View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18514_low_3 (Length: 616)

Name: NF18514_low_3
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18514_low_3
NF18514_low_3
[»] chr5 (17 HSPs)
chr5 (4-603)||(41702406-41703005)
chr5 (8-403)||(41469881-41470282)
chr5 (40-229)||(41524663-41524852)
chr5 (102-225)||(41504358-41504481)
chr5 (433-563)||(41469655-41469785)
chr5 (17-229)||(41515733-41515942)
chr5 (433-504)||(41499628-41499699)
chr5 (9-62)||(41499983-41500036)
chr5 (434-495)||(41509401-41509462)
chr5 (434-514)||(41499525-41499605)
chr5 (433-501)||(41515440-41515508)
chr5 (433-495)||(41519624-41519686)
chr5 (98-142)||(41499912-41499956)
chr5 (175-307)||(41509724-41509856)
chr5 (252-307)||(41519950-41520005)
chr5 (352-403)||(41524534-41524585)
chr5 (193-225)||(41499868-41499900)
[»] chr7 (3 HSPs)
chr7 (252-384)||(16638302-16638434)
chr7 (252-384)||(17457204-17457336)
chr7 (252-384)||(17595878-17596010)


Alignment Details
Target: chr5 (Bit Score: 588; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 4 - 603
Target Start/End: Original strand, 41702406 - 41703005
Alignment:
Q  4 tcacttttttctactaaagtttccacctttccaccatatcatgaacatggaacccaaaactgaaactgtgtcaccaccatatttccattttacaaaccct 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41702406 tcacttttttctactaaagtttccacctttccaccatatcatgaacatggaacccaaaactgaacctgtgtcaccaccatatttccattttacaaaccct 41702505  T
Q  104 aacaacaaccttgaagataagtctattcatgatcttgttctggtactgcgtggaacttgtcaatgggaaacttttgacagtgttgaagctgttttggaga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702506 aacaacaaccttgaagataagtctattcatgatcttgttctggtactgcgtggaacttgtcaatgggaaacttttgacagtgttgaagctgttttggaga 41702605  T
Q  204 gtagggatataagactcagagaagagaatcaaaagttgcaacaagactttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702606 gtagggatataagactcagagaagagaatcaaaagttgcaacaagactttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttc 41702705  T
Q  304 aaggttgcatgctgagtttgagtttagaaaaagagaagaaatatgttcgaaagtgcaagaaaattatgaagctctcttgaaagaggttaaggtaaataga 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702706 aaggttgcatgctgagtttgagtttagaaaaagagaagaaatatgttcgaaagtgcaagaaaattatgaagctctcttgaaagaggttaaggtaaataga 41702805  T
Q  404 aaaagtaatgaagcgttagaaaagaagaacaatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaa 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702806 aaaagtaatgaagcgttagaaaagaagaacaatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaa 41702905  T
Q  504 agaaaaaatgggaggaagatgatattgaattgggtgtgttaagaaaaatgattggtgaatcacagattaaaattggagaattggaggaaacagtaaagaa 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  41702906 agaaaaaatgggaggaagatgatattgaattgggtgtgttaagaaaaatgattggtgaattacagagtaaaattggagaattggaggaaacagtaaagaa 41703005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 41470282 - 41469881
Alignment:
Q  8 ttttttctactaaagtttccacctttccaccatatcatgaacatggaacccaaaactgaaactgtgtcaccaccatatttccattttacaaaccctaaca 107  Q
    |||||||| ||||||||||||||||| || |||||||| |||||| |||||||||||||| | | |||||||||| ||| | |||  |||||||||||||    
T  41470282 ttttttcttctaaagtttccaccttttcagcatatcatcaacatgcaacccaaaactgaacccgggtcaccaccagattccaattccacaaaccctaaca 41470183  T
Q  108 acaaccttgaagataagtctattcatgatcttgttctggtactgcgtggaacttgtcaatgggaaacttttgacagtgttgaagctgttttggagagtag 207  Q
    |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  41470182 at---cttgaagataagtctattcatgatcttgttctggtactgcgtggaacttgtcaatgggaaacttttgatagtgttgaagctgttttggagaatag 41470086  T
Q  208 ggatataagactcagagaagagaatcaaaagttgcaacaagactttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaagg 307  Q
    | |||| ||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||||||| |||| || || || | |||| ||||||||||    
T  41470085 gtatatgagactcagagaggagaatcaaaagttgcaacaaagctttgaaatggagagacttaagcttagagaggagtttcacttagagagactttcaagg 41469986  T
Q  308 ttgcatgctgagtttgagtttagaaaaagagaagaaat---------atgttcgaaagtgcaagaaaattatgaagctctcttgaaagaggttaaggtaa 398  Q
     |  ||||||||| ||||||||  |||||||| |||||         | ||  ||||||  |||||| |||||||||||| |||||||| ||||||||||    
T  41469985 gtatatgctgagtctgagtttaagaaaagagaggaaatttgtgagaaaggtaagaaagtaaaagaaagttatgaagctcttttgaaagaagttaaggtaa 41469886  T
Q  399 ataga 403  Q
    |||||    
T  41469885 ataga 41469881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 41524852 - 41524663
Alignment:
Q  40 tatcatgaacatggaacccaaaactgaaactgtgtcaccaccatatttccattttacaaaccctaacaacaaccttgaagataagtctattcatgatctt 139  Q
    ||||||||||||  |||||||||||||| ||| ||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  41524852 tatcatgaacattcaacccaaaactgaacctgggtcaccaccatgtttccattccacaaaccctaacaacaaccttgaagataagtctattcatgatctt 41524753  T
Q  140 gttctggtactgcgtggaacttgtcaatgggaaacttttgacagtgttgaagctgttttggagagtagggatataagactcagagaagag 229  Q
    ||| |||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||| |||| |||| |||||||||||||||    
T  41524752 gttatggtactgcgtcaaacttgtcaatgggaaacttttgatagtgttgaaactgttttggagaataggtatatgagactcagagaagag 41524663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 41504481 - 41504358
Alignment:
Q  102 ctaacaacaaccttgaagataagtctattcatgatcttgttctggtactgcgtggaacttgtcaatgggaaacttttgacagtgttgaagctgttttgga 201  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||||| ||  ||||||||||||||||    
T  41504481 ctaacaacaatcttgaagataagtctattcatgatcttgttatggtattgcgtggaacatgtcaatgggacacttttgatagcattgaagctgttttgga 41504382  T
Q  202 gagtagggatataagactcagaga 225  Q
    ||| |||||||| ||||| |||||    
T  41504381 gaggagggatatgagacttagaga 41504358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 433 - 563
Target Start/End: Complemental strand, 41469785 - 41469655
Alignment:
Q  433 caatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaaagaaaaaatgggaggaagatgatattgaa 532  Q
    |||||||||||||||  |||||| ||||||||||||||||||| |||||||||| ||||| || ||| | ||||||||||||||||||||||| ||||||    
T  41469785 caatgaagttgatgtaataagaacaaagattgttgaattagaggatgaagttttagagttaaacaagattaagaaaaaatgggaggaagatgacattgaa 41469686  T
Q  533 ttgggtgtgttaagaaaaatgattggtgaat 563  Q
    |||||||  ||||||||||||  ||||||||    
T  41469685 ttgggtgaattaagaaaaatgtctggtgaat 41469655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 41515942 - 41515733
Alignment:
Q  17 ctaaagtttccacctttccaccatatcatgaacatggaacccaaaactgaaactgtgtcaccaccatatttccattttacaaaccctaacaacaaccttg 116  Q
    ||||||||| ||||||||  |  ||||||||||||  ||||||||  |||| ||| ||||||||||  ||||||||  ||||| |||||| ||    |||    
T  41515942 ctaaagttttcacctttctgctttatcatgaacattcaacccaaagttgaacctgggtcaccaccaggtttccattccacaaatcctaacgact---ttg 41515846  T
Q  117 aagataagtctattcatgatcttgttctggtactgcgtggaacttgtcaatgggaaacttttgacagtgttgaagctgttttggagagtagggatataag 216  Q
    || | |||  ||||||||| |||||| ||||  | |||||||| ||||||| ||||| |||||| |||||||||||||||||||||| |||| |||| ||    
T  41515845 aaaaaaagagtattcatgagcttgttatggtgttacgtggaacgtgtcaattggaaatttttgatagtgttgaagctgttttggagaataggtatatgag 41515746  T
Q  217 actcagagaagag 229  Q
    |||||||||||||    
T  41515745 actcagagaagag 41515733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 504
Target Start/End: Complemental strand, 41499699 - 41499628
Alignment:
Q  433 caatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaaa 504  Q
    ||||||||||| ||||||||||| ||||||||||||||||||   |||| |||||||||||| ||| |||||    
T  41499699 caatgaagttggtgtgttaagaacaaagattgttgaattagaatctgaaattttggagttgaggaaattaaa 41499628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 41500036 - 41499983
Alignment:
Q  9 tttttctactaaagtttccacctttccaccatatcatgaacatggaacccaaaa 62  Q
    |||||||||||||||||||| ||||| ||||||||||||||||  |||||||||    
T  41500036 tttttctactaaagtttccaactttcgaccatatcatgaacattcaacccaaaa 41499983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 495
Target Start/End: Complemental strand, 41509462 - 41509401
Alignment:
Q  434 aatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaa 495  Q
    |||||| ||||| ||||||||| |||||  ||||||||||| ||||||||||||||||||||    
T  41509462 aatgaacttgatatgttaagaaaaaagaaggttgaattagacaatgaagttttggagttgaa 41509401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 41499605 - 41499525
Alignment:
Q  434 aatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaaagaaaaaatgg 514  Q
    |||||| ||| |||| |||||  || ||||| | |||||||| |||||||||||||||||| |||||| ||||||||||||    
T  41499605 aatgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttgaggaagttgaagaaaaaatgg 41499525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 501
Target Start/End: Complemental strand, 41515508 - 41515440
Alignment:
Q  433 caatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagtt 501  Q
    ||||||| || |||||||||||||||||| || ||||||||||  |||| |||||||||||| ||||||    
T  41515508 caatgaaatttatgtgttaagaagaaagaatggtgaattagagtctgaaattttggagttgaggaagtt 41515440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 41519686 - 41519624
Alignment:
Q  433 caatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaa 495  Q
    ||||||| ||||| ||||||||| |||||  | ||||||||| ||||||||||||||||||||    
T  41519686 caatgaacttgatatgttaagaaaaaagaagggtgaattagacaatgaagttttggagttgaa 41519624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 41499956 - 41499912
Alignment:
Q  98 aaccctaacaacaaccttgaagataagtctattcatgatcttgtt 142  Q
    |||||||| |||||||||||||||||  |||||||||||||||||    
T  41499956 aaccctaagaacaaccttgaagataatcctattcatgatcttgtt 41499912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 41509856 - 41509724
Alignment:
Q  175 ttttgacagtgttgaagctgttttggagagtagggatataagactcagagaagagaatcaaaagttgcaacaagactttgaaatggagagactaaagctt 274  Q
    ||||||||| ||||||| |||||||| |||||| ||| |  ||||||||||  | | ||||   ||||| ||  |  |||| ||||||||||||||||||    
T  41509856 ttttgacagagttgaaggtgttttggtgagtagagatgttggactcagagaccaaactcaacgcttgcagcagaatgttgatatggagagactaaagctt 41509757  T
Q  275 aaagagcagcttgacatggagatactttcaagg 307  Q
     ||||| ||||||| ||||||| |||| |||||    
T  41509756 caagaggagcttgaaatggagaaacttgcaagg 41509724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 41520005 - 41519950
Alignment:
Q  252 ttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaagg 307  Q
    ||||||||||||||||||||||| ||||| ||||| | ||||||| |||| |||||    
T  41520005 ttgaaatggagagactaaagcttcaagaggagcttaaaatggagaaacttgcaagg 41519950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 41524585 - 41524534
Alignment:
Q  352 gaaagtgcaagaaaattatgaagctctcttgaaagaggttaaggtaaataga 403  Q
    |||||| ||||||| |||||||||||| |||||||| |||||||| ||||||    
T  41524585 gaaagttcaagaaagttatgaagctcttttgaaagaagttaaggtgaataga 41524534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 41499900 - 41499868
Alignment:
Q  193 tgttttggagagtagggatataagactcagaga 225  Q
    ||||||||||||||||||| |||||||||||||    
T  41499900 tgttttggagagtagggatttaagactcagaga 41499868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 384
Target Start/End: Original strand, 16638302 - 16638434
Alignment:
Q  252 ttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaaggttgcatgctgagtttgagtttagaaaaagagaagaaatatgttc 351  Q
    ||||||||  ||||| ||||||| ||| | ||||| | ||||||| |||| ||||||| |||||||||   |||||||  |||||||| |||   ||| |    
T  16638302 ttgaaatgccgagacaaaagcttcaaggggagcttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaaccttgtcc 16638401  T
Q  352 gaaagtgcaagaaaattatgaagctctcttgaa 384  Q
    |||||  || |||  ||||||||||||||||||    
T  16638402 gaaagatcaggaatgttatgaagctctcttgaa 16638434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 384
Target Start/End: Complemental strand, 17457336 - 17457204
Alignment:
Q  252 ttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaaggttgcatgctgagtttgagtttagaaaaagagaagaaatatgttc 351  Q
    ||||||||  ||||| ||||||| ||| | ||||| | ||||||| |||| ||||||| |||||||||   |||||||  |||||||| |||   ||| |    
T  17457336 ttgaaatgccgagacaaaagcttcaaggggagcttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaaccttgtcc 17457237  T
Q  352 gaaagtgcaagaaaattatgaagctctcttgaa 384  Q
    |||||  || |||  ||||||||||||||||||    
T  17457236 gaaagatcaggaatgttatgaagctctcttgaa 17457204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 384
Target Start/End: Original strand, 17595878 - 17596010
Alignment:
Q  252 ttgaaatggagagactaaagcttaaagagcagcttgacatggagatactttcaaggttgcatgctgagtttgagtttagaaaaagagaagaaatatgttc 351  Q
    ||||||||  ||||| ||||||| ||| | ||||| | ||||||| |||| ||||||| |||||||||   |||||||  |||||||| |||   ||| |    
T  17595878 ttgaaatgccgagacaaaagcttcaaggggagcttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaaccttgtcc 17595977  T
Q  352 gaaagtgcaagaaaattatgaagctctcttgaa 384  Q
    |||||  || |||  ||||||||||||||||||    
T  17595978 gaaagatcaggaatgttatgaagctctcttgaa 17596010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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