View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18514_low_13 (Length: 267)

Name: NF18514_low_13
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18514_low_13
NF18514_low_13
[»] chr7 (21 HSPs)
chr7 (1-252)||(29577923-29578174)
chr7 (1-252)||(29582092-29582343)
chr7 (1-147)||(6789178-6789324)
chr7 (5-240)||(8609587-8609822)
chr7 (5-122)||(8102337-8102454)
chr7 (5-122)||(17259911-17260028)
chr7 (1-252)||(8545299-8545550)
chr7 (2-231)||(8383148-8383377)
chr7 (1-122)||(27831256-27831377)
chr7 (183-251)||(8537884-8537952)
chr7 (1-252)||(8569977-8570228)
chr7 (1-122)||(7878114-7878235)
chr7 (5-122)||(8017794-8017911)
chr7 (1-122)||(8590304-8590425)
chr7 (5-252)||(8581370-8581617)
chr7 (1-128)||(10494749-10494876)
chr7 (1-102)||(8667085-8667186)
chr7 (5-122)||(17267609-17267726)
chr7 (174-253)||(8559167-8559246)
chr7 (1-30)||(1301127-1301156)
chr7 (5-122)||(8575996-8576113)
[»] chr8 (1 HSPs)
chr8 (5-253)||(12528174-12528422)
[»] chr1 (3 HSPs)
chr1 (1-122)||(4678938-4679059)
chr1 (1-128)||(15594700-15594827)
chr1 (9-121)||(34467170-34467282)
[»] chr4 (2 HSPs)
chr4 (2-122)||(35132123-35132243)
chr4 (1-80)||(9336314-9336393)
[»] chr2 (7 HSPs)
chr2 (1-122)||(16657898-16658019)
chr2 (9-179)||(12234364-12234533)
chr2 (1-78)||(12245831-12245908)
chr2 (1-132)||(16662363-16662494)
chr2 (1-39)||(43625078-43625116)
chr2 (1-78)||(11999074-11999151)
chr2 (1-69)||(7541892-7541960)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 29578174 - 29577923
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  29578174 agctgcaccataagcaacagcctcgtcagggtttatgctcatgcacaaatccctacccttgaaaaagtcttgcaatagtttccgcactttgggaattcta 29578075  T
Q  101 gatgaacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29578074 gatgaacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcacgtagacaactccgaacaatctccatacatttttcaaagaggt 29577975  T
Q  201 ccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaat 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29577974 ccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaat 29577923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 29582343 - 29582092
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    |||||||||||||||||||||||| || ||||| |||||||||||||||||| | ||||||||||| ||||||||||| |   ||| |||||||||||||    
T  29582343 agctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatccttccccttgaaaaattcttgcaatagctgatgcactttgggaattcta 29582244  T
Q  101 gatgaacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggt 200  Q
    || || || |||| |||||| || |||| |||  |||||| | |||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  29582243 gaagagccaccaataaggacgatatcatctacactactcttgaccatgttagcatcacgtagacaactcccaacaatctccatacatttttcaaagaggt 29582144  T
Q  201 ccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaat 252  Q
    | ||||||| | ||||||| || |||||||||| || ||||||||| |||||    
T  29582143 cgatgttgatttgctcaaacttggcccgagtaactggtgagcagaaatcaat 29582092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 6789178 - 6789324
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    ||||||||| |||||||||||||| || ||||| |||||||||||||||||| | ||| ||||||  |||||||||||||   ||| |||||||||||||    
T  6789178 agctgcaccgtaagcaacagcctcatcagggttgatgctcatgcacaaatcctttcccatgaaaacttcttgcaatagttgttgcactttgggaattcta 6789277  T
Q  101 gatgaacctccaacaaggacaatttcatgtaccatactctggtccat 147  Q
    || || || |||||||||||||  |||| ||| ||||||| ||||||    
T  6789278 gaagacccaccaacaaggacaacatcatttacaatactcttgtccat 6789324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 8609587 - 8609822
Alignment:
Q  5 gcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatg 104  Q
    |||||||||||||| ||||| || ||||| |||||||| ||||||||| | || |||||||||||||||| ||| | |  || ||| ||||| ||||| |    
T  8609587 gcaccataagcaaccgcctcatcagggttgatgctcatacacaaatcctttccattgaaaaagtcttgcagtagctgcttcactttcggaatcctagaag 8609686  T
Q  105 aacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggtccat 204  Q
    ||||||||||||| ||||  |||| |||  |  |||  ||||| | |||||||   ||||| ||   |||  ||||| |||| |||||||||||||||||    
T  8609687 aacctccaacaagaacaacatcatctacggttttcttatccatttcagcatcagtaagacatctttcaaccgtctccatacacttttcaaagaggtccat 8609786  T
Q  205 gttgagtcgctcaaatttcgcccgagtaattgatga 240  Q
    ||| ||| ||||||| ||||| ||||| ||||||||    
T  8609787 gttaagttgctcaaacttcgcacgagtgattgatga 8609822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 8102337 - 8102454
Alignment:
Q  5 gcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatg 104  Q
    ||||||||||||||||||||||||||||| |||||  |||| |  ||| |||| ||||| ||||||||||| |||| | | | ||||||||| |||| ||    
T  8102337 gcaccataagcaacagcctcgtcggggttgatgcttttgcatagctccttaccattgaagaagtcttgcaacagttgctgaactttgggaatcctagttg 8102436  T
Q  105 aacctccaacaaggacaa 122  Q
    |||| |||||||| ||||    
T  8102437 aaccaccaacaagaacaa 8102454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 17259911 - 17260028
Alignment:
Q  5 gcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatg 104  Q
    |||||||||||||||||||| || ||||| |||||| |||| || ||| |||||||||| || || |||||||||| | ||| ||| ||||| ||||| |    
T  17259911 gcaccataagcaacagcctcatcagggttgatgctcttgcataattccttacccttgaagaaatcctgcaatagttgctgcactttcggaatcctagaag 17260010  T
Q  105 aacctccaacaaggacaa 122  Q
    | || |||||||||||||    
T  17260011 atccaccaacaaggacaa 17260028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 8545299 - 8545550
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    |||||||||||||||||||||||| || ||||| |||||| |||| || ||| | ||||| ||||| || || ||||| |  | || ||| ||||| |||    
T  8545299 agctgcaccataagcaacagcctcatcagggttaatgctcttgcataattccttccccttaaaaaactcctgtaatagctgtctcactttaggaatccta 8545398  T
Q  101 gatgaacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggt 200  Q
    || ||||| |||||||||||||  |||| |||  ||| || |||||| | |||||||   |||||||    |||| | ||| |||| |||||||||||||    
T  8545399 gaagaaccgccaacaaggacaacatcatctacactacccttgtccatcttagcatcaacaagacaacaattaacagtgtccatacacttttcaaagaggt 8545498  T
Q  201 ccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaat 252  Q
    |||| || | | ||||||| || |||||||| ||  |||| || ||||||||    
T  8545499 ccatattcaattgctcaaacttggcccgagtgatgcatgaacaaaagtcaat 8545550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 8383377 - 8383148
Alignment:
Q  2 gctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctag 101  Q
    |||||||||||||||||||||||||| || ||||||||||  || |  ||| | |  |||||||||| ||||||||| |   ||| ||||||||| || |    
T  8383377 gctgcaccataagcaacagcctcgtcaggatttatgctcacacaaaggtccttccaattgaaaaagtgttgcaatagctcttgcactttgggaatcctcg 8383278  T
Q  102 atgaacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggtc 201  Q
    | ||||| || |  || ||||  |||| |||  |||||| || ||| | |||||||   ||||| |||  |||| ||||| |||| |||||||| |||||    
T  8383277 aagaaccaccgatgagaacaacatcatctacactactcttgttcatcttagcatcagtaagacagctctcaacagtctccatacacttttcaaataggtc 8383178  T
Q  202 catgttgagtcgctcaaatttcgcccgagt 231  Q
    ||| |||||| |||||||||| ||||||||    
T  8383177 catattgagttgctcaaatttggcccgagt 8383148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 27831377 - 27831256
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    |||||||||| ||||||||||||| || || || |||||| ||||||||||| | ||||||||||||||   |||||| | | ||| ||||||||| ||     
T  27831377 agctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaatcctttcccttgaaaaagtccgccaatagctgctgcactttgggaatcctt 27831278  T
Q  101 gatgaacctccaacaaggacaa 122  Q
    || || || |||||||||||||    
T  27831277 gaagagccaccaacaaggacaa 27831256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 8537884 - 8537952
Alignment:
Q  183 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaa 251  Q
    |||| |||||||||||||||||||||||| ||||||| || |||||||| |||||||| ||||| ||||    
T  8537884 tacacttttcaaagaggtccatgttgagttgctcaaacttggcccgagtgattgatgaacagaaatcaa 8537952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 8569977 - 8570228
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    ||||||||| |||||||||||||| || ||||| |||||  |||| || ||| | |||| |||||| ||||| ||||| | || || ||| ||||| |||    
T  8569977 agctgcaccgtaagcaacagcctcatcagggttaatgctgttgcataattccttcccctggaaaaactcttgtaatagctgcctcactttaggaatccta 8570076  T
Q  101 gatgaacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggt 200  Q
    || ||||| |||||||||||||  |||| |||  || |||  ||||| | |||||||   ||||||||   |||| | ||| |||| |||||||||||||    
T  8570077 gaagaaccaccaacaaggacaacatcatctacactattcttttccatcttagcatcagcaagacaactattaacagtttccatacacttttcaaagaggt 8570176  T
Q  201 ccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaat 252  Q
     ||| || | |  |||||| || ||||| || |||||||| | |||||||||    
T  8570177 tcatattcatttcctcaaacttggcccgggttattgatgaactgaagtcaat 8570228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7878235 - 7878114
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    ||||||||||||||||||||| || || ||||| |||||  |||| | |||| | ||||| |||||||| |||||||| | | ||| |||| |||| |||    
T  7878235 agctgcaccataagcaacagcttcatccgggttgatgctactgcaaatatccttccccttaaaaaagtcctgcaatagctgctgcactttgagaatccta 7878136  T
Q  101 gatgaacctccaacaaggacaa 122  Q
    ||||| || |||||||| ||||    
T  7878135 gatgatccaccaacaagtacaa 7878114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 8017911 - 8017794
Alignment:
Q  5 gcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatg 104  Q
    ||||||||||||||||||||||| ||||| || ||| |||| |  ||  |||| ||||| || |||||||| |||| | | | |||||||||||||| ||    
T  8017911 gcaccataagcaacagcctcgtctgggttgatactcttgcaaagctctttaccattgaagaaatcttgcaacagttgctgaactttgggaattctagttg 8017812  T
Q  105 aacctccaacaaggacaa 122  Q
    |||| |||||||| ||||    
T  8017811 aaccgccaacaagaacaa 8017794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 8590304 - 8590425
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    |||||||||||||||||||||||| || || || |||||  || | | |||| | ||| | ||||||||||||||||| | | ||| ||||||||| |||    
T  8590304 agctgcaccataagcaacagcctcatctggattgatgctattgtaaagatccttccccataaaaaagtcttgcaatagctgctgcactttgggaatccta 8590403  T
Q  101 gatgaacctccaacaaggacaa 122  Q
    || ||||| |||||||| ||||    
T  8590404 gaagaaccaccaacaagtacaa 8590425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 8581370 - 8581617
Alignment:
Q  5 gcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatg 104  Q
    |||||||||||||||||||| || ||||| |||||| |||| || ||| | |||| |||||| || || ||||| |  | || ||| ||||| ||||| |    
T  8581370 gcaccataagcaacagcctcatcagggttgatgctcttgcataattccttcccctggaaaaactcctgtaatagctgtctcactttaggaatcctagaag 8581469  T
Q  105 aacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggtccat 204  Q
    |||| |||||||||||||  |||| |||  ||| |  |||||| | ||||||    ||||||||   |||| | ||| |||| ||||||||||||| |||    
T  8581470 aaccaccaacaaggacaacatcatctacactacccctgtccatcttagcatcggcaagacaactattaacagtgtccatacacttttcaaagaggttcat 8581569  T
Q  205 gttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaat 252  Q
     || | | ||||||| || |||||||| ||||| ||  ||||||||||    
T  8581570 attcatttgctcaaacttggcccgagttattgacgaatagaagtcaat 8581617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 10494876 - 10494749
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    |||||||||||||||||||||||| || ||||| || | |||| | || ||| | ||||||||||| ||| ||||||| | | ||| ||||||||| |||    
T  10494876 agctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatccta 10494777  T
Q  101 gatgaacctccaacaaggacaatttcat 128  Q
    || || || || ||||| ||||| ||||    
T  10494776 gacgagccacccacaagaacaatatcat 10494749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 8667085 - 8667186
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    ||||||||||||||||||||||||||| ||||| || | |||| | || ||| | ||||||||| | ||| ||||| ||| | ||| ||||||||| |||    
T  8667085 agctgcaccataagcaacagcctcgtctgggttgatacccatgaataattccttccccttgaaatattctagcaattgttcctgcactttgggaatccta 8667184  T
Q  101 ga 102  Q
    ||    
T  8667185 ga 8667186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 17267609 - 17267726
Alignment:
Q  5 gcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatg 104  Q
    |||||||||||||||||||| || ||||| || ||  |||| || ||| | |||||||| ||||  |||||||||| | ||| ||| ||||| ||||| |    
T  17267609 gcaccataagcaacagcctcatcagggttgatacttttgcataattccttccccttgaagaagttctgcaatagttgctgcactttcggaatcctagaag 17267708  T
Q  105 aacctccaacaaggacaa 122  Q
    | || |||||||||||||    
T  17267709 acccaccaacaaggacaa 17267726  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 8559167 - 8559246
Alignment:
Q  174 caatctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaatg 253  Q
    |||||||| |||| ||||||||||| ||||| || ||| ||||||| || ||||| || |||||||| || |||||||||    
T  8559167 caatctccatacacttttcaaagagatccatattcagttgctcaaacttagcccgtgtgattgatgaacacaagtcaatg 8559246  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1301127 - 1301156
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggg 30  Q
    ||||||||||||||||||||||||||||||    
T  1301127 agctgcaccataagcaacagcctcgtcggg 1301156  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 8575996 - 8576113
Alignment:
Q  5 gcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatg 104  Q
    |||||||||||||||||||| || ||||| |||||| | || || ||| | ||||||||||  || || ||||| |  | || ||| ||||| ||||| |    
T  8575996 gcaccataagcaacagcctcatcagggttgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttaggaatcctagaag 8576095  T
Q  105 aacctccaacaaggacaa 122  Q
    |||| |||||||||||||    
T  8576096 aaccaccaacaaggacaa 8576113  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 253
Target Start/End: Original strand, 12528174 - 12528422
Alignment:
Q  5 gcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatg 104  Q
    |||||||||||||||||||| || ||||| |||||| || | || ||| | ||||||||||| || |||||||| | |  || ||||||||| ||||| |    
T  12528174 gcaccataagcaacagcctcatcagggttgatgctcttgtataactccttgcccttgaaaaactcctgcaatagctgcttcactttgggaatcctagacg 12528273  T
Q  105 aacctccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggtccat 204  Q
    | || |||||||| ||||| |||| |||  |||||| |||||| | ||||||    | ||||||   |||  ||||| |||| |||||||||||||||||    
T  12528274 agccaccaacaagtacaatatcatctacactactcttgtccatcttagcatcggtcaaacaactttcaacggtctccatacacttttcaaagaggtccat 12528373  T
Q  205 gttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaatg 253  Q
     || ||| |||| || || || ||||| |||||||||||||||||||||    
T  12528374 attcagttgctcgaacttggctcgagtgattgatgagcagaagtcaatg 12528422  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4679059 - 4678938
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    |||||||||||||||||||||||| || ||||| || ||| ||||||||||| | | ||| ||||||||||||||||| | | ||| ||||||||| ||     
T  4679059 agctgcaccataagcaacagcctcatctgggttgatactcttgcacaaatccttccgcttaaaaaagtcttgcaatagatcctgcactttgggaatcctc 4678960  T
Q  101 gatgaacctccaacaaggacaa 122  Q
    |||||||| || ||||| ||||    
T  4678959 gatgaaccacccacaagaacaa 4678938  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 15594700 - 15594827
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    |||||||||||||||||||||||| || ||||| |||||||||||||| ||| | |||| |||||| || | ||||||||   ||| ||||||||| |||    
T  15594700 agctgcaccataagcaacagcctcatcagggttgatgctcatgcacaattcctttccctcgaaaaaatccttcaatagttgttgcactttgggaatccta 15594799  T
Q  101 gatgaacctccaacaaggacaatttcat 128  Q
    || || || ||||||| |||||| ||||    
T  15594800 gaagacccaccaacaatgacaatatcat 15594827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 34467282 - 34467170
Alignment:
Q  9 cataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacc 108  Q
    ||||||| |||||||| || ||||| |||||  |||| | |||| |||| |||||||||||  ||||||| | | ||| ||||||||| ||||| || ||    
T  34467282 cataagcgacagcctcatcagggttgatgctattgcatagatccttaccattgaaaaagtcccgcaatagctgctgcactttgggaatcctagaagagcc 34467183  T
Q  109 tccaacaaggaca 121  Q
     || |||||||||    
T  34467182 cccgacaaggaca 34467170  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 35132123 - 35132243
Alignment:
Q  2 gctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctag 101  Q
    ||||| |||||||| |||||||| |||||||| |||||| ||||||| ||| | || |||||||||| ||||||||| | | ||| ||||||||| ||||    
T  35132123 gctgccccataagctacagcctcatcggggttaatgctcttgcacaactccttccctttgaaaaagttttgcaatagctgctgcactttgggaatcctag 35132222  T
Q  102 atgaacctccaacaaggacaa 122  Q
    | || ||||||||||| ||||    
T  35132223 aagaccctccaacaagaacaa 35132243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9336393 - 9336314
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtt 80  Q
    |||||||||||||||||||||||| || ||||| || | |||| | || ||| | ||||||||||| ||| |||||||||    
T  9336393 agctgcaccataagcaacagcctcatctgggttgatacccatgaataattccttccccttgaaaaattctagcaatagtt 9336314  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 16658019 - 16657898
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    ||||||||| ||||||||||| || || ||||| || ||  |||| |||||| | ||||||||||||||||||||||| | | ||| ||||||||| |||    
T  16658019 agctgcaccgtaagcaacagcttcatccgggttgatacttttgcataaatccttgcccttgaaaaagtcttgcaatagatcctgcactttgggaatccta 16657920  T
Q  101 gatgaacctccaacaaggacaa 122  Q
    ||||| || || ||||| ||||    
T  16657919 gatgagccacccacaagaacaa 16657898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 12234364 - 12234533
Alignment:
Q  9 cataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacc 108  Q
    |||||||||| ||||| || ||||| || ||| ||||||  ||| | ||||||||||| || |||||||||| | ||| ||||||||| ||||| || ||    
T  12234364 cataagcaaccgcctc-tcagggttaatactcttgcacagctccttccccttgaaaaaatcctgcaatagttgctgcactttgggaatcctagaggaccc 12234462  T
Q  109 tccaacaaggacaatttcatgtaccatactctggtccatgtaagcatcacgtagacaactccgaacaatct 179  Q
     |||| |||||||| |||||  ||| |||| | |||||| | ||||||||  |||||||||  ||||||||    
T  12234463 gccaataaggacaacttcatccaccctacttttgtccatcttagcatcactaagacaactctcaacaatct 12234533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 12245908 - 12245831
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatag 78  Q
    |||||| |||||||||||||||||||| ||||| |||||| ||||||| ||| | || ||||||||||| || |||||    
T  12245908 agctgccccataagcaacagcctcgtcagggttaatgctcttgcacaattccttcccgttgaaaaagtcctgtaatag 12245831  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 16662494 - 16662363
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 100  Q
    |||||| ||||||||||||||||| || ||||| |||||| ||||||| ||| | || ||||| ||||   |||||| || | ||| ||| ||||| |||    
T  16662494 agctgccccataagcaacagcctcatcagggttgatgctcttgcacaactccttcccattgaagaagttacgcaataattcctgcacttttggaatccta 16662395  T
Q  101 gatgaacctccaacaaggacaatttcatgtac 132  Q
    || || || || ||||| ||||| ||||||||    
T  16662394 gacgagcccccgacaagaacaatatcatgtac 16662363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43625078 - 43625116
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgct 39  Q
    |||||||||||||||||||||||| || |||||||||||    
T  43625078 agctgcaccataagcaacagcctcatcagggtttatgct 43625116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11999074 - 11999151
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatag 78  Q
    |||||| |||||||| |||||||| || ||||| |||||| ||||||| ||| | || ||||||||||| || |||||    
T  11999074 agctgccccataagctacagcctcatcagggttaatgctcttgcacaactccttcccgttgaaaaagtcatgtaatag 11999151  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7541892 - 7541960
Alignment:
Q  1 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtc 69  Q
    |||||| ||||||||||||||||| || || || |||||| ||||||| ||| | || |||||||||||    
T  7541892 agctgccccataagcaacagcctcatcaggattaatgctcttgcacaagtcctttccattgaaaaagtc 7541960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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