View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18514_low_7 (Length: 355)

Name: NF18514_low_7
Description: NF18514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18514_low_7
NF18514_low_7
[»] chr2 (4 HSPs)
chr2 (12-355)||(20268543-20268885)
chr2 (12-355)||(20267338-20267680)
chr2 (12-168)||(33361247-33361403)
chr2 (305-351)||(33361197-33361243)
[»] chr1 (2 HSPs)
chr1 (48-169)||(49399915-49400036)
chr1 (10-77)||(49399796-49399863)
[»] chr4 (3 HSPs)
chr4 (47-169)||(52237948-52238070)
chr4 (308-354)||(52237803-52237849)
chr4 (16-68)||(52238076-52238128)
[»] chr3 (3 HSPs)
chr3 (48-169)||(44321129-44321249)
chr3 (264-355)||(44321357-44321449)
chr3 (12-54)||(44321000-44321042)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 20268543 - 20268885
Alignment:
Q  12 tcatcatcatgaatcagcccatcaccgccacagtcacaaatcagcccatcgtggccgtcatcacaacgacgacgttttcgtgtgattgagaaataggctg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  20268543 tcatcatcatgaatcagcccatcaccgccacagtcacaaatcagcccatcgtggccgtcatcacaacgacgacgtttttgtgtgattgagaaacaggctg 20268642  T
Q  112 agtttgcgtggattatctcccccgtgtcattaaaactaaccgctgaatttatttgttgcttgcacatggacaatgcaatggaattaaaatgcattaggat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  20268643 agtttgcgtggattatctcccccgtgtcattaaaactaaccgctgaatttatttgttgcttgcacatggacaatgcaatggaattaaaaggcattagggt 20268742  T
Q  212 aaatatcattagttcctttacaacagaataagttttgttttagannnnnnnnaattataattgttgggtaagaatatcattagttcaattttcaaacttc 311  Q
    ||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20268743 aaatatcattagttcctttacgacagaataagttttgttttaga-tttttttaattataattgttgggtaagaatatcattagttcaattttcaaacttc 20268841  T
Q  312 ttctattttgaaataggcatcagttctggaaaaagatacagaga 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20268842 ttctattttgaaataggcatcagttctggaaaaagatacagaga 20268885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 20267680 - 20267338
Alignment:
Q  12 tcatcatcatgaatcagcccatcaccgccacagtcacaaatcagcccatcgtggccgtcatcacaacgacgacgttttcgtgtgattgagaaataggctg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  20267680 tcatcatcatgaatcagcccatcaccgccacagtcacaaatcagcccatcgtggccgtcatcacaacgacgacgttttagtgtgattgagaaacaggctg 20267581  T
Q  112 agtttgcgtggattatctcccccgtgtcattaaaactaaccgctgaatttatttgttgcttgcacatggacaatgcaatggaattaaaatgcattaggat 211  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  20267580 agttagagtggattatctcccccgtgtcattaaaactaaccgctgaatttatttgttgcttgcacatggacaatgcaatggaattaaaaggcattagggt 20267481  T
Q  212 aaatatcattagttcctttacaacagaataagttttgttttagannnnnnnnaattataattgttgggtaagaatatcattagttcaattttcaaacttc 311  Q
    ||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20267480 aaatatcattagttcctttacgacagaataagttttgttttaga-cttttttaattataattgttgggtaagaatatcattagttcaattttcaaacttc 20267382  T
Q  312 ttctattttgaaataggcatcagttctggaaaaagatacagaga 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20267381 ttctattttgaaataggcatcagttctggaaaaagatacagaga 20267338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 33361403 - 33361247
Alignment:
Q  12 tcatcatcatgaatcagcccatcaccgccacagtcacaaatcagcccatcgtggccgtcatcacaacgacgacgttttcgtgtgattgagaaataggctg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33361403 tcatcatcatgaatcagcccatcaccgccacagtcacaaatcagcccatcgtggccgtcatcacaacgacgacgttttcgtgtgattgagaaacaggctg 33361304  T
Q  112 agtttgcgtggattatctcccccgtgtcattaaaactaaccgctgaatttatttgtt 168  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361303 agttggtgtggattatctcccccgtgtcattaaaactaaccgctgaatttatttgtt 33361247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 33361243 - 33361197
Alignment:
Q  305 aaacttcttctattttgaaataggcatcagttctggaaaaagataca 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33361243 aaacttcttctattttgaaataggcatcagttctggaaaaagataca 33361197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 49399915 - 49400036
Alignment:
Q  48 caaatcagcccatcgtggccgtcatcacaacgacgacgttttcgtgtgattgagaaataggctgagtttgcgtggattatctcccccgtgtcattaaaac 147  Q
    ||||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  49399915 caaatcagcccatcgtggctgccatcacaacgacggcgttttcatgtgattgagaaacaggttgagtttgcgtggattatctccccagtgtcattaaaac 49400014  T
Q  148 taaccgctgaatttatttgttg 169  Q
    ||||||||||||||||||||||    
T  49400015 taaccgctgaatttatttgttg 49400036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 49399796 - 49399863
Alignment:
Q  10 catcatcatcatgaatcagcccatcaccgccacagtcacaaatcagcccatcgtggccgtcatcacaa 77  Q
    |||||||||||||||||||||||||||||||||  |||||||||| || ||||| |||| ||| ||||    
T  49399796 catcatcatcatgaatcagcccatcaccgccaccatcacaaatcaaccaatcgtagccgccattacaa 49399863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 52238070 - 52237948
Alignment:
Q  47 acaaatcagcccatcgtggccgtcatcacaacgacgacgttttcgtgtgattgagaaataggctgagtttgcgtggattatctcccccgtgtcattaaaa 146  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||| ||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  52238070 acaaatcatcccatcgtggccgccatcacaacgacggcgttttcatgtgattaagaaacaggttgagtttgcgtggattatctaccccgtgtcattaaaa 52237971  T
Q  147 ctaaccgctgaatttatttgttg 169  Q
    |||||||||||||||||||||||    
T  52237970 ctaaccgctgaatttatttgttg 52237948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 52237849 - 52237803
Alignment:
Q  308 cttcttctattttgaaataggcatcagttctggaaaaagatacagag 354  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  52237849 cttcttctattttgaaatatgcatcagttatggaaaaatatacagag 52237803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 52238128 - 52238076
Alignment:
Q  16 catcatgaatcagcccatcaccgccacagtcacaaatcagcccatcgtggccg 68  Q
    ||||||||||||||||||||||||||| ||||| ||||| || ||||| ||||    
T  52238128 catcatgaatcagcccatcaccgccactgtcacgaatcaaccaatcgtagccg 52238076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 44321129 - 44321249
Alignment:
Q  48 caaatcagcccatcgtggccgtcatcacaacgacgacgttttcgtgtgattgagaaataggctgagtttgcgtggattatctcccccgtgtcattaaaac 147  Q
    |||||||||||||| |||||| |||||||||||| |||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||    
T  44321129 caaatcagcccatcatggccg-catcacaacgacaacgttttcatgtgattgagaaacaggttgagtttgcatggattatctcccccgtgtcatcaaaac 44321227  T
Q  148 taaccgctgaatttatttgttg 169  Q
    |||||||| |||| ||||||||    
T  44321228 taaccgcttaattgatttgttg 44321249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 44321357 - 44321449
Alignment:
Q  264 aattataattgttgggtaagaatatcattagttcaattttcaaacttcttcta-ttttgaaataggcatcagttctggaaaaagatacagaga 355  Q
    |||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||| ||||||| |||||  |||||||||||||||    
T  44321357 aattataattgttgggtaagaatatcatgagttcaactttcaagcttcttctatttttgaaacaggcatcggttctataaaaagatacagaga 44321449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 44321000 - 44321042
Alignment:
Q  12 tcatcatcatgaatcagcccatcaccgccacagtcacaaatca 54  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  44321000 tcatcatcatgaatcagcccatcaccgccaccgtcacgaatca 44321042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University