View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_high_1 (Length: 770)
Name: NF18515_high_1
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_high_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 733; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 19 - 770
Target Start/End: Original strand, 2680992 - 2681744
Alignment:
| Q |
19 |
atttgtcccatcaacagaaagtatgtttttatcattgatcaaaggagatcatgattccattcattgattaaagaaaaaccattaacataa-tccaaggca |
117 |
Q |
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| T |
2680992 |
atttgtcccatcaacagaaagtatgtttttatcattgatcaaaggagatcatgattccattcattgattaaagaaaaaccattaacattactccaaggca |
2681091 |
T |
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| Q |
118 |
attgtaaattctttggtcgaaggttttgctttcaacacttgttgaaaattcattaaataaggtatcaatataagcttggacaagtacaaaatgaatgtta |
217 |
Q |
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| T |
2681092 |
attgtaaattctttggtcgaaggttttgctttcaacacttgttgaaaattcattaaataaggtatcaatataagcttggacaagtacaaaatgaatgtta |
2681191 |
T |
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| Q |
218 |
accgtgtcaaaattaaactctataaaatcgaatttgcaactgccaccaaaccctttacagaaacattttatcatgtttctggactatacaaatatgttgg |
317 |
Q |
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| T |
2681192 |
accgtgtcaaaattaaactctataaaatcgaatttgcaactgccaccaaaccctttacagaaacattttatcatgtttctggactatacaaatatgttgg |
2681291 |
T |
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| Q |
318 |
atgatgttatgcttatttccctacctagcatctagcaatgtgactgtaacttggttcacactccatgtttcatcttgcttacttgaagaggaatcagtct |
417 |
Q |
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| T |
2681292 |
atgatgttatgcttatttccctacctagcatctagcaatgtgactgtaacttggttcacactccatgtttcatcttgcttacttgaagaggaatcagtct |
2681391 |
T |
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| Q |
418 |
cttgaggattccttgaccttccaagcgaaaatcctggacttctaggttctggcattagtgcagtttcactgcctagcatcaagagcactgaaggcattgt |
517 |
Q |
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| T |
2681392 |
cttgaggattccttgaccttccaagcgaaaatcctggacttctaggttctggcattagtgcagtttcactgcctagcatcaagagcactgaaggcattgt |
2681491 |
T |
|
| Q |
518 |
tggtctatcttctgcacgttcttggacacataagagtccaacatgtatgcatctaagaacttcagattctgtatatgaatttccaatcgatgaatcaatg |
617 |
Q |
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| T |
2681492 |
tggcctatcttctgcacgttcttggacacataatagtccaacatgtatgcatctaagaacttcagattctgtatatgaatttccaatcgatgaatcaatg |
2681591 |
T |
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| Q |
618 |
agttccaatgcattgccttctctccactgtccccatgcctacaacaagaaaacatattatttcttcaattcttggtgcttactacatagtagaagataat |
717 |
Q |
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| T |
2681592 |
agttccaatgcattgccttctctccactgtccccatgcctacaacaagaaaacatattatttcttcaattcttggtgcttactacatagtagaagataat |
2681691 |
T |
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| Q |
718 |
atcatatcacatcatagtagtttaattgaagaattattttcacttacattcct |
770 |
Q |
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| T |
2681692 |
atcatatcacatcatagtagtttaattgaagaattattttcacttacattcct |
2681744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 147 - 491
Target Start/End: Complemental strand, 3050404 - 3050071
Alignment:
| Q |
147 |
tttcaacacttgttgaaaattcattaaataaggtatcaatataagcttggacaagtacaaaatgaatgttaaccgtgtcaaaattaaactctataaaatc |
246 |
Q |
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| T |
3050404 |
tttcaacacttgttaaaaattcattaaataaggtatcaatataagattggatctgtacaaaatgaatgttaaccgtctcaaaatt--------------- |
3050320 |
T |
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| Q |
247 |
gaatttgcaactgccaccaaaccctttacagaaacattttatcatgtttctgg-actatacaaatatgttggatgatgttatgcttatttccctacctag |
345 |
Q |
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| T |
3050319 |
-----tgcaactgccaccaaaccctttacagaaacatttttccatgtttctgggactatacaaatatgttggatgatgttacgcttctttccctacctat |
3050225 |
T |
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| Q |
346 |
catctagcaatgtgactgtaacttggttcacactccatgtttcatc-ttgcttacttgaagaggaatcagtct-------cttgaggattccttgacctt |
437 |
Q |
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| T |
3050224 |
aatctagcaatgtgactgtgacttggttcacactccatccttcatctttgctttcttaaagaggaatcagtctcctaaggcctaaggatcctttgacctt |
3050125 |
T |
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| Q |
438 |
ccaagcgaaaatcctggacttctaggttctggcattagtgcagtttcactgcct |
491 |
Q |
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| T |
3050124 |
ccaagggaaaaccctggacttctaagttctggcattagtgcagtttcactgcct |
3050071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 494 - 637
Target Start/End: Complemental strand, 36367080 - 36366937
Alignment:
| Q |
494 |
catcaagagcactgaaggcattgttggtctatcttctgcacgttcttggacacataagagtccaacatgtatgcatctaagaacttcagattctgtatat |
593 |
Q |
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| T |
36367080 |
catcaacaccactgaagacattgttggcctatcttctgctcgctcttgtacgcataatagcccaacttgtatgcatctaaaaacctcagctggtgaatat |
36366981 |
T |
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| Q |
594 |
gaatttccaatcgatgaatcaatgagttccaatgcattgccttc |
637 |
Q |
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| T |
36366980 |
gaattaacaatagaagagtcaatcagctccaaagcatttccttc |
36366937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 36367222 - 36367153
Alignment:
| Q |
346 |
catctagcaatgtgactgtaacttggttcacactccatgtttcatcttgcttacttgaagaggaatcagt |
415 |
Q |
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| T |
36367222 |
catctaccattgtgacagtaacttggttcacagtgcaagattcatcttgtttacttgaggatgaatcagt |
36367153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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