View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_high_13 (Length: 274)
Name: NF18515_high_13
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 44494327 - 44494573
Alignment:
| Q |
18 |
ataagatttgtttttcatgaatgaagccgttaaggtttcttaaatcatataatgtatacattttaaaagagaaacatagttgtataatcattttaaaaca |
117 |
Q |
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| T |
44494327 |
ataagatttgtttttcatgaatgaagccgctaaggtttcttaaatcatataatgtatacattttaaaagagaaacatagttgtataatcattttaaaaca |
44494426 |
T |
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| Q |
118 |
actgtcgttcatatttattttgttctta--ctctctctattatttttgtccaaaaagaagacctattattaaagatataaagctcttatcaaagtgttgg |
215 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44494427 |
actgttgttcatatttattttgttcttactctctctctattatttttgtccaaaaagaagacctattattaaagatataaagctcttatcaaagtgttgg |
44494526 |
T |
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| Q |
216 |
ctcaaatctcatttgaaaggttttcgttttaaaatttatcaatgatg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44494527 |
ctcaaatctcatttgaaaggttttcgttttaaaatttatcaatgatg |
44494573 |
T |
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