View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18514_low_12 (Length: 289)
Name: NF18514_low_12
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18514_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 28951325 - 28951595
Alignment:
| Q |
1 |
attaaaatacctgatcttgaaattcaatgttatggccacatgaggggcaagttagagttcgaacttcggttggttttgtttcatcatctgtaacaagagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28951325 |
attaaaatacctgatcttgaaattcaatgttatggccacatgaggggcaagttagagttcgaacttcggttggttttgtttcatcatctgtaacaagagg |
28951424 |
T |
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| Q |
101 |
actttcattgctagttccaggaataacagtagatgttattagttcaatgcccctatcttgatcatctgagtcattgcaccatgtcatgatccctttaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28951425 |
actttcattgctagttccaggaataacagtagatgttattagttcaatgcccctatcttgatcatctgagtcattgcaccatgtcatgatccctttaatt |
28951524 |
T |
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| Q |
201 |
gggattttccaattctatcaacataaaaacaaagctctttatttcttccacaccaccctacaacaaatatc |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28951525 |
gggattttccaattctatcaacataaaaacaaagctctttatttcttccacaccaccctacaacaaatatc |
28951595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 34832632 - 34832902
Alignment:
| Q |
1 |
attaaaatacctgatcttgaaattcaatgttatggccacatgaggggcaagttagagttcgaacttcggttggttttgtttcatcatctgtaacaagagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34832632 |
attaaaatacctgatcttgaaattcaatgttatggccacatgaggggcaagttagggttcgaacttcggttggttttgtttcatcatctgtaacaagagt |
34832731 |
T |
|
| Q |
101 |
actttcattgctagttccaggaataacagtagatgttattagttcaatgcccctatcttgatcatctgagtcattgcaccatgtcatgatccctttaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34832732 |
actttcattgctagttccaggaataacagtagatgttattagttcaatgcccctatcttgatcatctgagtcattgcaccatgtcatgatctctttaatt |
34832831 |
T |
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| Q |
201 |
gggattttccaattctatcaacataaaaacaaagctctttatttcttccacaccaccctacaacaaatatc |
271 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34832832 |
gggattttccaattctatcaacataaaaacaaagctctttatttcttccacaccaccctataacaaatatc |
34832902 |
T |
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