View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18514_low_10 (Length: 307)
Name: NF18514_low_10
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18514_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 4109228 - 4109498
Alignment:
| Q |
22 |
tgtccatgagttccaactcctcctcttccttatccatagacgttgatgaatcagcagaaacacgcatccaccgtctcatatcagaacatccagttatcat |
121 |
Q |
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| T |
4109228 |
tgtccatgagttccaactcctcctcttccttatccatagacgttgatgaatcagcagaaacacgcatccaccgtctcatatcagaacatccagttatcat |
4109327 |
T |
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| Q |
122 |
cttcacacgttcctcttgctgcatgtgtcatgtcatgaagaagcttctctccaccataggtgttaatcccaccgtcatcgaattagacgacaacgagatc |
221 |
Q |
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| T |
4109328 |
cttcacacgttcctcttgctgcatgtgtcatgtcatgaagaagcttctctccaccataggtgttaatcccaccgtcatcgaattagacgacaacgagatc |
4109427 |
T |
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| Q |
222 |
gcctctttgtcgtctgacgatgacgatgatcttgcttccgtcctccgtaaccgctctcctgctgtcttcat |
292 |
Q |
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| T |
4109428 |
gcctctttgtcgtctgacgatgacgatgatcttgcttccgtcctccgtaaccgctctcctgctgtcttcat |
4109498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 48154189 - 48154041
Alignment:
| Q |
76 |
cagaaacacgcatccaccgtctcatatcagaacatccagttatcatcttcacacgttcctctt---gctgcatgtgtcatgtcatgaagaagcttctctc |
172 |
Q |
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||||||| || ||| |||| |||||||||||||| || || ||||||||||| || ||||| | |||||||||| |||||||||| ||| || |||| |
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| T |
48154189 |
cagaaactcgaatcaaccgcctcatatcagaacaccctgtcatcatcttcacccgatcctcctcatgctgcatgtgccatgtcatgaggaatctcctctt |
48154090 |
T |
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| Q |
173 |
caccataggtgttaatcccaccgtcatcgaattagacgacaacgagatc |
221 |
Q |
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| T |
48154089 |
caccatcggcgttcatcccaccgttatccaattggatgacaacgagatc |
48154041 |
T |
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