View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_low_14 (Length: 286)
Name: NF18515_low_14
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 6037973 - 6038234
Alignment:
| Q |
16 |
cacattccttgtatcccaattcacccacaaaactgaatgcaagattaatgacaaacccatttgaaccatgcctgatgggttgaagtcacaaaacattgaa |
115 |
Q |
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| T |
6037973 |
cacattccttgtatcccaattcacccacaaaactgaatgcaagattaatgacaaacccatttgaaccatgcctgatgggttgaagtcacaaaacattgaa |
6038072 |
T |
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| Q |
116 |
aagagttgagaaagattatggggaataaccaacacaagtcctaactagtggaagaaaggagaaatcacaacatgcaaacagatgaagaccagattcacta |
215 |
Q |
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| T |
6038073 |
aagagttgagaaagattatggggaataaccaacgcaagtcctaactagtggaagaaaagagaaatcacaacatgcaaacagatgaagaccagattcacta |
6038172 |
T |
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| Q |
216 |
tgatccccacacaaaaggcaagcagtacccaatacatgtaaaatcactctcctatgaaacaa |
277 |
Q |
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| T |
6038173 |
tgatccccacacaaaaggcaagcagtacccaatacatataaaatcactctcctatgaaacaa |
6038234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 6037859 - 6037901
Alignment:
| Q |
37 |
cacccacaaaactgaatgcaagattaatgacaaacccatttga |
79 |
Q |
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| T |
6037859 |
cacccacaaaactgaatgcaagattaatgacaaagccacttga |
6037901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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