View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18514_low_4 (Length: 417)
Name: NF18514_low_4
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18514_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 9105607 - 9105201
Alignment:
| Q |
1 |
atcagctcctcaacacaaagagaagaatatgcagcctatcgaaagtgagatgaatgatcagcctaccgaaaatagagtcaacacactcgtgagtgcatca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105607 |
atcagctcctcaacacaaagagaagaatatgcagcctaccgaaagtgagatgaacgatcagcctaccgaaaatagagtcaacacactcgtgagtgcatca |
9105508 |
T |
|
| Q |
101 |
ggtcctccacaaactgagaaaattaccgagcctaccaaaaagagagttagaggtgcaacgcgaatggcacattttttgcttaaacgtttgaatggtgaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105507 |
ggtcctccacaaactgagaaaattaccgagcctaccaaaaagagagttagaggtgcaacgcgaatggcacattttttgcttaaacgtttgaatggtgaaa |
9105408 |
T |
|
| Q |
201 |
agattccgattgacttcgatcaatataccaaaaagcctttaggggaaaacagnnnnnnnttcaaaagtcatgtgggttacattgctagaagcaaagtcag |
300 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105407 |
agattctgattgactttgatcaatataccaaaaagcctttaggggaaaactgaaaaaaattcaaaagtcatgtgggttacattgctagaagcaaagtcag |
9105308 |
T |
|
| Q |
301 |
tattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaatactatttatgattgtcagttgtaccact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105307 |
tattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaatactatttatgattgtcagttgtaccact |
9105208 |
T |
|
| Q |
401 |
taattat |
407 |
Q |
| |
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||||||| |
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|
| T |
9105207 |
taattat |
9105201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 193 - 407
Target Start/End: Complemental strand, 22819880 - 22819666
Alignment:
| Q |
193 |
tggtgaaaagattccgattgacttcgatcaatataccaaaaagcctttaggggaaaacagnnnnnnn-ttcaaaagtcatgtgggttacattgctagaag |
291 |
Q |
| |
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|||||||| ||| |||||||| |||||| || ||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
22819880 |
tggtgaaaggataccgattgaattcgatgtatgaaccaaaacgcctttaggggaatacagaagaaaaattcaaaagtcatgtgggttccattgctagaag |
22819781 |
T |
|
| Q |
292 |
caaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaatactatttatgattgtcagt |
391 |
Q |
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|||||| |||||||||||| || ||||||||||| |||||| |||| | |||||| ||||||| ||||||||||||||| ||||||||| |||||||||| |
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| T |
22819780 |
caaagttagtattttggtgaatcattgggatcttataagcg-gactattaaagaccagatttgagaagatatcatggtattactatttacgattgtcagt |
22819682 |
T |
|
| Q |
392 |
tgtaccacttaattat |
407 |
Q |
| |
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|||| ||||||||||| |
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|
| T |
22819681 |
tgtaacacttaattat |
22819666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 22819941 - 22819905
Alignment:
| Q |
3 |
cagctcctcaacacaaagagaagaatatgcagcctat |
39 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||| |
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|
| T |
22819941 |
cagctcctcaacataaagagaagaatatgcagactat |
22819905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 291 - 407
Target Start/End: Original strand, 41076322 - 41076438
Alignment:
| Q |
291 |
gcaaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaatactatttatgattgtcag |
390 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41076322 |
gcaaagtcagtatttttgtggatcattgggatcttgtaagcgagactgttaaagaccagatttaggaagatatcatggtaatactatttatgattgtcag |
41076421 |
T |
|
| Q |
391 |
ttgtaccacttaattat |
407 |
Q |
| |
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||||| ||||||||||| |
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|
| T |
41076422 |
ttgtaacacttaattat |
41076438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41076215 - 41076252
Alignment:
| Q |
1 |
atcagctcctcaacacaaagagaagaatatgcagccta |
38 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
41076215 |
atcagctcctcaacacaaagagaagaatatgcagccta |
41076252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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