View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_low_18 (Length: 254)
Name: NF18515_low_18
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 49804792 - 49804570
Alignment:
| Q |
15 |
aatagagccaaataagaatttttaattagtagagaaagaaaggagtgaaattttattataatttaaaaataatggtgtgatgaattattagttatatgaa |
114 |
Q |
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| T |
49804792 |
aatagagccaaataagaatttttaattagtagagaaagaaaggagtgaaattttattataatttaaaaataatggtgtgatgaattattcgttatatgaa |
49804693 |
T |
|
| Q |
115 |
tcattcaattaatataattgtcaattgaattttccgaccaaaattgataaacttcacacaccgttgaccaaccactttggacgacggcgtcgaagaacca |
214 |
Q |
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| T |
49804692 |
tcattcaattaatataattgtcaattgaattttccgaccaaaattgataaacttcacacaccattgaccaaccactttggacgacggcgtcgaagaacca |
49804593 |
T |
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| Q |
215 |
aaattgaatcttggtgattttgt |
237 |
Q |
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| T |
49804592 |
aaattgaatcttggtgattttgt |
49804570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 2369701 - 2369780
Alignment:
| Q |
115 |
tcattcaattaatataattgtcaattgaattttccgaccaaaattgataaacttcacacaccgttgaccaaccactttgg |
194 |
Q |
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|||||| |||| |||||||||||||||||||| | ||||||||||||||||||| ||||||| |||||| ||||||||| |
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| T |
2369701 |
tcattcgattagtataattgtcaattgaatttccggaccaaaattgataaactttacacaccattgaccctccactttgg |
2369780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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