View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18514_low_6 (Length: 385)
Name: NF18514_low_6
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18514_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 4470309 - 4469951
Alignment:
| Q |
15 |
tcaattgaagttgcaaattatattcaaagggttcttggagggactcttggatttgaatgtaccaatttaacaaggaaggataagtatgctattcttgcag |
114 |
Q |
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| T |
4470309 |
tcaattgaagttgcaaattatattcaaagggttcttggagggactcttggatttgaatgtaccaatttaacaaggaaggataagtatgctattcttgcag |
4470210 |
T |
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| Q |
115 |
gaacagatggaattgttagatctacaaagaaagattaaaattgaagggaacaaatgaatcaatttcgattttctatgcactactagaaaaagttgaatta |
214 |
Q |
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| T |
4470209 |
gaacagatggaattgttagatctacaaagaaagattaaaattgaagggaacaaatgaatcaatttcgattttctattcactactagaaaaagttgaatta |
4470110 |
T |
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| Q |
215 |
ttcaccaaattaaattacagatgaaaaatttaaaatttgtctttaattttgtcgctaaatgtcaaaacggcaaaattaaagactggttttataatttccg |
314 |
Q |
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| T |
4470109 |
ttcaccaaattaaattacagatgaaaaatttaaaatttgtctttaattttgtcgctaaatgtcaaaacggcaaatttaaagactggttttatctttttcg |
4470010 |
T |
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| Q |
315 |
tctgaaatttccgttgataattcannnnnnnnaatagtgattgattgccatgatgttta |
373 |
Q |
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| T |
4470009 |
tctgaaatttccgtcgataattcattttttttaatagtgattgattgccatgatgttta |
4469951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 24568375 - 24568269
Alignment:
| Q |
18 |
attgaagttgcaaattatattcaaagggttcttggagggactcttggatttgaatgtaccaatttaacaaggaaggataagtatgctattcttgcaggaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| || | |
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| T |
24568375 |
attgaagttgcaaattatattcaaagggttcttgctggaacacttggatttgagtgtactaatttaacaaggaaagataagtatgctatgcttgctggta |
24568276 |
T |
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| Q |
118 |
cagatgg |
124 |
Q |
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||||||| |
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| T |
24568275 |
cagatgg |
24568269 |
T |
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