View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_low_12 (Length: 302)
Name: NF18515_low_12
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 54987262 - 54987536
Alignment:
| Q |
15 |
aatataatattgatgtatatccaacagaaataggataagagtgtttatatggccctaccattttataagctgcataacatcannnnnnnnnnnntgttat |
114 |
Q |
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| T |
54987262 |
aatataatattgatgtatatccaacagaaataggataagagtgtttatatggccctaccattttataagctgcataacatcaatatatatatattgttat |
54987361 |
T |
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| Q |
115 |
tataattgtaaaatcaatgattgattcaagttgatacgtatggaatagctaaacagattaactaaaaaccaaatattgattcttatacattaattgatta |
214 |
Q |
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| T |
54987362 |
tataat-gtaaaatcaatgattgatttaagttgatacgtatggaatagctaaacagattaactaaaaacaaaatattgattcttatacattaattgatta |
54987460 |
T |
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| Q |
215 |
tgattgaaaagaatgtttttagctatgagtttcttaactactctccgaaaaagtttgatgaacgaacagcaagtat |
290 |
Q |
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| T |
54987461 |
tgattgaaaagaatgtttttagctatgagtttcttaactactctccgaaaaagtttgatgaatgaacagcaagtat |
54987536 |
T |
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Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 109 - 269
Target Start/End: Original strand, 84558 - 84717
Alignment:
| Q |
109 |
tgttattataattgtaaaatcaatgattgattcaagttgatacgtatggaatagctaaacagattaactaaaaaccaaatattgattcttatacattaat |
208 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
84558 |
tgttattataat-gtaaaatcaatgattgatttaagttgatacgtatggaatagctaaacagattaactacaaagcaaatattgattcttatacattaat |
84656 |
T |
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| Q |
209 |
tgattatgattgaaaagaatgtttttagctatgagtttcttaactactctccgaaaaagtt |
269 |
Q |
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| T |
84657 |
tgattatgattgaaaagaatgtttttagctatgagtttcttaacaactctccaaacaagtt |
84717 |
T |
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