View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18514_low_17 (Length: 238)
Name: NF18514_low_17
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18514_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 40662959 - 40662743
Alignment:
| Q |
8 |
gcaactaactataagtcagaatcaattcactcaa--ttaattcttgtcaaagcagaaccaaacatacactaaatgcaaccacatatgacccaccttcaat |
105 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40662959 |
gcaactaactataagtcagaatcaattcactcaaaattaattcttgtcaaaacagaaccaaacatacactaaatgcaaccacatatgaccggccttcaat |
40662860 |
T |
|
| Q |
106 |
ctaaagtatcggtgctacatacatacactacaagctgataagaaagtagaaattcagaaaatataaccttgaatttgagaattagaaatgttcaaagaag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40662859 |
ctaaagtatcggtgctacatacatacactacaagctgaaaagaaagtagaaattcagaaaatataaccttgaatttgagaattagaaatgttcaaagaag |
40662760 |
T |
|
| Q |
206 |
catctttactggaaagt |
222 |
Q |
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||||||||||||||||| |
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| T |
40662759 |
catctttactggaaagt |
40662743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 51500134 - 51500080
Alignment:
| Q |
15 |
actataagtcagaatcaattcactcaattaattcttgtcaaagcagaaccaaaca |
69 |
Q |
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| T |
51500134 |
actattagtcaaaatcaattcactcaattaattcttgtcaacgcagaaccaaaca |
51500080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 31708170 - 31708136
Alignment:
| Q |
44 |
aattcttgtcaaagcagaaccaaacatacactaaa |
78 |
Q |
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| T |
31708170 |
aattcttgtcaaagcagaaccaaacatacactaaa |
31708136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 42484452 - 42484399
Alignment:
| Q |
24 |
cagaatcaattcactca--attaattcttgtcaaagcagaaccaaacatacact |
75 |
Q |
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| T |
42484452 |
cagaatcaattcactcataattaattcttgtcaaagcagaagtaaacatacact |
42484399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 36550116 - 36550068
Alignment:
| Q |
21 |
agtcagaatcaattcactcaattaattcttgtcaaagcagaaccaaaca |
69 |
Q |
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||||| |||||||||||||||| |||||||||||| ||||| ||||||| |
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| T |
36550116 |
agtcaaaatcaattcactcaatcaattcttgtcaatgcagatccaaaca |
36550068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 31013167 - 31013218
Alignment:
| Q |
26 |
gaatcaattcactcaa--ttaattcttgtcaaagcagaaccaaacatacact |
75 |
Q |
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|||||||||||||||| | |||||||| ||||||||||||||| ||||||| |
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| T |
31013167 |
gaatcaattcactcaaaatcaattcttgccaaagcagaaccaaatatacact |
31013218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 20712769 - 20712712
Alignment:
| Q |
21 |
agtcagaatcaattcactcaattaattcttgtcaaagcagaaccaaacatacactaaa |
78 |
Q |
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|||| |||||||||||||||| ||||||| ||| |||||||||||||||| |||||| |
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| T |
20712769 |
agtcggaatcaattcactcaaccaattcttatcacagcagaaccaaacataaactaaa |
20712712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 117431 - 117383
Alignment:
| Q |
27 |
aatcaattcactcaattaattcttgtcaaagcagaaccaaacatacact |
75 |
Q |
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|||||||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
117431 |
aatcaattcactcaatcaatttttgtcaacacagaaccaaacatacact |
117383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 9818868 - 9818920
Alignment:
| Q |
25 |
agaatcaattcactcaa--ttaattcttgtcaaagcagaaccaaacatacact |
75 |
Q |
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|
||||||||||||||||| | ||||||||||| ||||||||||||||||||| |
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|
| T |
9818868 |
agaatcaattcactcaaaataaattcttgtcaccgcagaaccaaacatacact |
9818920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 35757106 - 35757058
Alignment:
| Q |
27 |
aatcaattcactcaattaattcttgtcaaagcagaaccaaacatacact |
75 |
Q |
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|||||||||||||||| |||| ||||||| ||||||||||||||||| |
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| T |
35757106 |
aatcaattcactcaatcaatttttgtcaatatagaaccaaacatacact |
35757058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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