View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_low_11 (Length: 303)
Name: NF18515_low_11
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 7963259 - 7963554
Alignment:
| Q |
1 |
attgaaagataaataagataattataagagagaggagaggatgaggttg------ggacgtgattagttttgcttgtccttgaccagacaacacatttcc |
94 |
Q |
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| T |
7963259 |
attgaaagataaataaaataattataagagagaggagaggatgaggttgaggttgggacgtgattagttttgcttgtccttgatcagacaacacatttcc |
7963358 |
T |
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| Q |
95 |
tataaggcataatgaagaagaaggtagctttctattccnnnnnnnnnnnnnnnnngaatgtatgtatctaagcttttagcatagttgaatagaattacac |
194 |
Q |
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| T |
7963359 |
tataaggcataatgaagaagaaggtagctttctattcctttttttgtttctttttgaatgtatgtatctaagcttttagcatagttgaatagaattacac |
7963458 |
T |
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| Q |
195 |
aagatgataattgcgaacacatgctccggcacatggagattcattgttttattactttcccaagcacttggatttttggagaattcatcatatacc |
290 |
Q |
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| T |
7963459 |
aagatgataattgcgaacacatgctccggcacatggagattcattgttttattactttcccaagcacttggatttttgaagaattcatcatatacc |
7963554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 8005679 - 8005777
Alignment:
| Q |
38 |
aggatgaggttgggacgtgattagttttgcttgtccttg----accagacaacacatttcctataaggcataatgaagaagaaggtagctttctattcc |
132 |
Q |
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| T |
8005679 |
aggatgaggttgggacgtgattagttttgcttgtccttgcttgaccaaacaacacatttcctataaggcataatgaagaagaaggtagctttctattcc |
8005777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 8005796 - 8005834
Alignment:
| Q |
150 |
gaatgtatgtatctaagcttttagcatagttgaatagaa |
188 |
Q |
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| T |
8005796 |
gaatgtatgtatctaagcttttagcatagttgaatagaa |
8005834 |
T |
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