View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18515_low_16 (Length: 258)

Name: NF18515_low_16
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18515_low_16
NF18515_low_16
[»] chr1 (6 HSPs)
chr1 (16-258)||(3972748-3972988)
chr1 (226-258)||(19431418-19431450)
chr1 (226-258)||(27032327-27032359)
chr1 (226-258)||(27907734-27907766)
chr1 (226-258)||(48843407-48843439)
chr1 (226-258)||(51748583-51748615)
[»] chr8 (2 HSPs)
chr8 (215-258)||(20896215-20896258)
chr8 (226-258)||(33938620-33938652)
[»] chr7 (7 HSPs)
chr7 (215-258)||(41851270-41851313)
chr7 (226-258)||(16876744-16876776)
chr7 (226-258)||(18867955-18867987)
chr7 (226-258)||(23185930-23185962)
chr7 (226-258)||(34328136-34328168)
chr7 (226-258)||(42971671-42971703)
chr7 (226-258)||(46425345-46425377)
[»] chr4 (3 HSPs)
chr4 (215-258)||(30643620-30643663)
chr4 (226-258)||(31455922-31455954)
chr4 (226-258)||(46079368-46079400)
[»] chr3 (6 HSPs)
chr3 (225-258)||(39485498-39485531)
chr3 (226-258)||(4037172-4037204)
chr3 (226-258)||(10688639-10688671)
chr3 (226-258)||(11233537-11233569)
chr3 (226-258)||(39994222-39994254)
chr3 (226-258)||(49279520-49279552)
[»] chr6 (5 HSPs)
chr6 (226-258)||(6139349-6139381)
chr6 (226-258)||(7506663-7506695)
chr6 (226-258)||(9549397-9549429)
chr6 (226-258)||(9928292-9928324)
chr6 (226-258)||(22469730-22469762)
[»] chr5 (2 HSPs)
chr5 (226-258)||(18623614-18623646)
chr5 (226-258)||(19824615-19824647)
[»] chr2 (7 HSPs)
chr2 (226-258)||(3496806-3496838)
chr2 (226-258)||(11226177-11226209)
chr2 (226-258)||(15141911-15141943)
chr2 (226-258)||(19037074-19037106)
chr2 (226-258)||(32832621-32832653)
chr2 (226-258)||(39729017-39729049)
chr2 (226-258)||(41069701-41069733)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 3972748 - 3972988
Alignment:
Q  16 atgatcaaacacgcattgattgtatttaataaaaaagaaagtatttaagagaatgtcgaaggaagnnnnnnnnngcattcatatcattcttccttcacct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||||    
T  3972748 atgatcaaacacgcattgattgtatttaataaaaaagaaagtatttaagagaatgtcgaaggaagaaaaaaa--gtattcatatcattcttccttcacct 3972845  T
Q  116 ataatatattgagtgcatctctttaaataaatgtttatttgtagatttcacttagatgtcattggttttttgtgcctttgtttcatatctttaacataat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3972846 ataatatattgagtgcatctctttaaataaatgtttatttgtagattttacttagatgtcattggttttttgtgcctttgtttcatatctctaacataat 3972945  T
Q  216 aatcagtcactctctctaatctaaataatttattttaatcatt 258  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  3972946 aatcagtcagtctctctaatctaaataatttattttaatcatt 3972988  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 19431450 - 19431418
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  19431450 tctctctcatctaaataatttattttaatcatt 19431418  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 27032359 - 27032327
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  27032359 tctctctcatctaaataatttattttaatcatt 27032327  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 27907734 - 27907766
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  27907734 tctctctcatctaaataatttattttaatcatt 27907766  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 48843407 - 48843439
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  48843407 tctctctcatctaaataatttattttaatcatt 48843439  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 51748583 - 51748615
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  51748583 tctctctcatctaaataatttattttaatcatt 51748615  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 20896258 - 20896215
Alignment:
Q  215 taatcagtcactctctctaatctaaataatttattttaatcatt 258  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||    
T  20896258 taatcaatcattctctctcatctaaataatttattttaatcatt 20896215  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 33938652 - 33938620
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  33938652 tctctctcatctaaataatttattttaatcatt 33938620  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 41851313 - 41851270
Alignment:
Q  215 taatcagtcactctctctaatctaaataatttattttaatcatt 258  Q
    |||||| ||| |||||||||| ||||||||||||||||||||||    
T  41851313 taatcaatcattctctctaatgtaaataatttattttaatcatt 41851270  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 16876776 - 16876744
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  16876776 tctctctcatctaaataatttattttaatcatt 16876744  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 18867987 - 18867955
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  18867987 tctctctcatctaaataatttattttaatcatt 18867955  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 23185962 - 23185930
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  23185962 tctctctcatctaaataatttattttaatcatt 23185930  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 34328136 - 34328168
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  34328136 tctctctcatctaaataatttattttaatcatt 34328168  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 42971703 - 42971671
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  42971703 tctctctcatctaaataatttattttaatcatt 42971671  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 46425377 - 46425345
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  46425377 tctctctcatctaaataatttattttaatcatt 46425345  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 30643663 - 30643620
Alignment:
Q  215 taatcagtcactctctctaatctaaataatttattttaatcatt 258  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||    
T  30643663 taatcaatcattctctctcatctaaataatttattttaatcatt 30643620  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 31455954 - 31455922
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  31455954 tctctctcatctaaataatttattttaatcatt 31455922  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 46079400 - 46079368
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  46079400 tctctctcatctaaataatttattttaatcatt 46079368  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 39485531 - 39485498
Alignment:
Q  225 ctctctctaatctaaataatttattttaatcatt 258  Q
    |||||||| |||||||||||||||||||||||||    
T  39485531 ctctctctcatctaaataatttattttaatcatt 39485498  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 4037172 - 4037204
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  4037172 tctctctcatctaaataatttattttaatcatt 4037204  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 10688639 - 10688671
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  10688639 tctctctcatctaaataatttattttaatcatt 10688671  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 11233537 - 11233569
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  11233537 tctctctcatctaaataatttattttaatcatt 11233569  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 39994222 - 39994254
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  39994222 tctctctcatctaaataatttattttaatcatt 39994254  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 49279520 - 49279552
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  49279520 tctctctcatctaaataatttattttaatcatt 49279552  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 6139349 - 6139381
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  6139349 tctctctcatctaaataatttattttaatcatt 6139381  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 7506663 - 7506695
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  7506663 tctctctcatctaaataatttattttaatcatt 7506695  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 9549397 - 9549429
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    |||||||||| ||||||||||||||||||||||    
T  9549397 tctctctaatttaaataatttattttaatcatt 9549429  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 9928292 - 9928324
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  9928292 tctctctcatctaaataatttattttaatcatt 9928324  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 22469730 - 22469762
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  22469730 tctctctcatctaaataatttattttaatcatt 22469762  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 18623646 - 18623614
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  18623646 tctctcttatctaaataatttattttaatcatt 18623614  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 19824615 - 19824647
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  19824615 tctctctcatctaaataatttattttaatcatt 19824647  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 3496838 - 3496806
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  3496838 tctctctcatctaaataatttattttaatcatt 3496806  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 11226177 - 11226209
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  11226177 tctctctcatctaaataatttattttaatcatt 11226209  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 15141911 - 15141943
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  15141911 tctctctcatctaaataatttattttaatcatt 15141943  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 19037106 - 19037074
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  19037106 tctctctcatctaaataatttattttaatcatt 19037074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 32832653 - 32832621
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  32832653 tctctctcatctaaataatttattttaatcatt 32832621  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 39729017 - 39729049
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  39729017 tctctctcatctaaataatttattttaatcatt 39729049  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 41069733 - 41069701
Alignment:
Q  226 tctctctaatctaaataatttattttaatcatt 258  Q
    ||||||| |||||||||||||||||||||||||    
T  41069733 tctctctcatctaaataatttattttaatcatt 41069701  T

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