View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18514_low_5 (Length: 400)
Name: NF18514_low_5
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18514_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 36355349 - 36355714
Alignment:
| Q |
12 |
atgaacaacaagcaacaatattagtggcacaaaggccaacaaaatcttcatttgaataaacatgtcctcgtacatgtattcatagtttatgtaccatgaa |
111 |
Q |
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| T |
36355349 |
atgaacaacaagcaacaatattagtggtacaaaggccaacaaaatcttcatttgaataaacatgtcctcgtacatgtattcatagtttatgtaccatgaa |
36355448 |
T |
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| Q |
112 |
aatgctaacacgaagaaaaggataactgtgaagaaacaaagatgaattgggatagagaaattttcccaagagtagtagctattgttgtatctggccatag |
211 |
Q |
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| T |
36355449 |
aatgctaacacgaagaaaaggataattgtgaagaaacaaagatgaattgggatagagaaattttcccaagagtagtagctattgttgtatctggccatag |
36355548 |
T |
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| Q |
212 |
atatggaaaatggaaattattgttcatgacgaaaagttatttaagattataaaaatgatctatagttcgagaggtttctagggactttgatttgaagaga |
311 |
Q |
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| T |
36355549 |
atatggaaaatggaaattattgttaatgacgaaaagttatttaaga-tataaaaatgatctatagttcgagaggtttctagggactttgatttgaagaga |
36355647 |
T |
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| Q |
312 |
ctgaatagtcaaaaaggtttatataaagagttggacaagtatgagtggatgaagttaaaagttatac |
378 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36355648 |
ctgattagtcaaaaaggttaatataaagagttggacaagtatgagtggatgaagttaaaagttatac |
36355714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 36354063 - 36354271
Alignment:
| Q |
12 |
atgaacaacaagcaacaatattagtggcacaaaggccaacaaaatcttcatttgaataaacatgtcctcgtacatgtattcatagtttatgtaccatgaa |
111 |
Q |
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|||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
36354063 |
atgaacaacaagcaacaataatagtggcacaagggacaacaaaatcttcacctgaataaacttgtcctcgtacacgtactcatagtttatgtaccatgaa |
36354162 |
T |
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| Q |
112 |
aatgctaacacgaagaaaaggataactgtgaagaaacaaagatgaattgggatagagaaattttcccaagagtagtagctattgttgtatctggccatag |
211 |
Q |
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||||||||||| ||||||||||| | |||| ||||||||||||| ||||| ||| |||| |||||| | |||||||||||||||||||| ||||||| |
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| T |
36354163 |
aatgctaacacaaagaaaaggatgaacatgaataaacaaagatgaactgggaaagaaaaatattcccagaaatagtagctattgttgtatcttgccatag |
36354262 |
T |
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| Q |
212 |
atatggaaa |
220 |
Q |
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||||||||| |
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| T |
36354263 |
atatggaaa |
36354271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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