View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18515_high_18 (Length: 227)

Name: NF18515_high_18
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18515_high_18
NF18515_high_18
[»] chr4 (6 HSPs)
chr4 (154-212)||(23423762-23423820)
chr4 (154-210)||(23875133-23875189)
chr4 (8-76)||(23423898-23423962)
chr4 (162-212)||(26827693-26827743)
chr4 (20-56)||(23875013-23875049)
chr4 (154-210)||(24297924-24297980)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 23423820 - 23423762
Alignment:
Q  154 tcagtttgaaatggaggcaagcaccaagacaacaaagaagggagccggaggaaggaagg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23423820 tcagtttgaaatggaggcaagcaccaagacaacaaagaagggagcaggaggaaggaagg 23423762  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 23875133 - 23875189
Alignment:
Q  154 tcagtttgaaatggaggcaagcaccaagacaacaaagaagggagccggaggaaggaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23875133 tcagtttgaaatggaggcaagcaccaagacaacaaagaagggagccggtggaaggaa 23875189  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 23423962 - 23423898
Alignment:
Q  8 ggacatcatcagccaatagaaacacgaaaactctttcctatataaatcaatcacattgcaacactctga 76  Q
    |||| |||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  23423962 ggacctcattagccaatagaaacacgaaaactctttcctatataa----atcacattgcaacactctga 23423898  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 26827693 - 26827743
Alignment:
Q  162 aaatggaggcaagcaccaagacaacaaagaagggagccggaggaaggaagg 212  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  26827693 aaatggacgcaagcaccaagacaacaaagaaaggagccggtggaaggaagg 26827743  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 23875013 - 23875049
Alignment:
Q  20 ccaatagaaacacgaaaactctttcctatataaatca 56  Q
    ||||||||||||||||||| |||||||||||||||||    
T  23875013 ccaatagaaacacgaaaaccctttcctatataaatca 23875049  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 24297924 - 24297980
Alignment:
Q  154 tcagtttgaaatggaggcaagcaccaagacaacaaagaagggagccggaggaaggaa 210  Q
    |||||| |||||||| |||||| | ||| |||| |||||||||||||| ||||||||    
T  24297924 tcagttcgaaatggacgcaagcccaaaggcaacgaagaagggagccggtggaaggaa 24297980  T

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