View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_high_9 (Length: 339)
Name: NF18515_high_9
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 178 - 329
Target Start/End: Complemental strand, 33372316 - 33372165
Alignment:
| Q |
178 |
gtaaccaaagccctcctccactatgcctcctcctcaaacaccaccaccaaatccatgtcctttgaagaaatcaacgctataacaaccactcttcacctta |
277 |
Q |
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| T |
33372316 |
gtaaccaaagccctcctccactatgcctcctccttaaacaccaccaccaaatccatgtcctttgaagaaatcaacgctataacaaccactcttcacctta |
33372217 |
T |
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| Q |
278 |
caccacaccccaacttcctcatctttggtctcacccatgagtcacttctctg |
329 |
Q |
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| T |
33372216 |
caccacaccccaacttcctcatctttggtctcacccatgagtcacttctctg |
33372165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 179 - 329
Target Start/End: Complemental strand, 33368114 - 33367964
Alignment:
| Q |
179 |
taaccaaagccctcctccactatgcctcctcctcaaacaccaccaccaaatccatgtcctttgaagaaatcaacgctataacaaccactcttcaccttac |
278 |
Q |
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|||| ||||| ||| | ||||| ||||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
33368114 |
taactaaagctctcgttcactacgcctcctcctcgaactccaccaccaaatccatgtccttttcagaaatcaacgccataacaaccactcttcaccttac |
33368015 |
T |
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| Q |
279 |
accacaccccaacttcctcatctttggtctcacccatgagtcacttctctg |
329 |
Q |
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| T |
33368014 |
accaaaccccaacttccttatctttggtctcacccaagagtcccttctctg |
33367964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 33372479 - 33372397
Alignment:
| Q |
15 |
tcacaaacaagctccaacaacaccctttcactctcaccgtctttggcttttcttcttccttctaacattcttcactatagtct |
97 |
Q |
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| T |
33372479 |
tcacaaacaagctccaacaacaccctttcactctcaccgtctttggcttttcttcttccttctaacattcttcactatagtct |
33372397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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