View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_high_8 (Length: 368)
Name: NF18515_high_8
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 350
Target Start/End: Complemental strand, 9473553 - 9473211
Alignment:
| Q |
5 |
aggagaaaatgaaggaagttgaatcgggatcagttgacgaactgaaaaatacttcgcatcaaggaaatggaggactgagaaaacgacgttttgtacctcg |
104 |
Q |
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| T |
9473553 |
aggagaaaatgaaggaagttgaatcaggatcaagt---gaactaaaaaacactacgtatcgaggaaatggaggactgagaaaacggcattttgtacctag |
9473457 |
T |
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| Q |
105 |
aatacacaaatgaaacatatgcctacgatgttgattgttatggccatgatggtttcagtaaaagattattagaagtttttcatacgtaaggttatccgcg |
204 |
Q |
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| T |
9473456 |
aatacgcaaatgaaacatatgcctatgaagttgattgttatggccatgatggttttagaaaaagattactagaagtttttcctacgtaaggatatccacg |
9473357 |
T |
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| Q |
205 |
aattttttcaaacataatcagcatggttggcagctccagaggaaccgaagattgtcgaaaatcctggtatgttgaggttcattcaacaaggcagaatcat |
304 |
Q |
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| T |
9473356 |
acttttttcaaacataatcagcatggttggcagctccaggggaaccgaagattgtcgaaaatcctggtatgttgaggttcattcaacaagccagaatcat |
9473257 |
T |
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| Q |
305 |
tgaacaatgttagttccttccaaaattctggttctcactttacctg |
350 |
Q |
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| T |
9473256 |
tgaacaatgttagttccttccaaaattctggttctcactttacctg |
9473211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 9492848 - 9492743
Alignment:
| Q |
226 |
catggttggcagctccagaggaaccgaagattgtcgaaaatcctggtatgttgaggttcattcaacaaggcagaatcattgaacaatgttagttccttcc |
325 |
Q |
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||||||||||||| |||| |||||||||| ||||| ||| | |||||||||||||||||| |||| | ||||||||| | || | ||||||| |||| |
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| T |
9492848 |
catggttggcagcaccaggggaaccgaaggttgtcaaaagttttggtatgttgaggttcatcaaacaggctagaatcatttatcagttttagttctttcc |
9492749 |
T |
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| Q |
326 |
aaaatt |
331 |
Q |
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| T |
9492748 |
aaaatt |
9492743 |
T |
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