View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_high_17 (Length: 236)
Name: NF18515_high_17
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 31 - 222
Target Start/End: Original strand, 30468531 - 30468722
Alignment:
| Q |
31 |
gacgttctaccccgtctgttccatgtcttttctactttaaccgtcttatttctcctctcatacttcgccgtcgtcgattccactgccactttctctccat |
130 |
Q |
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| T |
30468531 |
gacgttctaccccgtatgttccatgtcttttctactttaaccgtcatatttctcctctcatacttcgccgtcgtcgattccactgccactttctttccat |
30468630 |
T |
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| Q |
131 |
cgccacgggaataatgagattaagcgcgagagtgatcgacctaaacttattccctctctccaggtactcaatctgttaactttgatgttagt |
222 |
Q |
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| T |
30468631 |
cgccacgggaataatgagattaagcgcgagagtgatcgacctaaacttattccctctctccaggtactcaatctgttaactttgatgttagt |
30468722 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 37618744 - 37618674
Alignment:
| Q |
49 |
ttccatgtcttttctactttaaccgtcttatttctcctctcatacttcgccgtcgtcgattccactgccac |
119 |
Q |
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| T |
37618744 |
ttccatgtcttttctactttcaccgtcgtatttctcctctcatccctcgccgtcgtcgactcaactgccac |
37618674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 8541287 - 8541345
Alignment:
| Q |
49 |
ttccatgtcttttctactttaaccgtcttatttctcctctcatacttcgccgtcgtcga |
107 |
Q |
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| T |
8541287 |
ttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcga |
8541345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 23820622 - 23820680
Alignment:
| Q |
49 |
ttccatgtcttttctactttaaccgtcttatttctcctctcatacttcgccgtcgtcga |
107 |
Q |
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| T |
23820622 |
ttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcga |
23820680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 40172984 - 40172926
Alignment:
| Q |
49 |
ttccatgtcttttctactttaaccgtcttatttctcctctcatacttcgccgtcgtcga |
107 |
Q |
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| T |
40172984 |
ttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcga |
40172926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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