View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18514_low_16 (Length: 249)

Name: NF18514_low_16
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18514_low_16
NF18514_low_16
[»] chr1 (18 HSPs)
chr1 (1-234)||(40662989-40663220)
chr1 (3-130)||(34915014-34915141)
chr1 (3-102)||(16556456-16556555)
chr1 (5-188)||(28267921-28268100)
chr1 (5-75)||(11049253-11049323)
chr1 (1-102)||(47899231-47899330)
chr1 (3-71)||(7524120-7524188)
chr1 (3-74)||(28287346-28287417)
chr1 (14-75)||(28083909-28083970)
chr1 (3-75)||(30557507-30557577)
chr1 (13-66)||(36660503-36660556)
chr1 (22-75)||(47892417-47892470)
chr1 (3-75)||(1514346-1514418)
chr1 (3-75)||(3515821-3515893)
chr1 (3-75)||(30850409-30850481)
chr1 (3-38)||(2555941-2555976)
chr1 (68-102)||(52059303-52059337)
chr1 (29-74)||(51500870-51500915)
[»] chr5 (10 HSPs)
chr5 (3-193)||(15368259-15368448)
chr5 (11-100)||(2937600-2937689)
chr5 (3-99)||(29821954-29822054)
chr5 (5-75)||(6951317-6951387)
chr5 (152-193)||(2864461-2864502)
chr5 (3-75)||(9818737-9818810)
chr5 (11-75)||(18851100-18851164)
chr5 (13-75)||(22226256-22226318)
chr5 (149-194)||(2937731-2937776)
chr5 (3-71)||(42858115-42858183)
[»] chr3 (10 HSPs)
chr3 (3-193)||(31708249-31708435)
chr3 (3-185)||(31012914-31013093)
chr3 (5-77)||(31492768-31492839)
chr3 (54-102)||(24649424-24649472)
chr3 (3-75)||(40147860-40147932)
chr3 (114-193)||(14021835-14021913)
chr3 (3-75)||(27266804-27266876)
chr3 (13-57)||(32523360-32523404)
chr3 (11-55)||(41596167-41596211)
chr3 (3-51)||(46853544-46853592)
[»] chr4 (16 HSPs)
chr4 (3-81)||(52965864-52965942)
chr4 (2-100)||(38716545-38716636)
chr4 (3-75)||(32818380-32818452)
chr4 (8-57)||(45011895-45011944)
chr4 (11-75)||(8604640-8604704)
chr4 (11-71)||(35065070-35065130)
chr4 (12-75)||(1048720-1048783)
chr4 (5-103)||(53655146-53655243)
chr4 (4-57)||(21691223-21691276)
chr4 (5-82)||(44278979-44279056)
chr4 (19-75)||(1616394-1616449)
chr4 (137-193)||(6463888-6463944)
chr4 (3-75)||(26617471-26617543)
chr4 (11-75)||(30357515-30357579)
chr4 (1-65)||(33843990-33844054)
chr4 (152-200)||(53655047-53655095)
[»] chr7 (6 HSPs)
chr7 (3-75)||(41386825-41386897)
chr7 (13-94)||(1442557-1442638)
chr7 (3-75)||(27571865-27571937)
chr7 (3-34)||(32295228-32295259)
chr7 (22-71)||(28725081-28725130)
chr7 (5-49)||(42816480-42816524)
[»] chr2 (8 HSPs)
chr2 (3-77)||(5533041-5533115)
chr2 (12-75)||(42982547-42982610)
chr2 (3-75)||(43501128-43501198)
chr2 (2-103)||(17281383-17281485)
chr2 (13-75)||(42740980-42741042)
chr2 (1-38)||(31415375-31415412)
chr2 (29-75)||(30503212-30503258)
chr2 (3-65)||(33019166-33019228)
[»] chr8 (9 HSPs)
chr8 (3-75)||(4662913-4662985)
chr8 (3-75)||(13384664-13384736)
chr8 (3-75)||(32927895-32927967)
chr8 (1-75)||(35494993-35495067)
chr8 (3-75)||(38868501-38868573)
chr8 (3-74)||(26100156-26100227)
chr8 (3-75)||(15677825-15677898)
chr8 (3-75)||(37684408-37684480)
chr8 (11-75)||(32994260-32994324)
[»] chr6 (10 HSPs)
chr6 (16-103)||(10669486-10669573)
chr6 (11-75)||(4910911-4910975)
chr6 (5-76)||(6654102-6654173)
chr6 (3-58)||(46298-46355)
chr6 (3-75)||(1485156-1485228)
chr6 (11-75)||(7952727-7952791)
chr6 (3-55)||(17225875-17225927)
chr6 (3-75)||(25195853-25195925)
chr6 (29-75)||(765422-765468)
chr6 (3-51)||(34027427-34027475)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 40662989 - 40663220
Alignment:
Q  1 taagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgattt 100  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40662989 taagttgaattataaatttgtgtgtta--atcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctataaaattgattt 40663086  T
Q  101 ctcnnnnnnntgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaaccaaacaccctctta 200  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  40663087 ctcaaaaaaatgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttatggcatctaaaagtgaaaacaaacaccctctta 40663186  T
Q  201 atccatttccatcatctcaaactattacgagcgt 234  Q
    ||||||||||||||||||||||||||||||||||    
T  40663187 atccatttccatcatctcaaactattacgagcgt 40663220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 34915141 - 34915014
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttct 102  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||||||||| | |||||| || |||||||  ||||||||  ||||||||||||||    
T  34915141 agttgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacaaagaatagcttcaactagaatttcttttagtcctcaaaattgatttct 34915042  T
Q  103 cnnnnnnntgtcaaatataattttatag 130  Q
    |       ||||||| ||||||||||||    
T  34915041 caaaatcatgtcaaacataattttatag 34915014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 16556555 - 16556456
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttct 102  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||| |  ||||| ||| ||  ||| || ||||||||||||| ||||| ||||||||    
T  16556555 agttgaattatgaatttgtgtgtcagaatcaattctagaatcaaaagttgtaaatagtagtttcgagtcgagttgtttttagtctccaaaactgatttct 16556456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 28267921 - 28268100
Alignment:
Q  5 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttctcn 104  Q
    ||||||||||||||| || |||| ||| |||||| |||||| || ||||||| | || ||  ||||||||||  ||||||||| ||||||||||||||      
T  28267921 ttgaattataaatttatgcgttaaaattaattctagaatcataaactacaaa-agtacct--aagtagaattccttttagtctccaaaattgatttct-a 28268016  T
Q  105 nnnnnntgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaacca 188  Q
          || |||| | |||||||| ||||   |||||||||||||| ||||||| ||||| |||| ||||||||||||||||||    
T  28268017 aaaaaatgccaaacaaaattttatggagttagaattgcttttgacacttgaaaaacacttctaagacatctaaaagtgaaacca 28268100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 11049323 - 11049253
Alignment:
Q  5 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||| ||||||||||||||| | |||||||| | |||||||||||||||||| ||||||| |||||||||    
T  11049323 ttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaat 11049253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 47899330 - 47899231
Alignment:
Q  1 taagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgattt 100  Q
    |||||||||| |||| ||||||| |||  ||||| |||  ||| |||| ||||||||| ||||||  |||||||||||||||||||  ||||||||||||    
T  47899330 taagttgaatcataagtttgtgtttta--atcaaatctaaaataaaaaactacaaatagtagcttctagtagaattgtttttagtcctcaaaattgattt 47899233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 7524188 - 7524120
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagta 71  Q
    ||||||| ||||||||||||||| | ||||||||||  ||||||||||||||||| ||| ||| |||||    
T  7524188 agttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatcctaacttcaagta 7524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 28287346 - 28287417
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaa 74  Q
    |||||||  ||||||||| |||||| ||||||||||  ||||||||||||||||| || |||| ||||||||    
T  28287346 agttgaacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaa 28287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 28083909 - 28083970
Alignment:
Q  14 aaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||||||| | ||| |||| | |||||||||||||||||| ||||||| |||||||||    
T  28083909 aaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaat 28083970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 30557577 - 30557507
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| ||||||||||||||  | |||||||||| ||||||||| |||||||| ||||||| || ||||||    
T  30557577 agttgaactataaatttgtgtg--aaaatcaattctagaatcaaaaactacaaatcctagcttcaactagaat 30557507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 36660503 - 36660556
Alignment:
Q  13 taaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagcttt 66  Q
    ||||||||||||||||| |||||| | ||||||||||||| ||||| |||||||    
T  36660503 taaatttgtgtgttagattcaattttagaatcaaaagctagaaatagtagcttt 36660556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 47892417 - 47892470
Alignment:
Q  22 gtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||| |||||||||| |||||||||||| ||| | |||||||||||||||||    
T  47892417 gtgttaaaatcaattctagaatcaaaagcttcaatttctagctttaagtagaat 47892470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 1514418 - 1514346
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||  |||||||||||||| | |||||||| |  ||| ||||||||||||| ||||||| |||||||||    
T  1514418 agttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaat 1514346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 3515893 - 3515821
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||| |||| |||| |||| | |||||||||| |||| ||||||||||| | ||||||| |||||||||    
T  3515893 agttgaatgataattttgagtgtaaaaatcaattctagaatgaaaagctacaatttctagcttcaagtagaat 3515821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 30850409 - 30850481
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| ||||||||||| ||||| ||||||||||  ||| |||| |||||||| |||| || |||||||||    
T  30850409 agttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaat 30850481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 2555976 - 2555941
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattct 38  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2555976 agttgaattataaatttgtatgttagaatcaattct 2555941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 52059337 - 52059303
Alignment:
Q  68 agtagaattgtttttagtctacaaaattgatttct 102  Q
    |||||||||||||||||||| ||||||||||||||    
T  52059337 agtagaattgtttttagtctccaaaattgatttct 52059303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 51500870 - 51500915
Alignment:
Q  29 aatcaattcttgaatcaaaagctacaaatactagctttaagtagaa 74  Q
    |||||||||| |||||||||||||||||| |||| || ||||||||    
T  51500870 aatcaattctagaatcaaaagctacaaatcctaggttcaagtagaa 51500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 15368448 - 15368259
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttct 102  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| ||||| || |||||| ||||||||||| |||||||   ||||||||||||||    
T  15368448 agttgaattataaatttgtgtgttagaatcaattctataatcaaaagttacaactagtagcttcaagtagaattgcttttagttcccaaaattgatttct 15368349  T
Q  103 cnnnnnnntgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaaccaaacac 193  Q
    |       || || | |||||||||||||||  | |||||||||  || ||||||||||||| || | |||||| ||||||||||||||||    
T  15368348 cgataaaatgccatacataattttatagagt-aagattgcttttagcacttgaaaagcacttctaggacatctagaagtgaaaccaaacac 15368259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 2937600 - 2937689
Alignment:
Q  11 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgattt 100  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||||||||  |||||||   ||||||||||||    
T  2937600 tataaatttgtgtgttataatcaattctagaatcaaaggctacaaatagtagctttaagtagaatttcttttagttcccaaaattgattt 2937689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 29822054 - 29821954
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttga----atcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgat 98  Q
    |||||||| |||||||||| ||||||||||||||  | |    ||||||| ||||||||| |||||| || |||||||||||||| ||| ||||||||||    
T  29822054 agttgaatgataaatttgtatgttagaatcaattaattataaaatcaaaaactacaaataatagcttcaaatagaattgtttttaatctccaaaattgat 29821955  T
Q  99 t 99  Q
    |    
T  29821954 t 29821954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 6951317 - 6951387
Alignment:
Q  5 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||||| |||||   |||||||| | |||||||||||||||||| ||| ||| |||||||||    
T  6951317 ttgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaat 6951387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 2864502 - 2864461
Alignment:
Q  152 ttgaaaagcacttttaaggcatctaaaagtgaaaccaaacac 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  2864502 ttgaaaagcacttctaaagcatctaaaagtgaaaccaaacac 2864461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 9818810 - 9818737
Alignment:
Q  3 agttgaattataaatttgtgtgttagaa-tcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| ||||||||||||| | | || |||||||| ||||||||||||||||||  |||||| |||||||||    
T  9818810 agttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 9818737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 18851100 - 18851164
Alignment:
Q  11 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| ||||||| | ||||||||||  |||||||||||||||||  |||||| |||||||||    
T  18851100 tataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 18851164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 22226256 - 22226318
Alignment:
Q  13 taaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||| | | | ||||||  ||||||||||||||||||||| ||| |||||||||    
T  22226256 taaatttgtgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaat 22226318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 2937731 - 2937776
Alignment:
Q  149 catttgaaaagcacttttaaggcatctaaaagtgaaaccaaacacc 194  Q
    |||||||||||||||| || ||||||||||  ||||||||||||||    
T  2937731 catttgaaaagcacttctatggcatctaaacatgaaaccaaacacc 2937776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 42858183 - 42858115
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagta 71  Q
    ||||||| ||||||||||||||| | |||||||| | |||| ||||||| ||||| ||| ||| |||||    
T  42858183 agttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagta 42858115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 31708249 - 31708435
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttct 102  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  |||| ||||| ||||||||  | |||||||||| |    
T  31708249 agttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaatagtagcttcgagtataattgcttttagtcctcgaaattgatttat 31708348  T
Q  103 cnnnnnnntgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaaccaaacac 193  Q
    |       || |||| ||||||   || |||   | ||||||||| || ||||||||||||| | ||||||||||||||||||| ||||||    
T  31708349 c-aaaaaatgccaaacataatt---tatagttagagttgcttttggcacttgaaaagcacttattaggcatctaaaagtgaaacaaaacac 31708435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 31013093 - 31012914
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttct 102  Q
    ||||||||| |||||||||||||||||||||||||| || ||||| |||||||||| ||| || ||||||||||| ||||||||  |||||||||||| |    
T  31013093 agttgaattctaaatttgtgtgttagaatcaattctagattcaaaggctacaaatagtaggttcaagtagaattgcttttagtccccaaaattgatttat 31012994  T
Q  103 cnnnnnnntgtcaaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaa 185  Q
            || |||| |||| |||||||||| | | ||||||||| || ||||||||||||| ||||||||||| ||||||||    
T  31012993 -tgaaaaatgccaaacataa-tttatagagt-tgagttgcttttggcacttgaaaagcacttataaggcatctagaagtgaaa 31012914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 31492839 - 31492768
Alignment:
Q  5 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattg 77  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||| || ||||||||    
T  31492839 ttgaattataaatttgtgtgtta-aatcaattctagaatcaaaagctacaaatagttgcttcaaatagaattg 31492768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 24649424 - 24649472
Alignment:
Q  54 aaatactagctttaagtagaattgtttttagtctacaaaattgatttct 102  Q
    ||||| || ||||||||| |||||||||||||||||||||||| |||||    
T  24649424 aaataataactttaagtaaaattgtttttagtctacaaaattgttttct 24649472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 40147860 - 40147932
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||| |||||||   |||||  |||||||||| |||||||||||| ||||| ||||||| |||||||||    
T  40147860 agttgaatgataaattcaagtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaat 40147932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 14021913 - 14021835
Alignment:
Q  114 caaatataattttatagagtgtaaattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaaccaaacac 193  Q
    |||| |||||||||| ||||   ||||||||||| || ||||||| ||||| |||| |||||| ||||||||||||||||    
T  14021913 caaacataattttatggagttagaattgcttttgtcacttgaaaaacacttctaag-catctagaagtgaaaccaaacac 14021835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 27266804 - 27266876
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||  ||||||||| |||| | ||| |||||||||||||  |||||||| | ||||||| |||||||||    
T  27266804 agttgaacaataaatttgagtgtaaaaattaattcttgaatcattagctacaatttctagcttcaagtagaat 27266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 32523360 - 32523404
Alignment:
Q  13 taaatttgtgtgttagaatcaattcttgaatcaaaagctacaaat 57  Q
    ||||||||||||| | |||||||| | ||||||||||||||||||    
T  32523360 taaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaat 32523404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 41596167 - 41596211
Alignment:
Q  11 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaa 55  Q
    |||||| |||||||| | ||||||||||| |||||||||||||||    
T  41596167 tataaacttgtgtgtaaaaatcaattctttaatcaaaagctacaa 41596211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 46853544 - 46853592
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagct 51  Q
    |||||||  ||||||||| |||||| |||||||||| ||||||||||||    
T  46853544 agttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 46853592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 52965864 - 52965942
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttt 81  Q
    ||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||| || ||| ||||||||| |||||    
T  52965864 agttgaattataaatttatgtgttagaatcaattttagaatcaaaagctataaatagtaacttcaagtagaatcgtttt 52965942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 38716636 - 38716545
Alignment:
Q  2 aagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgattt 100  Q
    ||||||||||||||||||||  |||||||||||       ||||||||||||||||| |||||| || |||||||||||||| ||| ||||||||||||    
T  38716636 aagttgaattataaatttgtaagttagaatcaa-------atcaaaagctacaaatagtagcttcaactagaattgtttttaatctccaaaattgattt 38716545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 32818380 - 32818452
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| ||||||||||||||  | |||||||||| |||||||||||||||||| ||||||| || ||||||    
T  32818380 agttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaat 32818452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 45011944 - 45011895
Alignment:
Q  8 aattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaat 57  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||    
T  45011944 aattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaat 45011895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 8604640 - 8604704
Alignment:
Q  11 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||||| | |||||||||| ||||| ||||||||||||  |||||| |||||||||    
T  8604640 tataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaat 8604704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 35065130 - 35065070
Alignment:
Q  11 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagta 71  Q
    ||||||||||||||| | |||||||||| ||||||||||  |||||||||||||| |||||    
T  35065130 tataaatttgtgtgtaaaaatcaattctagaatcaaaagtcacaaatactagcttcaagta 35065070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 1048783 - 1048720
Alignment:
Q  12 ataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||| |||| |||||||||| | |||| |||||||| |||| ||| |||||||||||||    
T  1048783 ataaatttgagtgtaagaatcaattatagaattaaaagctataaattctaactttaagtagaat 1048720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 53655243 - 53655146
Alignment:
Q  5 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttctc 103  Q
    ||||| ||||||||||||||||| |||  ||| |  |||| ||| ||  ||||| |||||| |||||||| |||||||||||| | |||||||||||||    
T  53655243 ttgaactataaatttgtgtgttaaaattgattttaaaatccaaatctttaaataatagcttcaagtagaaatgtttttagtcttc-aaattgatttctc 53655146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 21691223 - 21691276
Alignment:
Q  4 gttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaat 57  Q
    |||||| ||||||||||||||| | ||||||||||  || ||||||||||||||    
T  21691223 gttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaat 21691276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 44278979 - 44279056
Alignment:
Q  5 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgttttt 82  Q
    |||||||| |||||| |||||||||||||||| |  ||| ||||| |||| ||| ||| || ||||||||||| ||||    
T  44278979 ttgaattaaaaatttatgtgttagaatcaattttaaaataaaaagatacatatagtagtttcaagtagaattgatttt 44279056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 1616449 - 1616394
Alignment:
Q  19 tgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||  ||||||||||| ||||||||||||||||||  |||| |||||||||||    
T  1616449 tgtgtgtgggaatcaattctagaatcaaaagctacaaattgtagc-ttaagtagaat 1616394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 6463944 - 6463888
Alignment:
Q  137 aattgcttttgacatttgaaaagcacttttaaggcatctaaaagtgaaaccaaacac 193  Q
    ||||| ||||| || ||||||||||||| | |||||| |||||||||||| ||||||    
T  6463944 aattgtttttgccaattgaaaagcacttctgaggcatttaaaagtgaaacaaaacac 6463888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 26617543 - 26617471
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||||||| | | | | |||||||| |  |||||||||||||| || ||||||| |||||||||    
T  26617543 agttgaattataaatttatctataaaaatcaattttataatcaaaagctacagattctagcttcaagtagaat 26617471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 30357579 - 30357515
Alignment:
Q  11 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||||| | |||||||| |  |||||||||||||||||   ||||| |||||||||    
T  30357579 tataaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaat 30357515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33844054 - 33843990
Alignment:
Q  1 taagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctt 65  Q
    |||||||||  ||||||||| |||||| |||||||| | |||||||||||| ||| | |||||||    
T  33844054 taagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagctt 33843990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 53655095 - 53655047
Alignment:
Q  152 ttgaaaagcacttttaaggcatctaaaagtgaaaccaaacaccctctta 200  Q
    ||||||| ||||| |||| ||||||| |||||||||||||| |||||||    
T  53655095 ttgaaaaacacttataagacatctaagagtgaaaccaaacatcctctta 53655047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 41386825 - 41386897
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||||||||||||| |  ||||||||| |||| ||||||||||||| ||||||| |||||||||    
T  41386825 agttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaat 41386897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 1442638 - 1442557
Alignment:
Q  13 taaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaat 94  Q
    ||||||||||| |||||||||||| | ||||||||||||| | ||| || ||| ||||||||||| ||||||| | ||||||    
T  1442638 taaatttgtgttttagaatcaattatagaatcaaaagctatacataataacttcaagtagaattgcttttagtatccaaaat 1442557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 27571937 - 27571865
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||| ||||| ||| |||||| |||||||||| |||||||||||| ||| | ||| ||| |||||||||    
T  27571937 agttgaataataaacttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaat 27571865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 32295259 - 32295228
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaa 34  Q
    ||||||||||||||||||||||||||||||||    
T  32295259 agttgaattataaatttgtgtgttagaatcaa 32295228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 28725081 - 28725130
Alignment:
Q  22 gtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagta 71  Q
    |||| |||||||||| | |||||||||||||||||| ||||||| |||||    
T  28725081 gtgtgagaatcaattatagaatcaaaagctacaaattctagcttcaagta 28725130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 42816480 - 42816524
Alignment:
Q  5 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaag 49  Q
    ||||||||||||||||||||| | |||||||||| |||| |||||    
T  42816480 ttgaattataaatttgtgtgtgaaaatcaattctagaattaaaag 42816524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 5533041 - 5533115
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattg 77  Q
    ||||||||||||||||| ||||||  ||||||||   ||||||||||||||||||| |||||| |||||||||||    
T  5533041 agttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaatagtagcttcaagtagaattg 5533115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 42982610 - 42982547
Alignment:
Q  12 ataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||||||||| | |||||||||| |||||||||||||||| | ||||||| |||||||||    
T  42982610 ataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaat 42982547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 43501198 - 43501128
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||| |||||||  |||||||||||||  ||||||||||||||||| |||| || |||||||||    
T  43501198 agttgaattataattttgtgt--tagaatcaattctaaaatcaaaagctacaaatcctagtttcaagtagaat 43501128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 17281485 - 17281383
Alignment:
Q  2 aagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagt-ctacaaaattgattt 100  Q
    ||||| |||||||||||||||| ||| |||||||| |  |||  ||||||||| ||| |||||| ||||| ||||||||| ||| ||  |||||||||||    
T  17281485 aagttcaattataaatttgtgtattaaaatcaattttaaaattgaaagctacagatagtagcttcaagtataattgttttaagtcctcaaaaattgattt 17281386  T
Q  101 ctc 103  Q
    |||    
T  17281385 ctc 17281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 42741042 - 42740980
Alignment:
Q  13 taaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||| |||| | |||||||||| ||||||||||||||||||  |||||| |||||||||    
T  42741042 taaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaat 42740980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31415412 - 31415375
Alignment:
Q  1 taagttgaattataaatttgtgtgttagaatcaattct 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31415412 taagttgaattataaatttgtgtgtaagaatcaattct 31415375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 30503258 - 30503212
Alignment:
Q  29 aatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||||||||||||||| ||| || |||| |||||||||    
T  30503258 aatcaattcttgaatcaaaagctacgaatcctggcttcaagtagaat 30503212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 33019166 - 33019228
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctt 65  Q
    ||||||| ||||||||| ||||| | ||||||||||  || |||||||||||||| |||||||    
T  33019166 agttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagctt 33019228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 4662913 - 4662985
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| |||| |||||||||| | |||||||||| ||| |||||||||||||| ||||||| |||||||||    
T  4662913 agttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaagtagaat 4662985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 13384664 - 13384736
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||  |||||| || ||||||    
T  13384664 agttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaat 13384736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 32927967 - 32927895
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| ||||||||||||||| | ||| ||||||  ||||||||||||||||| ||||||| |||||||||    
T  32927967 agttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaat 32927895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35495067 - 35494993
Alignment:
Q  1 taagttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||| |||| |||||||||| | || ||||||| |||||||||||||||||| ||||||| | |||||||    
T  35495067 taagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagcttcatgtagaat 35494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 38868573 - 38868501
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| ||||||||||||||| | |||||||| | ||| ||||||||||||||  |||||| |||||||||    
T  38868573 agttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaat 38868501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 26100156 - 26100227
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaa 74  Q
    |||||||  |||||||||||||| | |||||||| | |||||||||||||||||| ||||||| || |||||    
T  26100156 agttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaa 26100227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 15677825 - 15677898
Alignment:
Q  3 agttgaattataaatttgtgtgttagaa-tcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| ||||||||||||||| | || ||||||||  |||||||||||| |||| ||||||| |||||||||    
T  15677825 agttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaat 15677898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 37684480 - 37684408
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||||||| ||  ||| |||||||| | ||||||||||| |||||| ||| ||| |||||||||    
T  37684480 agttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagtagaat 37684408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 32994260 - 32994324
Alignment:
Q  11 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||| | | |||||||||| || |||||||||| ||||  |||||| |||||||||    
T  32994260 tataaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaat 32994324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 10669486 - 10669573
Alignment:
Q  16 atttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaattgtttttagtctacaaaattgatttctc 103  Q
    |||| |||||||||||||||||  |||| |||| ||||||||| || ||| ||||||| || |||||||||| |||||||||| ||||    
T  10669486 atttttgtgttagaatcaattccagaataaaaaactacaaatagtaccttcaagtagatttatttttagtctccaaaattgatctctc 10669573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 4910975 - 4910911
Alignment:
Q  11 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||| ||| | |||||||||| ||||||||||||||||||  |||||| |||||||||    
T  4910975 tataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 4910911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 6654102 - 6654173
Alignment:
Q  5 ttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaatt 76  Q
    ||||| ||||||||| ||||| | |||||| ||| |||| ||||||||||||| ||||||| ||||||||||    
T  6654102 ttgaactataaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaatt 6654173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 46298 - 46355
Alignment:
Q  3 agttgaattataaa--tttgtgtgttagaatcaattcttgaatcaaaagctacaaata 58  Q
    ||||||||||||||  ||||| |||||||||| ||||| |||||||||||||||||||    
T  46298 agttgaattataaaaatttgtttgttagaatctattctagaatcaaaagctacaaata 46355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 1485156 - 1485228
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||  ||||||||| |||||| |||||||||| |||||||||||| ||| | |||| || |||||||||    
T  1485156 agttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaagtagaat 1485228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 7952727 - 7952791
Alignment:
Q  11 tataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||||||||||| | |  ||||||| |||||||||||||||||| || |||| |||||||||    
T  7952727 tataaatttgtgtgtgaaacccaattctagaatcaaaagctacaaatcctcgcttcaagtagaat 7952791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17225927 - 17225875
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaa 55  Q
    ||||||| ||||||||||| ||| | |||||||||| ||||||||||||||||    
T  17225927 agttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaa 17225875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 25195925 - 25195853
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    ||||||| |||||||||||||||   | |||||||| ||||||||||||| |||| |||| ||||| ||||||    
T  25195925 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagttttaattagaat 25195853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 765422 - 765468
Alignment:
Q  29 aatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 75  Q
    |||||||||| ||||||||||||||||||  |||||| |||||||||    
T  765422 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaat 765468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 34027427 - 34027475
Alignment:
Q  3 agttgaattataaatttgtgtgttagaatcaattcttgaatcaaaagct 51  Q
    |||||||| ||||||||| |||| | |||||||||| ||||||||||||    
T  34027427 agttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University