatcaaacaatgatccatagctttttttctctgaatctttgatcatcttcatcaaataagtataaccatttggtgctctaag |
16909185 |
T |
|
| Q |
492 |
ccaatccggaagttgtaaacgtttcatttccaccttgtgaggcaacccaggaagaagaaaactctcgctattcaatttaactttcgcctgaggtgagaag |
591 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||| || |||||| || |
|
|
| T |
16909186 |
ccaatccggaagttgcaaacgcgtcatttccacgttgtgaggcaacccaggaagcagaaaacttacgctattcgatttaactttggcatgaggttcaaat |
16909285 |
T |
|
| Q |
592 |
tgttcaatagagttcattgcagaatgagcaaagtaacttccactaatgcaaattaaccttggaattcccaattcatcagcaatatcaacactccaaggat |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16909286 |
tgttcaatagagttcattgcagaatgagcaaagtaacttccaccaatacaaatcaaccttggaattcccaattcatcagcaacatcaacactccaaggat |
16909385 |
T |
|
| Q |
692 |
agaacatgtcagtgactatgaaatcaggtttcatgtcacggaattgttgtttgaattgctcttggagaatgatgagtccctgatagattttcgaacgtat |
791 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
16909386 |
aaaacatgtcagtgactatgaaatcaggtttcatgtcacgaaatagttgtgtgaattgctcttggagaatggcaagtccctgatagattttggaaattat |
16909485 |
T |
|
| Q |
792 |
ctcattaggagtgtcggcgttgaagctttccattccttgtgccaaaccaggtacttgtggaaacatgacaacatgagttctaatgggacgaccgcggcta |
891 |
Q |
| |
|
|| ||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |||||||| || |
|
|
| T |
16909486 |
gtctttaggagtgtcagcattgaaactttccattccttgtggcaaaccaggtacttgtggaaacttgacaatgtgagttctaatggaccgaccgcgactt |
16909585 |
T |
|
| Q |
892 |
gaatcgcggtcgattgaggtttgaaaaatggctgcatttgatggtgtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtcta |
991 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16909586 |
gaatcgtggtcgatggaggtttgaaaaatggctgcatttgctggtgtggtgattatggtaacatccacattatgcatagcaaaaagccttgctatgtcta |
16909685 |
T |
|
| Q |
992 |
ctacgaaaatgaggtgac--tttttgatataaaaggaagaaaaacagcttttagcattgtttcttcttcaactttgactccaagggattccatcagaatc |
1089 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||| |||| |
|
|
| T |
16909686 |
ctacgaaaatgaggtgactttttttgatataaagggaagaaaaacagcttttaacattgtttcttcttcaactttcacaccaaaggattccattagaaat |
16909785 |
T |
|
| Q |
1090 |
tggtttttgttttaa |
1104 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
16909786 |
tagattttgttttaa |
16909800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 6e-25; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 117 - 256
Target Start/End: Original strand, 14710257 - 14710396
Alignment:
| Q |
117 |
aacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactgacatag |
216 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||| || ||||||||||| | ||| |||||||| | |||| |
|
|
| T |
14710257 |
aacaacccaaatgaaatcatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttagatag |
14710356 |
T |
|
| Q |
217 |
agaacagaatcatctttcttagaatcaagccacttaagca |
256 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| ||||||| |
|
|
| T |
14710357 |
agaacagaattctctttcttagagttaagccatttaagca |
14710396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 26260450 - 26260382
Alignment:
| Q |
110 |
ttttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgag |
178 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
26260450 |
ttttcctaacaacccaaatgaaattatgacctgaattttcaagtccatgagctatttcaacaacctgag |
26260382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 14710144 - 14710218
Alignment:
| Q |
4 |
agtatcagcagttgtggtgcacaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactcc |
78 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||||||| || || |||||||| |||| |||||| ||||||||| |
|
|
| T |
14710144 |
agtatcaacatttgtggtgcccaaccccatatcaaataacccttattgctttctttcactctcttttcaaactcc |
14710218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 26227550 - 26227488
Alignment:
| Q |
110 |
ttttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaa |
172 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||| |||||| ||||||||||||| |||| |
|
|
| T |
26227550 |
ttttcctaacaacccaaatgaaattatgacctgaattttcaagaccatgagctatttctacaa |
26227488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 26204458 - 26204405
Alignment:
| Q |
115 |
ctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttca |
168 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||||| |||||||||||||| |
|
|
| T |
26204458 |
ctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca |
26204405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 26224096 - 26224043
Alignment:
| Q |
115 |
ctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttca |
168 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||||| |||||||||||||| |
|
|
| T |
26224096 |
ctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca |
26224043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 26207989 - 26207921
Alignment:
| Q |
110 |
ttttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgag |
178 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||| ||| || ||||||||||||| |||| ||||| |
|
|
| T |
26207989 |
ttttcctaacaacccaaatgaaattatgaccggaattttccagaccatgagctatttctacaatctgag |
26207921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 26278381 - 26278313
Alignment:
| Q |
6 |
tatcagcagttgtggtgcacaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaa |
74 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| | ||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
26278381 |
tatcagcagttgtggtgcccaatcccatatgatgtagcccttgttgctttctttcatccttttctcaaa |
26278313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 17572660 - 17572779
Alignment:
| Q |
117 |
aacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactgacatag |
216 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||| || ||||||||||| | ||| |||||||| |||||| |
|
|
| T |
17572660 |
aacaacccaaatgaaatcatggcttgaagtttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttacatag |
17572759 |
T |
|
| Q |
217 |
agaacagaatcatctttctt |
236 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
17572760 |
agaacagaattctctttctt |
17572779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 17620052 - 17619933
Alignment:
| Q |
117 |
aacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactgacatag |
216 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||||||||||||||| || |||| | ||||||||||| | ||| |||||||| |||||| |
|
|
| T |
17620052 |
aacaacccaaatgaaattatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatggtgggaacttgtttaagctgccaaaacttacatag |
17619953 |
T |
|
| Q |
217 |
agaacagaatcatctttctt |
236 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
17619952 |
ataacagaattctctttctt |
17619933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 5995038 - 5995166
Alignment:
| Q |
103 |
tcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcc |
202 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| ||| || |||| |||||||||||| || |||||||| | ||||| | ||| || || ||||| || | |
|
|
| T |
5995038 |
tcttcattttttctaacaacccaaatgaaattatgacctgaattttcaagtgcatgtgcaatttcaactaactgagaataaggaaatttattcatactgc |
5995137 |
T |
|
| Q |
203 |
caaaactgacatagagaacagaatcatct |
231 |
Q |
| |
|
||||||| ||||| | ||||||| ||||| |
|
|
| T |
5995138 |
caaaacttacatataaaacagaaccatct |
5995166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 17620171 - 17620097
Alignment:
| Q |
4 |
agtatcagcagttgtggtgcacaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactcc |
78 |
Q |
| |
|
||||||| || |||||| || ||||||||||||||||| || |||||| |||| |||||||| |||||||||||| |
|
|
| T |
17620171 |
agtatcaacatttgtggggcccaaccccatatcaaataacccttgttgttttctttcattcttttctcaaactcc |
17620097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 17572568 - 17572621
Alignment:
| Q |
25 |
caaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactcc |
78 |
Q |
| |
|
||||||||||||||||| || || |||||||| |||| |||||| ||||||||| |
|
|
| T |
17572568 |
caaccccatatcaaataacccttattgctttctttcactctcttttcaaactcc |
17572621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 12613540 - 12613434
Alignment:
| Q |
147 |
ttcaagtgcatgagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactgacatagagaacagaatcatctttcttagaatcaagc |
246 |
Q |
| |
|
||||||||||||||||||||||| || |||| | ||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||| |||| |
|
|
| T |
12613540 |
ttcaagtgcatgagctatttcaatgagttgagatgatgggaacttgttcatgctaccaaaacttacatagagaacagaattctctttcttggaattaagc |
12613441 |
T |
|
| Q |
247 |
cacttaa |
253 |
Q |
| |
|
|| |||| |
|
|
| T |
12613440 |
catttaa |
12613434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 12613683 - 12613609
Alignment:
| Q |
4 |
agtatcagcagttgtggtgcacaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactcc |
78 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||||||| || || |||||||| |||| ||| |||||||||||| |
|
|
| T |
12613683 |
agtatcaacaattgtggtgcccaaccccatatcaaataacccttattgctttctttcactcttttctcaaactcc |
12613609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 937 - 989
Target Start/End: Complemental strand, 12611293 - 12611241
Alignment:
| Q |
937 |
gtggtgattatggttacatccacaccatgcatagcaaaaagccttgctatgtc |
989 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
12611293 |
gtggtgattatggtgatatccacaccatgcatagcaaatagtcttgccatgtc |
12611241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 12613389 - 12613301
Alignment:
| Q |
301 |
ttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcata |
389 |
Q |
| |
|
||||| ||| |||||||||| |||||| ||||||||||| | |||||||| ||| ||||| | ||| ||||||||||||||||||| |
|
|
| T |
12613389 |
ttatcagaaacatcttggtttgcccataatgaaactggtcctaagctccaacactttgttccaaatgcattcttgtaatgctcctcata |
12613301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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