View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18515_low_2 (Length: 750)

Name: NF18515_low_2
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18515_low_2
NF18515_low_2
[»] chr4 (13 HSPs)
chr4 (9-728)||(12211225-12211969)
chr4 (9-178)||(31944616-31944792)
chr4 (9-178)||(53693033-53693209)
chr4 (9-178)||(4325412-4325587)
chr4 (10-179)||(55464660-55464836)
chr4 (9-131)||(3074423-3074545)
chr4 (55-179)||(27364882-27365013)
chr4 (9-99)||(1147585-1147675)
chr4 (9-77)||(25182878-25182946)
chr4 (9-121)||(8897925-8898037)
chr4 (85-183)||(42843702-42843807)
chr4 (9-121)||(10632643-10632757)
chr4 (21-61)||(48130099-48130139)
[»] chr7 (17 HSPs)
chr7 (10-179)||(27387306-27387482)
chr7 (9-170)||(9230409-9230577)
chr7 (9-179)||(26493713-26493890)
chr7 (10-179)||(19399977-19400153)
chr7 (10-179)||(38575289-38575465)
chr7 (9-179)||(45197643-45197819)
chr7 (9-178)||(23179885-23180060)
chr7 (30-178)||(8638614-8638770)
chr7 (12-114)||(14088819-14088921)
chr7 (12-114)||(14398837-14398939)
chr7 (12-114)||(25491636-25491738)
chr7 (84-178)||(43727996-43728097)
chr7 (9-67)||(10224009-10224067)
chr7 (13-61)||(26782317-26782365)
chr7 (132-178)||(23804627-23804673)
chr7 (179-217)||(34224482-34224520)
chr7 (9-77)||(25024631-25024699)
[»] chr8 (25 HSPs)
chr8 (215-369)||(34228485-34228645)
chr8 (9-178)||(13152393-13152569)
chr8 (9-179)||(30791457-30791634)
chr8 (9-172)||(9256395-9256565)
chr8 (9-176)||(14446834-14447008)
chr8 (9-178)||(16532631-16532806)
chr8 (10-179)||(21958511-21958687)
chr8 (9-177)||(27190772-27190947)
chr8 (9-178)||(24333714-24333893)
chr8 (9-121)||(32359486-32359598)
chr8 (14-121)||(32372022-32372129)
chr8 (9-121)||(32342880-32342992)
chr8 (9-121)||(32355367-32355479)
chr8 (9-114)||(40146009-40146114)
chr8 (9-129)||(10014434-10014554)
chr8 (9-178)||(28846621-28846781)
chr8 (13-119)||(34228232-34228338)
chr8 (382-458)||(34228883-34228960)
chr8 (557-608)||(34229009-34229060)
chr8 (9-76)||(42447034-42447101)
chr8 (88-156)||(10467786-10467861)
chr8 (9-60)||(24592336-24592387)
chr8 (9-60)||(10467876-10467927)
chr8 (20-61)||(3435409-3435450)
chr8 (21-70)||(40470481-40470529)
[»] scaffold0019 (1 HSPs)
scaffold0019 (9-183)||(134853-135034)
[»] chr1 (21 HSPs)
chr1 (9-178)||(52753819-52753992)
chr1 (9-178)||(9637121-9637297)
chr1 (17-178)||(25017386-25017554)
chr1 (12-179)||(26272931-26273105)
chr1 (9-178)||(14498898-14499073)
chr1 (398-608)||(26273123-26273338)
chr1 (9-178)||(40864718-40864894)
chr1 (9-178)||(48606611-48606787)
chr1 (9-112)||(17874851-17874954)
chr1 (19-178)||(32379865-32380027)
chr1 (9-153)||(35948977-35949128)
chr1 (9-178)||(30559004-30559180)
chr1 (85-179)||(17127438-17127539)
chr1 (42-183)||(21973820-21973968)
chr1 (10-61)||(11843899-11843950)
chr1 (9-131)||(30054875-30054997)
chr1 (6-60)||(170445-170500)
chr1 (608-661)||(26273573-26273626)
chr1 (21-61)||(33489827-33489867)
chr1 (21-61)||(41972262-41972302)
chr1 (28-77)||(28463203-28463252)
[»] chr5 (13 HSPs)
chr5 (12-178)||(3055482-3055655)
chr5 (9-183)||(203846-204026)
chr5 (9-178)||(23244569-23244745)
chr5 (9-178)||(8785782-8785958)
chr5 (41-179)||(1280377-1280522)
chr5 (9-178)||(11852715-11852891)
chr5 (9-157)||(22712898-22713045)
chr5 (414-609)||(1280143-1280341)
chr5 (9-131)||(27168802-27168924)
chr5 (9-129)||(2228971-2229091)
chr5 (9-153)||(22541911-22542062)
chr5 (29-179)||(26540674-26540831)
chr5 (39-121)||(19518971-19519053)
[»] chr3 (19 HSPs)
chr3 (10-179)||(31989028-31989204)
chr3 (220-363)||(33167580-33167729)
chr3 (19-178)||(51261979-51262145)
chr3 (10-179)||(24908393-24908569)
chr3 (10-179)||(53710397-53710573)
chr3 (12-179)||(43137126-43137299)
chr3 (12-179)||(37381871-37382045)
chr3 (9-175)||(3856875-3857048)
chr3 (9-118)||(24988812-24988921)
chr3 (270-359)||(43136509-43136598)
chr3 (47-178)||(15667973-15668111)
chr3 (465-608)||(37382557-37382693)
chr3 (9-121)||(22934798-22934910)
chr3 (465-604)||(43136281-43136413)
chr3 (10-67)||(51408609-51408666)
chr3 (29-77)||(38282515-38282563)
chr3 (9-74)||(9743379-9743444)
chr3 (407-452)||(43136438-43136484)
chr3 (15-61)||(43585933-43585979)
[»] chr2 (21 HSPs)
chr2 (9-178)||(12539574-12539749)
chr2 (12-179)||(19951833-19952007)
chr2 (9-174)||(35649659-35649831)
chr2 (382-608)||(19952012-19952244)
chr2 (12-179)||(33453190-33453364)
chr2 (19-178)||(34317482-34317642)
chr2 (9-179)||(22483548-22483725)
chr2 (9-179)||(22464669-22464847)
chr2 (9-179)||(34526351-34526529)
chr2 (31-99)||(31392486-31392554)
chr2 (9-121)||(18425956-18426072)
chr2 (9-67)||(13309707-13309765)
chr2 (85-130)||(13308771-13308816)
chr2 (9-130)||(34907640-34907758)
chr2 (13-58)||(7886661-7886706)
chr2 (9-54)||(31392927-31392972)
chr2 (176-217)||(35651564-35651605)
chr2 (9-61)||(26656340-26656392)
chr2 (458-593)||(33453812-33453940)
chr2 (9-63)||(1954951-1955005)
chr2 (21-77)||(45121340-45121396)
[»] chr6 (11 HSPs)
chr6 (10-178)||(12180525-12180700)
chr6 (9-174)||(11970964-11971135)
chr6 (9-131)||(3050917-3051041)
chr6 (9-171)||(25599159-25599331)
chr6 (9-179)||(24074411-24074588)
chr6 (9-178)||(25340445-25340620)
chr6 (10-131)||(1296563-1296684)
chr6 (33-131)||(30621227-30621324)
chr6 (9-114)||(32441973-32442078)
chr6 (175-217)||(22257696-22257738)
chr6 (175-210)||(24696100-24696135)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-179)||(259917-260094)
[»] scaffold0178 (1 HSPs)
scaffold0178 (9-178)||(17740-17916)
[»] scaffold0015 (1 HSPs)
scaffold0015 (10-179)||(214161-214337)
[»] scaffold0198 (1 HSPs)
scaffold0198 (9-131)||(1450-1572)
[»] scaffold0726 (1 HSPs)
scaffold0726 (9-118)||(950-1059)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-129)||(435350-435469)
[»] scaffold0168 (1 HSPs)
scaffold0168 (9-179)||(15813-15991)
[»] scaffold0012 (1 HSPs)
scaffold0012 (9-179)||(197104-197282)


Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 9 - 728
Target Start/End: Original strand, 12211225 - 12211969
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||    
T  12211225 gagatgaaatataacctaccaatagtgtgctaaataaaattaggaggtaaatgtcattttcgagacctcattgaaatgaatgttcgaataatatcaacat 12211324  T
Q  109 catcaaatgacttgaatatctcctgt-------aacatatcatcaagtcattgaactacacatcgttgatcttgttgcacaacattcatattctcaatac 201  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12211325 catcaaatgacttgaatatctcctgttcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttgcacaacattcatattctcaatac 12211424  T
Q  202 ttgttctatcaaccaattaagttcatcgggctctatcatgcttttagcttttaaacaaagggtagaaaatatctatttccttcctatatggttaacaaat 301  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||| | ||||||||||||||| |||||||||    
T  12211425 ttgttctatcaaccaattaagttcatcgggctctgtcatgcttttagctttttaacaaattgtagaaaatatttgtttccttcctatatgattaacaaat 12211524  T
Q  302 gtgattcaattactcatcagcattaattaatattttagcatttgatttgttgaacagtccatagat----tattagtttaacactttaattgacagtaaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||||| |||||||    
T  12211525 gtgattcaattactcatcagcattaattaatattttagcatttaatttgttgaacagtccatagattagatattagtttaacactttaattggcagtaaa 12211624  T
Q  398 agaagaaattgaaacggctcattaaatatagttggaaagaataggttcaggcttggtagt------------tcatatatattatgatgattcacaa-tt 484  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||            ||| | |||| |||||||||||||| ||    
T  12211625 agaagaaattgaaacggctcattaaatatagttggaaagaaaaggttcatgcttgatagttgatactagtaatcacacatataatgatgattcacaattt 12211724  T
Q  485 cacatgaaattccatataatataacaagttctattaacaattgaacacatgaaattccacctcacagagactatgtataaaataacaaaaagatgtgcaa 584  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  12211725 cacatgaaattccatataatataacaagttctattaacagttgaacacatgaaattccacctcacacagactatgtacaaaataacaaaaagatgtgcaa 12211824  T
Q  585 aatagaatgttatgtaaatgataaagaacatgtttatgctgtgcgcgtgtgagaaatttcatgatttgcccaatttta-nnnnnnnaagcgggttaatga 683  Q
    ||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| |||        ||||| ||||||||    
T  12211825 aatagaatgctatgtaaatgataaagaacgtgtttctgctctgcgcgtgtgagaaatttcatgattttcccaatattattttttttaagcgagttaatga 12211924  T
Q  684 gatattgggttgtgccatatataagaaagtatcaattgagcccaa 728  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  12211925 gatattgggttgtgccatatataagaaagtatcgattgagcccaa 12211969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 31944792 - 31944616
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| ||||||||||||  |||||||||||||||||||||||| |||| ||||||||| |||   ||||||||||||||| ||||||||    
T  31944792 gagatgaaacataacttgtcaatagtgtactaaataaaattaggaggtaaatgccctttccgagacctctttgcggtgaatgttcgaataatatcaacat 31944693  T
Q  109 catcaaatgacttgaatatctc-------ctgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| |||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31944692 catcaagtgacttgaatatctcacactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 31944616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 53693033 - 53693209
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| || |||||||||| ||||| |||||| ||||| ||||| |||| ||||||||| |||  |||||||||||||||| ||||||||    
T  53693033 gagatgaaacataacttgccaatagtgtgctaaatgaaattaagaggtgaatgccctttccgagacctctttgcgatgaatgttcgaataatatcaacat 53693132  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| || ||||| |||||||       |||||||||||||||||||||||||| ||||| |||||||| |||||    
T  53693133 catcaagtgccttgattatctcccgctcgatgtaacatatcatcaagtcattgaaccacacaccgttgatcatgttg 53693209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 4325587 - 4325412
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||| || ||||||||||||||||||| |||||||||||||||||||| ||| ||||  ||||| |  | |   ||||||||| ||||| ||||||||    
T  4325587 gagatgcaacataacctgtcaatagtgtgctaaataaaattaggaggtaattgccctttctgagacattct-gctgtgaatgttcaaataatatcaacat 4325489  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| ||  |||| |||||||       |||||||||||||||||||||||||| ||||||||||||||||||||    
T  4325488 catcaagtgggttgattatctcccactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 4325412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 55464660 - 55464836
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    ||||||||||||||||| ||||   ||| ||||||||||||||||||| ||||  ||||||   |||| ||  | ||||||||||||||| |||||||||    
T  55464660 agatgaaatataacctgccaattacgtgctaaataaaattaggaggtagatgcctttttcgtagcctctttcgagtgaatgttcgaataatatcaacatc 55464759  T
Q  110 atcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||| |||||||| | |||||       |||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  55464760 atcaagtgacttgattttctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgc 55464836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 3074545 - 3074423
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| || |||||||||| |||||||||||||||| ||||||| |||   |||||||| |||  |||||||||| ||||| ||||||||    
T  3074545 gagatgaaacataacttgccaatagtgtgctaaataaaattaggagataaatgcccttcctgagacctctttgcgatgaatgttcaaataatatcaacat 3074446  T
Q  109 catcaaatgacttgaatatctcc 131  Q
    |||||| |||||||| |||||||    
T  3074445 catcaagtgacttgattatctcc 3074423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 27365013 - 27364882
Alignment:
Q  55 gtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaatgacttgaatatctcc-------tgtaacatatcatcaa 147  Q
    |||||||| |||||||||||||| ||    ||||||||||||||| |||||||||||||| ||||||||||||||||       ||||||||||||||||    
T  27365013 gtaaatgcccttttcgagacctcttttcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaa 27364914  T
Q  148 gtcattgaactacacatcgttgatcttgttgc 179  Q
    |||||| ||| |||||  ||||||||||||||    
T  27364913 gtcatttaaccacacactgttgatcttgttgc 27364882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 1147675 - 1147585
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataa 99  Q
    ||||||||| ||||| ||||||||||||  |||| ||||||||||||||||| |||||| ||||||||| ||| |||||||||||||||||    
T  1147675 gagatgaaacataacttgtcaatagtgttttaaagaaaattaggaggtaaatactctttccgagacctctttgcaatgaatgttcgaataa 1147585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 25182878 - 25182946
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctc 77  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| |||||||| | ||||||||||||||    
T  25182878 gagatgaaatataacctatcaatagtgtgctaaataaaattagaaggtaaatacccttttcgagacctc 25182946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 8897925 - 8898037
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||||||| ||  ||||||| || ||||||||||||||||||||||  |||||  |||||||| |||   |||||| |||||||| ||||||||    
T  8897925 gagatgaaatataaactaccaatagtttgctaaataaaattaggaggtaaatagtctttctgagacctctttgcggtgaatgctcgaataatatcaacat 8898024  T
Q  109 catcaaatgactt 121  Q
    |||| | ||||||    
T  8898025 catccagtgactt 8898037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 42843807 - 42843702
Alignment:
Q  85 tgaatgttcgaataaaatcaacatcatcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgtt 177  Q
    ||||||||||| ||| |||||||||||||| |||||||||||||||        | |||||||||||||| ||||| ||| |||||| ||||||||||||    
T  42843807 tgaatgttcgattaatatcaacatcatcaagtgacttgaatatctctcactcaatataacatatcatcaactcattaaaccacacattgttgatcttgtt 42843708  T
Q  178 gcacaa 183  Q
    ||||||    
T  42843707 gcacaa 42843702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 10632643 - 10632757
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatg--aatgttcgaataaaatcaac 106  Q
    |||||||||||||| ||  ||||||||||  |||||||||||||||||||||| | ||| |||||| || |||   ||  ||||||||||||| || |||    
T  10632643 gagatgaaatataagctaccaatagtgtgcaaaataaaattaggaggtaaatgatatttccgagacttctttgcggtgaaaatgttcgaataacattaac 10632742  T
Q  107 atcatcaaatgactt 121  Q
    |||||||| ||||||    
T  10632743 atcatcaagtgactt 10632757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 48130139 - 48130099
Alignment:
Q  21 aacctgtcaatagtgtggtaaataaaattaggaggtaaatg 61  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  48130139 aacccgtcaatagtgtgctaaataaaattaggaggtaaatg 48130099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 27387306 - 27387482
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || |||||| ||  | ||||||||||||||| |||||||||    
T  27387306 agatgaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgctctttccgcgacctctttcgagtgaatgttcgaataatatcaacatc 27387405  T
Q  110 atcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||| ||||||||||||||||       |||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  27387406 atcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgc 27387482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 9230577 - 9230409
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||| | ||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||  |||||||||||||||| ||||||||    
T  9230577 gagatgaaacataccttgtcaatagtgtgctaaataaaattaggaggtaaatgcccttttcgatacctctttgcgatgaatgttcgaataatatcaacat 9230478  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttga 170  Q
    ||||||||||||||| |||||||       |||||||||||||||||||||||||| ||||||||||||    
T  9230477 catcaaatgacttgagtatctcccgctctatgtaacatatcatcaagtcattgaaccacacatcgttga 9230409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 26493713 - 26493890
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| ||||||||| ||    ||||||||||||||| ||||||||    
T  26493713 gagatgaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgccctttccgagacctctttacggtgaatgttcgaataatatcaacat 26493812  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    |||||| ||||||||||||||||       |||||| ||||||||||||||| ||| |||||| ||| ||||||||||    
T  26493813 catcaagtgacttgaatatctcccgctcggtgtaacgtatcatcaagtcatttaaccacacattgttcatcttgttgc 26493890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 19400153 - 19399977
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||| | |||| || |||||| ||  | ||||||||||||||| |||||||||    
T  19400153 agatgaaatataacctgccaatagcgtgctaaataaaattaggaggtaaataccctttccgcgacctctttcgagtgaatgttcgaataatatcaacatc 19400054  T
Q  110 atcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    |||||  |||||||||||||||       |||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  19400053 atcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgc 19399977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 38575289 - 38575465
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| || |||||| ||  | ||||||||||||||| |||||||||    
T  38575289 agatgaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgttctttccgcgacctctttcgagtgaatgttcgaataatatcaacatc 38575388  T
Q  110 atcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||| |||||| |||||||||       ||||||||||||||||||| || ||| || ||| |||||| |||||||    
T  38575389 atcaagtgactttaatatctcccgctcggtgtaacatatcatcaagtcgttcaaccacccattgttgatattgttgc 38575465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 45197819 - 45197643
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||||||||||  |||||| ||| ||||||||||||||| |||||||| ||   ||||||||| |||   |||||||||||| || ||||||||    
T  45197819 gagatgaaatataacctaccaatagggtgctaaataaaattaggatgtaaatgccctccccgagacctctttgtggtgaatgttcgaacaatatcaacat 45197720  T
Q  109 catcaaatgacttgaatatctcctg------taacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    | |||| ||||||||||||||||||       || |||||||||||||||||||| |||||| ||||||||||||||    
T  45197719 cgtcaagtgacttgaatatctcctgctcgatgaatatatcatcaagtcattgaaccacacattgttgatcttgttgc 45197643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 23179885 - 23180060
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| ||||||||||||| ||||| |||||||||| ||||||| |||| | ||||||| |||   ||||||||||||||| ||||||||    
T  23179885 gagatgaaacataacttgtcaatagtgtgctaaattaaattaggag-taaatgccctttccaagacctctttgcggtgaatgttcgaataatatcaacat 23179983  T
Q  109 catcaaatgacttgaatatctc-------ctgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
     ||||| || ||||||||||||        |||||||||||||||||| ||||||  ||||||||||||||||||||    
T  23179984 tatcaagtgccttgaatatctctcgctcggtgtaacatatcatcaagttattgaaacacacatcgttgatcttgttg 23180060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 8638770 - 8638614
Alignment:
Q  30 atagtgtggtaaataaaattaggaggtaaatgctcttttcgagacc-tcattgaaatgaatgttcgaataaaatcaacatcatcaaatgacttgaatatc 128  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||| || |||   ||||||||||||||| ||| | ||||||||||||||||||||||    
T  8638770 atagtgtgctaaataaaattaggaggtaaatgccctttccgagaccctctttgcgttgaatgttcgaataatatcgatatcatcaaatgacttgaatatc 8638671  T
Q  129 tcctg-------taacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    || ||       |||||||||||||||| ||| ||| |||| |||||||||||||||    
T  8638670 tcttgttcggtataacatatcatcaagtaattaaaccacacgtcgttgatcttgttg 8638614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 14088921 - 14088819
Alignment:
Q  12 atgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcat 111  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||| ||||||||| |||  ||| ||||| |||||| |||| ||||||    
T  14088921 atgaaatataacttgtcaatagtgtgctaaataaaattaggaggtaaatgccttttccgagacctctttgcgatggatgtttgaataatatcagcatcat 14088822  T
Q  112 caa 114  Q
    |||    
T  14088821 caa 14088819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 14398939 - 14398837
Alignment:
Q  12 atgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcat 111  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||| ||||||||| |||  ||| ||||| |||||| |||| ||||||    
T  14398939 atgaaatataacttgtcaatagtgtgctaaataaaattaggaggtaaatgccttttccgagacctctttgcgatggatgtttgaataatatcagcatcat 14398840  T
Q  112 caa 114  Q
    |||    
T  14398839 caa 14398837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 25491636 - 25491738
Alignment:
Q  12 atgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcat 111  Q
    |||||||||||| ||||||||||||| |||||||||| |||| ||||||||  |||| |||||||| ||  | ||||||||||||||| |||||||||||    
T  25491636 atgaaatataacatgtcaatagtgtgataaataaaatcaggaagtaaatgccttttttgagacctctttacagtgaatgttcgaataatatcaacatcat 25491735  T
Q  112 caa 114  Q
    |||    
T  25491736 caa 25491738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 43728097 - 43727996
Alignment:
Q  84 atgaatgttcgaataaaatcaacatcatcaaatgacttgaatatctcctgt-------aacatatcatcaagtcattgaactacacatcgttgatcttgt 176  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||| ||       ||||||||||||||||||||||| |||||||||||||| |||    
T  43728097 atgaatgtttgaataatatcaacatcatcaactgacttgaatatctcccgttcgatataacatatcatcaagtcattgaaccacacatcgttgatcatgt 43727998  T
Q  177 tg 178  Q
    ||    
T  43727997 tg 43727996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 10224067 - 10224009
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttt 67  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||    
T  10224067 gagatgaaatataatctgccgatagtgtggtaaataaaattaggaggtaaatggtcttt 10224009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 26782317 - 26782365
Alignment:
Q  13 tgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatg 61  Q
    ||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  26782317 tgaaacataacttgtcaatagtgtgctaaataaaattaggaggtaaatg 26782365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 23804627 - 23804673
Alignment:
Q  132 tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  23804627 tgtaatatatcaacaagtcattgaaccacacatcgttgatcttgttg 23804673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 34224482 - 34224520
Alignment:
Q  179 cacaacattcatattctcaatacttgttctatcaaccaa 217  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  34224482 cacaacattcatattctcaatacttgttttatcaaccaa 34224520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 25024699 - 25024631
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctc 77  Q
    ||||||||||||||| ||||||||   || | |||||||||||||||||||||| ||||  ||||||||    
T  25024699 gagatgaaatataacatgtcaataacatgcttaataaaattaggaggtaaatgccctttctgagacctc 25024631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 7e-48; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 215 - 369
Target Start/End: Original strand, 34228485 - 34228645
Alignment:
Q  215 caattaagttcatcgggctctatcatgcttttagcttttaaacaaagggtagaaa------atatctatttccttcctatatggttaacaaatgtgattc 308  Q
    |||||||||||||| || | | |||||||||||||||||||||||||||||||||      |||||||||||||||||||| | ||||||||||||||||    
T  34228485 caattaagttcatcaggttttgtcatgcttttagcttttaaacaaagggtagaaattcatcatatctatttccttcctataggattaacaaatgtgattc 34228584  T
Q  309 aattactcatcagcattaattaatattttagcatttgatttgttgaacagtccatagatta 369  Q
    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  34228585 aattactcatcaacattaattaatattttagcatttagtttgctgaacagtccatagatta 34228645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 13152393 - 13152569
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||  ||||||||| |||||| | ||||||    
T  13152393 gagatgaaacataacttgtcaatagtgtgctaaataaaattaggaggtaaatgccctttccgagacctctttgcgatgaatgttggaataataccaacat 13152492  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||| ||||| |||||||| |||||    
T  13152493 catcaaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacagcgttgatcatgttg 13152569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 30791457 - 30791634
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| |||| ||||||||| |||   ||||||||||||||| |||||  |    
T  30791457 gagatgaaatataacctgtcaatagcgtgctaaataaaattaggtggtaaatgccctttccgagacctctttgcggtgaatgttcgaataatatcaatgt 30791556  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    |||||| ||||||||||||||||       |||||||||||||||||||||||||| || |||  |||||||||||||    
T  30791557 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccactcattcttgatcttgttgc 30791634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 9256565 - 9256395
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||   ||| ||||||||| |||  |||||||||||||| | ||||||||    
T  9256565 gagatgaaacataacttgtcaatagtgtgctaaataaaattaggaggtaaatgtcatttgcgagacctctttgcgatgaatgttcgaattatatcaacat 9256466  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatc 172  Q
    |||||| ||||||||||||||||       |||||||||||||||||||||| ||| ||||||| ||||||    
T  9256465 catcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattaaaccacacatcattgatc 9256395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 14447008 - 14446834
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||| |||||  ||||||||||| |||||||||||||||||| ||||  |||| ||||||||| ||| | |||||||| |||||| ||||||||    
T  14447008 gagatgaaatgtaaccgatcaatagtgtgctaaataaaattaggaggtgaatgtcctttccgagacctctttgcagtgaatgttagaataatatcaacat 14446909  T
Q  109 catcaaatgacttgaatatctc-------ctgtaacatatcatcaagtcattgaactacacatcgttgatcttgt 176  Q
    |||||| |||||||||||||||        |||||||||||||||||||||||||| ||| ||||||||||||||    
T  14446908 catcaagtgacttgaatatctctctcttggtgtaacatatcatcaagtcattgaaccacaaatcgttgatcttgt 14446834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 16532631 - 16532806
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||||||||| | |||||| ||| |||||||||||||||||||||||| |||| ||| | ||| |||   |||||||| |||||| ||||||||    
T  16532631 gagatgaaatataaccag-caatagcgtgctaaataaaattaggaggtaaatgccctttccgatatctctttgcggtgaatgtttgaataatatcaacat 16532729  T
Q  109 catcaaatgacttgaatatctc-------ctgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| |||||||||||||||        | |||||||||||||||||||||||| ||||||||||||||||||||    
T  16532730 catcaagtgacttgaatatctctcacttggtataacatatcatcaagtcattgaaccacacatcgttgatcttgttg 16532806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 21958687 - 21958511
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||| | |||| || |||||| ||  | | ||||||||||||| |||||||||    
T  21958687 agatgaaatataacctgccaatagcgtgctaaataaaattaggaggtaaattccctttccgcgacctcttttgagttaatgttcgaataatatcaacatc 21958588  T
Q  110 atcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||| ||||| ||||||||||       |||||||||||||||||||||| ||| ||| || ||||||||||||||    
T  21958587 atcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttgc 21958511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 27190947 - 27190772
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| || |||||||||  |||||||||||||||||||||||  ||||  ||||| || |||   ||||| ||||| ||| ||||||||    
T  27190947 gagatgaaacataacttgccaatagtgtactaaataaaattaggaggtaaatgtcctttctgagacatctttgcggtgaatattcgagtaatatcaacat 27190848  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgtt 177  Q
    |||||| ||||||||||||||||       || ||||||||||||||||||||||| |||||||||||||||||||    
T  27190847 catcaagtgacttgaatatctcccgctaggtgcaacatatcatcaagtcattgaaccacacatcgttgatcttgtt 27190772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 24333893 - 24333714
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatg---aatgttcgaataaaatcaa 105  Q
    ||||||||| |||||| |||||||||||| |||||||||| | ||||||||| |||||| ||||||||| |||   ||   ||||||||||||| || ||    
T  24333893 gagatgaaacataaccggtcaatagtgtgctaaataaaatcatgaggtaaattctctttccgagacctctttgtggtgaataatgttcgaataatattaa 24333794  T
Q  106 catcatcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    ||||||||| ||||||||||||||||       ||||||||||||| |||||||||||  | ||||||||||||||||||    
T  24333793 catcatcaagtgacttgaatatctcccgctcagtgtaacatatcataaagtcattgaatcatacatcgttgatcttgttg 24333714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 32359598 - 32359486
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||||||| ||  |||||||||| |||||||||||||||||||||||   |||| |||||||| ||| | ||||||||||||||| ||||||||    
T  32359598 gagatgaaatataatctaccaatagtgtgctaaataaaattaggaggtaaatgacatttttgagacctctttgcagtgaatgttcgaataatatcaacat 32359499  T
Q  109 catcaaatgactt 121  Q
    |||||| ||||||    
T  32359498 catcaagtgactt 32359486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 32372129 - 32372022
Alignment:
Q  14 gaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatca 113  Q
    ||||||||||||  |||||||||| |||||||||||||||||||||||  ||||| |||||||| |||   ||||||||||||||| |||||||||||||    
T  32372129 gaaatataacctaccaatagtgtgctaaataaaattaggaggtaaatgacctttttgagacctctttgcggtgaatgttcgaataatatcaacatcatca 32372030  T
Q  114 aatgactt 121  Q
    | ||||||    
T  32372029 agtgactt 32372022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 32342992 - 32342880
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||||||||| |  |||| ||||| |||||||||||||||||||||||  ||||| |||||||  ||| | ||||||||||||||| ||||||||    
T  32342992 gagatgaaatataacataccaatggtgtgctaaataaaattaggaggtaaatgacctttttgagacctttttgcagtgaatgttcgaataatatcaacat 32342893  T
Q  109 catcaaatgactt 121  Q
    |||||| ||||||    
T  32342892 catcaagtgactt 32342880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 32355479 - 32355367
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||||||||| |  |||| ||||| |||||||||||||||||||||||  ||||| |||||||  ||| | ||||||||||||||| ||||||||    
T  32355479 gagatgaaatataacataccaatggtgtgctaaataaaattaggaggtaaatgacctttttgagacctttttgcagtgaatgttcgaataatatcaacat 32355380  T
Q  109 catcaaatgactt 121  Q
    |||||| ||||||    
T  32355379 catcaagtgactt 32355367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 40146009 - 40146114
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| |||| ||| |||||||||| ||||||||||||||||||| ||||  ||| ||||||||| |||   ||||||||||||||| ||||||||    
T  40146009 gagatgaaacataatctgccaatagtgtgctaaataaaattaggaggtagatgccatttccgagacctctttgttgtgaatgttcgaataatatcaacat 40146108  T
Q  109 catcaa 114  Q
    ||||||    
T  40146109 catcaa 40146114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 10014434 - 10014554
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||||||||  |||||||| |||| |||||||||||||||||||||||| |||| | | | ||| ||    |||||||| |||||| ||||||||    
T  10014434 gagatgaaatataatatgtcaataatgtgctaaataaaattaggaggtaaatgccctttccaaaatctctttccggtgaatgtttgaataatatcaacat 10014533  T
Q  109 catcaaatgacttgaatatct 129  Q
    |||||| |||| |||||||||    
T  10014534 catcaagtgacatgaatatct 10014554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 28846781 - 28846621
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| |||| ||||||| |||||| |||||||||||| ||||||||||| |||| ||              ||||||||||||||| ||||||||    
T  28846781 gagatgaaacataatctgtcaaaagtgtgctaaataaaattatgaggtaaatgccctttgcg-------------gtgaatgttcgaataatatcaacat 28846695  T
Q  109 catcaaatgacttgaatatctcctgtaacat----atcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| |||||||||||||||| |    ||    |||||||||||||||||| ||||||||||||||||||||    
T  28846694 catcaagtgacttgaatatctcccgctcgatgtacatcatcaagtcattgaaccacacatcgttgatcttgttg 28846621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 34228232 - 34228338
Alignment:
Q  13 tgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatc 112  Q
    ||||||||||| |||||||| |||| |||||||||| |||||||||||||  ||| | ||||||| |||   | ||||||||||||| ||||||||||||    
T  34228232 tgaaatataacatgtcaataatgtgataaataaaatgaggaggtaaatgcaatttccaagacctctttgtggtaaatgttcgaataatatcaacatcatc 34228331  T
Q  113 aaatgac 119  Q
    || ||||    
T  34228332 aagtgac 34228338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 382 - 458
Target Start/End: Original strand, 34228883 - 34228960
Alignment:
Q  382 tttaattgacagtaaaagaagaaattgaaacggct-cattaaatatagttggaaagaataggttcaggcttggtagtt 458  Q
    |||||||||| ||  ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |||||    
T  34228883 tttaattgactgtggaagaagaaattgaaatggcttcattaaatatagttggaaagaataggttcaggtttgatagtt 34228960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 557 - 608
Target Start/End: Original strand, 34229009 - 34229060
Alignment:
Q  557 atgtataaaataacaaaaagatgtgcaaaatagaatgttatgtaaatgataa 608  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  34229009 atgtacaaaataacaaaaagatgtgcaaaacagaatgttatgtaaatgataa 34229060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 42447101 - 42447034
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacct 76  Q
    ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||  ||||||| ||||    
T  42447101 gagatgaaatataacttgtcattagtgtgctaaataaaattaggaggtaaatgcatttttcgatacct 42447034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 10467861 - 10467786
Alignment:
Q  88 atgttcgaataaaatcaacatcatcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaa 156  Q
    |||||||||||| ||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||    
T  10467861 atgttcgaataatatcaacatcatcaaatgacttgattatctcccgctcgatgtaacatatcatcaagtcattgaa 10467786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 24592336 - 24592387
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaat 60  Q
    ||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  24592336 gagatgaaacataacctgccaatagtgtgctaaataaaattaggaggtaaat 24592387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 10467927 - 10467876
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaat 60  Q
    ||||||||| ||||| |||||||| |||| |||||||||||| |||||||||    
T  10467927 gagatgaaacataacttgtcaatattgtgctaaataaaattatgaggtaaat 10467876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 3435450 - 3435409
Alignment:
Q  20 taacctgtcaatagtgtggtaaataaaattaggaggtaaatg 61  Q
    ||||| |||||||||||| |||||||| ||||||||||||||    
T  3435450 taacccgtcaatagtgtgctaaataaagttaggaggtaaatg 3435409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 40470481 - 40470529
Alignment:
Q  21 aacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcg 70  Q
    |||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  40470481 aacccgtcaatagtgtgctaaataaaattagaaggtaaatg-tcttttcg 40470529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 134853 - 135034
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| |||| ||||||||| ||    ||||||||||||||| ||||||||    
T  134853 gagatgaaatataacctatcaatagcgtgctaaataaaattaggaggtaaatgccctttccgagacctctttccggtgaatgttcgaataatatcaacat 134952  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgcacaa 183  Q
    |||||| ||||||||||||||||       |||||||||||||||||||||| ||| |||||| ||| ||||||||||||||    
T  134953 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccacacattgttcatcttgttgcacaa 135034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 52753819 - 52753992
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| ||||||||||||| || ||||||||||||||||||| | |||| ||||||||| |||    |||||||||||||| ||||||||    
T  52753819 gagatgaaacataacttgtcaatagtgtgctagataaaattaggaggtaaataccctttccgagacctctttgc---gaatgttcgaataatatcaacat 52753915  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||| |||||    
T  52753916 catcaaatgacttgaatatctcccgttcgatgtaacatatcatcaagtcattgaaccacacatcgttgatcatgttg 52753992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 9637297 - 9637121
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||| |||| ||||||||| |||   ||||||||| ||||| ||||||||    
T  9637297 gagatgaaacataacctatcaatagtgtgctaaataaaattaggatgtaaatgccctttccgagacctctttgcggtgaatgttcaaataatatcaacat 9637198  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| ||||||||||||| ||       |||||||||||||||||||||||||| || |||| ||||||||||||    
T  9637197 catcaagtgacttgaatatcacccgctcggtgtaacatatcatcaagtcattgaaccacgcatcattgatcttgttg 9637121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 25017554 - 25017386
Alignment:
Q  17 atataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaat 116  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| ||||  |||||||| |||   |||| |||||||||| |||||||||||||| |    
T  25017554 atataacctgtcaatagtgtgctaaataaaattaggaggtatatgccctttctgagacctctttgcggtgaacgttcgaataatatcaacatcatcaagt 25017455  T
Q  117 gacttgaatatctc-------ctgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    || |||||||||||        ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  25017454 gatttgaatatctctcgctcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttg 25017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 26272931 - 26273105
Alignment:
Q  12 atgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcat 111  Q
    |||||||||||| || |||||||||| ||||||||||||| |||||| ||| |||| ||||||||  |||  |||||||||||||||| || ||||||||    
T  26272931 atgaaatataacatgccaatagtgtgctaaataaaattagtaggtaattgccctttccgagacctgtttgcgatgaatgttcgaataatattaacatcat 26273030  T
Q  112 caaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||  ||||||||||||||||       |||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  26273031 cacgtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacacatcgttgattttgttgc 26273105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 14499073 - 14498898
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| ||||||||||||  |||||| ||||||||||||||||  ||||  |||||||| |||  |||||||||||||||| ||||||||    
T  14499073 gagatgaaacataacttgtcaatagtgttttaaatataattaggaggtaaatgtcctttctgagacctctttgcgatgaatgttcgaataatatcaacat 14498974  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||||||||||||||||||||       ||||| ||||||||||||||||| || ||| |||||||||| |||||    
T  14498973 catcaaatgacttgaatatctcccgctcgatgtaagatatcatcaagtcattg-accacaaatcgttgatcatgttg 14498898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 398 - 608
Target Start/End: Original strand, 26273123 - 26273338
Alignment:
Q  398 agaagaaattgaaacggct-cattaaatatagttggaaagaataggttcaggcttggtagt------------tcatatatattatgatgattcacaa-t 483  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||            ||| | ||||||||||||||||||| |    
T  26273123 agaagaaattgaaacgacttcattaaatatagttggaaagaataggttcaggcttgatagttgataccaataatcacacatattatgatgattcacaatt 26273222  T
Q  484 tcacatgaaattccatataatataacaagttctattaacaattgaacacatgaaattccacctcacagagactatgtataaaataacaaaaagatgtgca 583  Q
    ||||||| |||  |||||||||||||||||||||||        ||||||||||||||||||||||  || | | ||| |||||||||||||||||||||    
T  26273223 tcacatgtaatctcatataatataacaagttctatt--------aacacatgaaattccacctcacgcaggc-aggtacaaaataacaaaaagatgtgca 26273313  T
Q  584 aaatagaatgttatgtaaatgataa 608  Q
    |||||||||  ||||||||||||||    
T  26273314 aaatagaattatatgtaaatgataa 26273338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 40864718 - 40864894
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||| || ||||||||| ||||||||| |||||||||||||||||||||||| ||||   | ||||| |||   ||||||||||||||| ||||||||    
T  40864718 gagatgtaacataacctgttaatagtgtgctaaataaaattaggaggtaaatgccctttctaaaacctctttgcggtgaatgttcgaataatatcaacat 40864817  T
Q  109 catcaaatgacttgaatatctc-------ctgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
     ||||| ||||||||||||| |        ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  40864818 tatcaagtgacttgaatatccctcgttcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttg 40864894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 48606611 - 48606787
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| |||| ||| |||||||||| |||||||||||| ||||||||||| ||||   ||||||| |||   ||| |||| |||||| ||||||||    
T  48606611 gagatgaaacataatctgccaatagtgtgctaaataaaattatgaggtaaatgccctttcgaagacctctttgcggtgagtgtttgaataatatcaacat 48606710  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
     ||||| | ||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||    
T  48606711 tatcaagttacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 48606787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 17874954 - 17874851
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||   |||||||| |||||| ||||||||    
T  17874954 gagatgaaatataatctgtcaatagtgtggtaaataaaattagaaggtaaatgatcttttcgagacctctttgcggtgaatgtttgaataatatcaacat 17874855  T
Q  109 catc 112  Q
    ||||    
T  17874854 catc 17874851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 32379865 - 32380027
Alignment:
Q  19 ataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaatga 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||   ||||||| ||||| |||   | ||||||||||||| |||||||||||||| |||    
T  32379865 ataacctgtcaatagtgtgctaaataaaattaggaggtaaatgtcattttcgatacctctttg-cgtaaatgttcgaataatatcaacatcatcaagtga 32379963  T
Q  119 cttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
     ||||||||||||       ||||||||   ||||||||||||||| ||||||||||||||||||||    
T  32379964 attgaatatctcccgtttggtgtaacat---atcaagtcattgaaccacacatcgttgatcttgttg 32380027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 35948977 - 35949128
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||||||| || || |||| |||  ||||||||||||||||||||||  |||| ||||||||| ||    ||||||||||||||| ||||||||    
T  35948977 gagatgaaatataatctatctatagcgtgcaaaataaaattaggaggtaaatgtcctttccgagacctcttttcggtgaatgttcgaataacatcaacat 35949076  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcatt 153  Q
    |||||| ||||||||||||||||       ||||||||||||||||||||||    
T  35949077 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatt 35949128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 30559004 - 30559180
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| |||| ||  |||||||||| ||||||||||||||||||||||    |||  |||| ||  ||    ||||||||||||||| |||| |||    
T  30559004 gagatgaaacataatctaccaatagtgtgctaaataaaattaggaggtaaatatcatttatgagatctatttacggtgaatgttcgaataatatcagcat 30559103  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| |||||||||||||||        ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  30559104 catcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagtcatagaaccacacatcgttgatcttgttg 30559180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 17127539 - 17127438
Alignment:
Q  85 tgaatgttcgaataaaatcaacatcatcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgtt 177  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||       |||||||||||||||||||||| ||| |||||| ||||||||||||    
T  17127539 tgaatgttcgaataatatcaacatcatcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgtt 17127440  T
Q  178 gc 179  Q
    ||    
T  17127439 gc 17127438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 21973820 - 21973968
Alignment:
Q  42 ataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaatgacttgaatatctcc-------tgt 134  Q
    ||||||||||||||||||||| |||| |||||  || |||   ||||||||||||||| |||||  ||||||| ||| ||||||||||||       |||    
T  21973820 ataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatctcccgctcagtgt 21973919  T
Q  135 aacatatcatcaagtcattgaactacacatcgttgatcttgttgcacaa 183  Q
    ||||||||||||| ||||| ||| || ||| ||| ||||||||||||||    
T  21973920 aacatatcatcaaatcatttaaccactcattgttaatcttgttgcacaa 21973968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 11843899 - 11843950
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatg 61  Q
    ||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  11843899 agatgaaatataacctaccaatagtgtgctaaataaaattaggaggtaaatg 11843950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 30054997 - 30054875
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| |||||||| |||| |||||||||||||||||||||||   |||  || ||||| |||    ||| ||||||||||  |||| ||    
T  30054997 gagatgaaacataacgtgtcaataatgtgctaaataaaattaggaggtaaatgtcatttatgatacctctttgcggagaaggttcgaataatgtcaatat 30054898  T
Q  109 catcaaatgacttgaatatctcc 131  Q
     ||||| ||||||||||||||||    
T  30054897 gatcaagtgacttgaatatctcc 30054875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 170445 - 170500
Alignment:
Q  6 agtgagatgaaatataacct-gtcaatagtgtggtaaataaaattaggaggtaaat 60  Q
    |||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||    
T  170445 agtgagatgaaatataaccttgccaataatgtgctaaataaaattaggaggtaaat 170500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 661
Target Start/End: Original strand, 26273573 - 26273626
Alignment:
Q  608 aagaacatgtttatgctgtgcgcgtgtgagaaatttcatgatttgcccaatttt 661  Q
    |||||| ||||| |||||||||||||||||||||||||  ||||||| ||||||    
T  26273573 aagaacgtgtttctgctgtgcgcgtgtgagaaatttcagaatttgcctaatttt 26273626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 33489867 - 33489827
Alignment:
Q  21 aacctgtcaatagtgtggtaaataaaattaggaggtaaatg 61  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  33489867 aacccgtcaatagtgtgctaaataaaattaggaggtaaatg 33489827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 41972262 - 41972302
Alignment:
Q  21 aacctgtcaatagtgtggtaaataaaattaggaggtaaatg 61  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  41972262 aacccgtcaatagtgtgctaaataaaattaggaggtaaatg 41972302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 28463252 - 28463203
Alignment:
Q  28 caatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctc 77  Q
    |||||||||| |||||||||||||||||| ||||| |||| | |||||||    
T  28463252 caatagtgtgctaaataaaattaggaggtgaatgccctttccaagacctc 28463203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 7e-42; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 3055655 - 3055482
Alignment:
Q  12 atgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcat 111  Q
    |||||| ||||  ||||||||||||| ||||||||||||||||||||||||  |||  ||||||||||||    |||||||||||||| |||||||||||    
T  3055655 atgaaacataaattgtcaatagtgtgctaaataaaattaggaggtaaatgccatttatgagacctcattgcgcggaatgttcgaataatatcaacatcat 3055556  T
Q  112 caaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||| |||||    
T  3055555 caaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgttgatcatgttg 3055482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 204026 - 203846
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||||||||  |||| ||||||||| ||    ||||||||||||||| ||||||||    
T  204026 gagatgaaatataatttgtcaatagtgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttccggtgaatgttcgaataatatcaacat 203927  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgcacaa 183  Q
    |||||| ||||||||||||||||       ||||||||||||||||||||||  | ||||||| ||||||||||||||||||    
T  203926 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttta-tacacattgttgatcttgttgcacaa 203846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 23244569 - 23244745
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||  |||||||| |||   | ||||||| ||||| ||||||||    
T  23244569 gagatgaaatataatctgtcaatagtgtggtaaataaaattagcaggtacatgccctttctgagacctcgttgcggttaatgttcaaataatatcaacat 23244668  T
Q  109 catcaaatgacttgaatatctcctg-------taacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| ||||| ||||| || | |       |||||||||||||||||||||||| ||||||||||||||||||||    
T  23244669 catcaagtgactagaataacttccgctcgacataacatatcatcaagtcattgaacgacacatcgttgatcttgttg 23244745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 8785958 - 8785782
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| |||||||||||||| | || ||||||||||||||||||||   | |||||||||||||  |||   ||||||||||||||| ||||| ||    
T  8785958 gagatgaaacataacctgtcaataatatgctaaataaaattaggaggtaagaacccttttcgagacctatttgcggtgaatgttcgaataatatcaatat 8785859  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| ||| ||||||||||||       ||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  8785858 catcaactgaattgaatatctcccgcttgatgtaatatattatcaagtcattgaaccacacatcgttgatcttgttg 8785782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 1280522 - 1280377
Alignment:
Q  41 aataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaatgacttgaatatctcc-------tg 133  Q
    ||||||||||||||||||||||  ||| ||||||||| |||   ||||||||||||||| |||||||||||||| ||||||||||||||||       ||    
T  1280522 aataaaattaggaggtaaatgccttttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtg 1280423  T
Q  134 taacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    |||||||||||||| ||||||||| |||||| ||||||||| ||||    
T  1280422 taacatatcatcaaatcattgaaccacacattgttgatcttattgc 1280377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 11852891 - 11852715
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||  ||||||||||||| ||||||||||||| |||||||| ||||||   ||||||| |||   | ||||||||||||| ||||||||    
T  11852891 gagatgaaagataatttgtcaatagtgtgctaaataaaattagaaggtaaatactctttcttagacctctttgtgttaaatgttcgaataatatcaacat 11852792  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| ||| || |||||||||       |||||||||||||||||||||||||| ||||||| || |||||||||    
T  11852791 catcaagtgagttaaatatctcccgttcggtgtaacatatcatcaagtcattgaaccacacatctttcatcttgttg 11852715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 22712898 - 22713045
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||| || ||||| || |||||||||| |||||||||||||||||||||||||||||  |||||||| |||   |||||||| |||||| ||||||||    
T  22712898 gagatgtaacataacatgacaatagtgtgctaaataaaattaggaggtaaatgctctttctgagacctctttgcggtgaatgtttgaataatatcaacat 22712997  T
Q  109 catcaaatgacttgaatatctcctgtaacatatcatcaagtcattgaac 157  Q
    |||||| |||| |||||||| || |   |||||||||||||||||||||    
T  22712998 catcaagtgacatgaatatcccccg-ctcatatcatcaagtcattgaac 22713045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 414 - 609
Target Start/End: Complemental strand, 1280341 - 1280143
Alignment:
Q  414 gctcattaaatatagttggaaagaataggttcaggcttggtagttcata-ta--------tattatgatgattcacaatt-cacatgaaattccatataa 503  Q
    |||| ||||||||||||||||||||||| |||| ||||| ||||| ||| ||        |||||||||||||||||||| |||||||||| ||||||||    
T  1280341 gctctttaaatatagttggaaagaatagtttcatgcttgatagttgatactaatcacacttattatgatgattcacaatttcacatgaaatcccatataa 1280242  T
Q  504 tataacaagttctattaacaattgaacacatgaaattccacctcacagagactatgtataaaataacaaaaagatgtgcaaaatagaatgttatgtaaat 603  Q
    ||||| |||||  ||| |       ||||||||||||||||||||   || ||||||  ||||||||||||| ||||||||||||||||| |||||||||    
T  1280241 tataataagtttgattta-------acacatgaaattccacctcatgcaggctatgtgcaaaataacaaaaacatgtgcaaaatagaatgctatgtaaat 1280149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 27168802 - 27168924
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||||   |||||||||| |||||||||||||||||||||||| ||||  |||||||||||    ||||||||||||||| ||||||||    
T  27168802 gagatgaaacataaccatccaatagtgtgctaaataaaattaggaggtaaatgccctttatgagacctcatttcggtgaatgttcgaataatatcaacat 27168901  T
Q  109 catcaaatgacttgaatatctcc 131  Q
     ||||| ||||||||||||||||    
T  27168902 tatcaagtgacttgaatatctcc 27168924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 2229091 - 2228971
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctctt-ttcgagacctcattgaaatgaatgttcgaataaaatcaaca 107  Q
    |||||||||||||||||  |||||| ||| |||||||||||||||||||||||| |||  | || ||||| |||  |||||||||| ||||| |||||||    
T  2229091 gagatgaaatataacctaccaatagcgtgctaaataaaattaggaggtaaatgcccttcctaga-acctctttgcgatgaatgttcaaataatatcaaca 2228993  T
Q  108 tcatcaaatgacttgaatatct 129  Q
    |||||||||||||| |||||||    
T  2228992 tcatcaaatgacttaaatatct 2228971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 22542062 - 22541911
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||| ||||||||||||| |||||| ||| |||||||||||| ||||||||||| |||| || |||||| ||  |  |||||||||||||| || |||||    
T  22542062 gagaagaaatataacctgacaatagcgtgctaaataaaattatgaggtaaatgccctttccgcgacctctttcgagggaatgttcgaataatattaacat 22541963  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcatt 153  Q
    |||| | |||||||||||||| |       ||||||||||||||||||||||    
T  22541962 catcgagtgacttgaatatcttccgttcgatgtaacatatcatcaagtcatt 22541911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 26540674 - 26540831
Alignment:
Q  29 aatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaatgacttgaatatc 128  Q
    ||||| ||| || ||||||||||||||||||||| ||||  ||||  || |||   ||||||||||||||| |||||  ||||||| ||| |||||||||    
T  26540674 aatagcgtgctagataaaattaggaggtaaatgccctttctgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatc 26540773  T
Q  129 tcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    |||       |||||||||||||||| ||||| ||| || ||| ||| ||||||||||    
T  26540774 tcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgc 26540831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 19518971 - 19519053
Alignment:
Q  39 taaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaatgactt 121  Q
    |||||||||||||| ||||||||  |||| | | ||||| |||   ||||||||||||||| |||||||||||||| ||||||    
T  19518971 taaataaaattaggtggtaaatgacctttccaatacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgactt 19519053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 31989204 - 31989028
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    |||||||||||||||||| ||| | ||| |||||||||||||||||||||||| |||| || |||||| ||  | ||||||||||||||| |||||||||    
T  31989204 agatgaaatataacctgttaatggcgtgctaaataaaattaggaggtaaatgccctttccgcgacctctttcgagtgaatgttcgaataatatcaacatc 31989105  T
Q  110 atcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||| ||||||||||||||||       |||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  31989104 atcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgc 31989028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 220 - 363
Target Start/End: Original strand, 33167580 - 33167729
Alignment:
Q  220 aagttcatcgggctctatcatgcttttagcttttaaacaaagggtagaaa------atatctatttccttcctatatggttaacaaatgtgattcaatta 313  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||      |||||| ||||||||||||| | |||||||||||||||| ||||    
T  33167580 aagttcatcaggctctgtcatgcttttagcttttaaacaaagggtagaaattcatcatatctctttccttcctataggattaacaaatgtgattcgatta 33167679  T
Q  314 ctcatcagcattaattaatattttagcatttgatttgttgaacagtccat 363  Q
    |||| ||||||||||||||||||||||||||  |||| ||||||||||||    
T  33167680 ctcaacagcattaattaatattttagcatttattttgctgaacagtccat 33167729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 51262145 - 51261979
Alignment:
Q  19 ataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaatga 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||   |||||||||||||||| |||||||||||||| |||    
T  51262145 ataacctgtcaatagtgtgctaaataaaattaggaggtaaatgttcttttcaagacctctttacgatgaatgttcgaataatatcaacatcatcaagtga 51262046  T
Q  119 cttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    ||||||||||| |       |||||||||||||||| |||||| || |||| |||||||||||||||    
T  51262045 cttgaatatcttccgcttagtgtaacatatcatcaattcattgtaccacacttcgttgatcttgttg 51261979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 24908393 - 24908569
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    |||||||||||||||||| ||||| ||| |||||||||||||||||||||| | |||| || |||||| ||  | ||||||||||||||| |||||||||    
T  24908393 agatgaaatataacctgtgaatagcgtgctaaataaaattaggaggtaaataccctttccgcgacctctttcgagtgaatgttcgaataatatcaacatc 24908492  T
Q  110 atcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
     ||||  |||||||||||||||       |||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  24908493 ttcaagcgacttgaatatctcctgcttggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgc 24908569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 53710573 - 53710397
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |||| || |||||| ||  | ||||||||||||||| |||||||||    
T  53710573 agataaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgccctttccgtgacctctttcgagtgaatgttcgaataatatcaacatc 53710474  T
Q  110 atcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||| ||||||||||||||||       ||||||| |||||||||||||| ||| |  ||| ||||||||||||||    
T  53710473 atcaagtgacttgaatatctcccgctcggtgtaacagatcatcaagtcattcaaccatccattgttgatcttgttgc 53710397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 43137299 - 43137126
Alignment:
Q  12 atgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttc-gagacctcattgaaatgaatgttcgaataaaatcaacatca 110  Q
    ||||||||||| ||| |||||||||| |||||||||||||||||||||| | |||||| |||||||| |||    |||||||||||||| ||||||||||    
T  43137299 atgaaatataatctgccaatagtgtgctaaataaaattaggaggtaaatac-cttttctgagacctc-ttgcggcgaatgttcgaataatatcaacatca 43137202  T
Q  111 tcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    |||| ||||||||||||||||       |||||||||||||||||||||||||| | |||||||||||||||||||    
T  43137201 tcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccatacatcgttgatcttgttgc 43137126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 37381871 - 37382045
Alignment:
Q  12 atgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcat 111  Q
    |||||||||||||||||||||| ||| | ||||||||||||||| |||||   ||| ||||||||| ||| | ||||||||||||||| || ||||||||    
T  37381871 atgaaatataacctgtcaatagcgtgctgaataaaattaggaggcaaatgtcatttccgagacctctttgcagtgaatgttcgaataatataaacatcat 37381970  T
Q  112 caaatgacttgaatatctc-------ctgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    |||||||||||||||||||        ||||| |||||||| ||||||| ||| |||||||||||||||||||||    
T  37381971 caaatgacttgaatatctcatgctcagtgtaatatatcatcgagtcatttaaccacacatcgttgatcttgttgc 37382045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 3856875 - 3857048
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| || || || ||||| |||| ||||||||||||||||||||||  |||||  |||||||| |||   |||||||| |||||| ||||||||    
T  3856875 gagatgaaacattacatgccaataatgtgctaaataaaattaggaggtaaattttctttctgagacctctttgcggtgaatgtttgaataatatcaacat 3856974  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttg 175  Q
    |||||||||||||||||||||||        ||||||| ||||||||||||| ||| |||||||||||||||||    
T  3856975 catcaaatgacttgaatatctcccactctgagtaacatgtcatcaagtcatttaaccacacatcgttgatcttg 3857048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 24988812 - 24988921
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| |||| ||| |||||||||| |||||||||||||||| || |||| |||| ||||||||| |||   ||||||||||||||| ||||||||    
T  24988812 gagatgaaacataatctggcaatagtgtgctaaataaaattaggagatacatgccctttccgagacctctttgcggtgaatgttcgaataatatcaacat 24988911  T
Q  109 catcaaatga 118  Q
    ||||||||||    
T  24988912 catcaaatga 24988921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 270 - 359
Target Start/End: Complemental strand, 43136598 - 43136509
Alignment:
Q  270 atatctatttccttcctatatggttaacaaatgtgattcaattactcatcagcattaattaatattttagcatttgatttgttgaacagt 359  Q
    |||||||||||||||||||||   ||||||||||||| | ||||||||||  |||||||||||||||||||||||  |||||||||||||    
T  43136598 atatctatttccttcctatattaataacaaatgtgatccgattactcatcgacattaattaatattttagcatttagtttgttgaacagt 43136509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 15668111 - 15667973
Alignment:
Q  47 attaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaatgacttgaatatctcc-------tgtaacat 139  Q
    ||||||||||||||||  ||| ||| ||||| |||   || |||||||||||| |||||||||||||| ||||||||||||||||       | ||||||    
T  15668111 attaggaggtaaatgccttttccgatacctctttgttgtgcatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtataacat 15668012  T
Q  140 atcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||||||| ||||||| ||||||| ||||||||||||    
T  15668011 atcatcaagttattgaaccacacatccttgatcttgttg 15667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 465 - 608
Target Start/End: Original strand, 37382557 - 37382693
Alignment:
Q  465 tattatgatgattcacaatt-cacatgaaattccatataatataacaagttctattaacaattgaacacatgaaattccacctcacagagactatgtata 563  Q
    |||||||||||||| ||||| || |||||||  ||||||||||||||||||| || ||||        ||||||||||||| ||||   ||| ||||| |    
T  37382557 tattatgatgattcccaatttcatatgaaatctcatataatataacaagttcgatcaaca--------catgaaattccacttcacgccgacaatgtaca 37382648  T
Q  564 aaataacaaaaagatgtgcaaaatagaatgttatgtaaatgataa 608  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||    
T  37382649 aaataacaaaaagatgtgtaaaatagaatgatatgtaaatgataa 37382693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 22934798 - 22934910
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||||||||  | ||||||||||  |||| ||||||| ||||||||||  |||| ||||||||| |||   ||||||||| ||||| ||||||||    
T  22934798 gagatgaaatataatatatcaatagtgtcttaaacaaaattaagaggtaaatgacctttccgagacctctttgcggtgaatgttctaataatatcaacat 22934897  T
Q  109 catcaaatgactt 121  Q
    |||||| ||||||    
T  22934898 catcaagtgactt 22934910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 465 - 604
Target Start/End: Complemental strand, 43136413 - 43136281
Alignment:
Q  465 tattatgatgattcacaatt-cacatgaaattccatataatataacaagttctattaacaattgaacacatgaaattccacctcacagagactatgtata 563  Q
    ||||||||||||| |||||| |||||||||| | |||||||||||||||||| |||        | |||||||||||| |||||     |   ||||| |    
T  43136413 tattatgatgattaacaatttcacatgaaatcctatataatataacaagttcgatt--------agcacatgaaattcgacctcgagccggtaatgtaca 43136322  T
Q  564 aaataacaaaaagatgtgcaaaatagaatgttatgtaaatg 604  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43136321 aaataacaaaaagatgtgcaaaatagaatgttatgtaaatg 43136281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 51408609 - 51408666
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttt 67  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||    
T  51408609 agatgaaatataacatgtcaatagcgtgctaaataaaattaggaggtaaatgcccttt 51408666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 38282563 - 38282515
Alignment:
Q  29 aatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctc 77  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  38282563 aatagtgtgctaaataaaattatgaggtaaatgctctttccgagacctc 38282515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 9743444 - 9743379
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagac 74  Q
    ||||||||| |||||||  |||||||||| |||||||||||| ||||||||| |||| | ||||||    
T  9743444 gagatgaaacataacctaccaatagtgtgctaaataaaattacgaggtaaatactctctccgagac 9743379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 43136484 - 43136438
Alignment:
Q  407 tgaaacggct-cattaaatatagttggaaagaataggttcaggcttg 452  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||    
T  43136484 tgaaacggcttcattaaatatagttggaaagaataaattcaggcttg 43136438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 43585979 - 43585933
Alignment:
Q  15 aaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatg 61  Q
    ||||||||||||  ||||| ||| |||||||||||||||||||||||    
T  43585979 aaatataacctgataatagcgtgctaaataaaattaggaggtaaatg 43585933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 12539749 - 12539574
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| | ||||||| |||   ||||||||||||||| ||||||||    
T  12539749 gagatgaaacataacgtgtcaatagtgtgctaaataaaattaggaggtaaatgttctttccaagacctctttgcggtgaatgttcgaataatatcaacat 12539650  T
Q  109 catcaaatgacttgaatatctcctg------taacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| ||||||||||||||  ||      |||||||||||||||||||||||| || ||| |||||||||||||    
T  12539649 catcaagtgacttgaatatcttatgctcggttaacatatcatcaagtcattgaaccacgcattgttgatcttgttg 12539574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 19951833 - 19952007
Alignment:
Q  12 atgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcat 111  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||||||||| |||   ||||||||||||||| |||||||||||    
T  19951833 atgaaatataacctgtcaatagtgtgctaaattaaattagaaggtaaatgcccttttcgagacctctttgcggtgaatgttcgaataatatcaacatcat 19951932  T
Q  112 caaatgacttgaatatctc-------ctgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||| |||||||||||||||        ||| ||||||| |||||||||||||| | |||||||| ||||||||||    
T  19951933 caagtgacttgaatatctctcgctcagtgtgacatatcgtcaagtcattgaaccatacatcgttaatcttgttgc 19952007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 35649659 - 35649831
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||||||||||| |||| | |||  ||||||||||||||| |||||||  |||||||||| ||| ||| | ||||||||  ||||| ||||||||    
T  35649659 gagatgaaatataacctatcaaaaatgtactaaataaaattaggaagtaaatgtccttttcgagatctctttgcagtgaatgtttcaataatatcaacat 35649758  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatctt 174  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||    
T  35649759 catcaaatgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaacaacacatcgttgatctt 35649831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 382 - 608
Target Start/End: Original strand, 19952012 - 19952244
Alignment:
Q  382 tttaattgacagtaaaagaa--gaaattgaaacggct-cattaaatatagttggaaagaataggttcaggcttggtagttcatat----------atatt 468  Q
    ||||||||||| || |||||  ||||||||||||||| | ||||||||||||||||||||||||||||| |||| || || |||           | |||    
T  19952012 tttaattgacaatagaagaaaagaaattgaaacggcttcgttaaatatagttggaaagaataggttcagacttgataattgatactagtaatcacacatt 19952111  T
Q  469 atgatgattcacaatt-cacatgaaattccatataatataacaagttctattaacaattgaacacatgaaattccacctcacagagactatgtataaaat 567  Q
    |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||        |||||||||||||||||   || | ||||| |||||    
T  19952112 atgatgattcacaatttcacatgtaatcccatataatataacaagttctattaaca--------catgaaattccacctcatgtaggcaatgtacaaaat 19952203  T
Q  568 aacaaaaagatgtgcaaaatagaatgttatgtaaatgataa 608  Q
    ||||||||||||||||||||||| || ||| ||||||||||    
T  19952204 aacaaaaagatgtgcaaaatagagtgctatataaatgataa 19952244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 33453190 - 33453364
Alignment:
Q  12 atgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcat 111  Q
    |||||||||||| || ||||||| || |||||||||||||||||||||||||||||  || ||||| |||   ||||||||||||||| |||||||||||    
T  33453190 atgaaatataacttgccaatagtctgctaaataaaattaggaggtaaatgctctttctgatacctctttgcggtgaatgttcgaataatatcaacatcat 33453289  T
Q  112 caaatgacttgaatatctcc-------tgt-aacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||| |||||| |||||||||       ||| ||||||| || ||||||||| || |||||||||||||||||||||    
T  33453290 caagtgacttaaatatctcccgctcggtgtaaacatatgatgaagtcattg-accacacatcgttgatcttgttgc 33453364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 34317482 - 34317642
Alignment:
Q  19 ataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaatga 118  Q
    |||||||| |||||||||| ||| |||||||||||||||||||||||||| |||||||| |||   |||      ||| || ||||||||||| || |||    
T  34317482 ataacctgccaatagtgtgctaattaaaattaggaggtaaatgctctttttgagacctctttgcggtga------gaacaatatcaacatcatgaagtga 34317575  T
Q  119 cttgaatatctc-------ctgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    ||||||||||||        |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  34317576 cttgaatatctcttactcggtgtaacatatcatcaagtcattgaaccacacatcattgatcttgttg 34317642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 22483725 - 22483548
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||| ||||| |||||  ||||| ||| || ||||||||||||||||||||| |||| |||||  || |||   ||||||||||||||| |||||  |    
T  22483725 gagatggaatattacctgcaaatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgt 22483626  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    |||||| ||| ||||||||||||       |||||||||||||||||||||| ||| |  ||| ||| ||||||||||    
T  22483625 catcaagtgatttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccattcattgttaatcttgttgc 22483548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 22464847 - 22464669
Alignment:
Q  9 gagatgaaatataacctgtcaa-tagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaaca 107  Q
    |||||| ||||| ||||| ||| ||| ||| || ||||||||||||||||||||| ||||||||||  || |||   |||||||| |||||| |||||      
T  22464847 gagatggaatattacctggcaaatagcgtgctagataaaattaggaggtaaatgcccttttcgagatttctttgcggtgaatgtttgaataatatcaatg 22464748  T
Q  108 tcatcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||||| ||| ||||||||||||       |||||||||||||||| ||||| ||| || ||| ||| ||||||||||    
T  22464747 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgc 22464669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 34526529 - 34526351
Alignment:
Q  9 gagatgaaatataacctgtcaa-tagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaaca 107  Q
    |||||| ||||| ||||| ||| ||| ||| || ||||||||||||||||||||| |||| |||||  || |||   ||||||||||||||| |||||      
T  34526529 gagatggaatattacctgccaaatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatg 34526430  T
Q  108 tcatcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||||| ||| ||||||||||||       |||||||||||||||| ||||| ||| || ||| ||| ||||||||||    
T  34526429 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgc 34526351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 31392554 - 31392486
Alignment:
Q  31 tagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataa 99  Q
    ||||||| |||||||||||| ||||||||||| |||||||||||||| ||||  | |||||||||||||    
T  31392554 tagtgtgctaaataaaattaagaggtaaatgcccttttcgagacctctttgaggtaaatgttcgaataa 31392486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 18425956 - 18426072
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggta----aataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatca 104  Q
    ||||||||||||||| ||||||||||||| ||    ||||||||||||||||||||    |||| |||||||| ||    ||||||||||||||| ||||    
T  18425956 gagatgaaatataacttgtcaatagtgtgataaattaataaaattaggaggtaaataacatttttgagacctctttacggtgaatgttcgaataatatca 18426055  T
Q  105 acatcatcaaatgactt 121  Q
    |||| ||||| ||||||    
T  18426056 acattatcaagtgactt 18426072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 13309765 - 13309707
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttt 67  Q
    |||||||||||||| |||||||||||||| ||||||| |||| ||||||||||| ||||    
T  13309765 gagatgaaatataatctgtcaatagtgtgctaaataatattatgaggtaaatgcccttt 13309707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 13308816 - 13308771
Alignment:
Q  85 tgaatgttcgaataaaatcaacatcatcaaatgacttgaatatctc 130  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||    
T  13308816 tgaatgttcgaataatatcaacatcatcaagtgacttgaatatctc 13308771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 34907758 - 34907640
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||||||||| |||||||||||  |||||   |||||||||||||||| |||||||| || ||  |   ||||||||| |||| | |||||||     
T  34907758 gagatgaaatataacccgtcaatagtgtcttaaat---attaggaggtaaatgcccttttcgaaacttctctccgatgaatgtttgaattatatcaacac 34907662  T
Q  109 catcaaatgacttgaatatctc 130  Q
    |||||| |||| ||| ||||||    
T  34907661 catcaagtgacctgagtatctc 34907640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 7886661 - 7886706
Alignment:
Q  13 tgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaa 58  Q
    ||||||||||| | ||||||||||| ||||||||||||||||||||    
T  7886661 tgaaatataacatatcaatagtgtgctaaataaaattaggaggtaa 7886706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 31392972 - 31392927
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggag 54  Q
    |||||| || ||||||||||||||||||| ||||||||||||||||    
T  31392972 gagatgtaacataacctgtcaatagtgtgctaaataaaattaggag 31392927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 35651564 - 35651605
Alignment:
Q  176 ttgcacaacattcatattctcaatacttgttctatcaaccaa 217  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  35651564 ttgcacaacattcacattctgaatacttgttctatcaaccaa 35651605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 26656340 - 26656392
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatg 61  Q
    |||||||||||||||||   |||||||||  ||||||||||||||||||||||    
T  26656340 gagatgaaatataacctactaatagtgtgcgaaataaaattaggaggtaaatg 26656392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 593
Target Start/End: Original strand, 33453812 - 33453940
Alignment:
Q  458 tcatatatattatgatgattcacaattc-acatgaaattccatataatataacaagttctattaacaattgaacacatgaaattccacctcacagagact 556  Q
    ||||| |||||||||| ||||||||||  ||||||||| |||||||| ||||||| ||  |||||||        | |||||||||||||||   || |     
T  33453812 tcatacatattatgataattcacaattttacatgaaatcccatataaaataacaaatttgattaaca--------cgtgaaattccacctcatgcaggca 33453903  T
Q  557 atgtataaaataacaaaaagatgtgcaaaatagaatg 593  Q
    ||| | ||||||||||| |||||||||||||||||||    
T  33453904 atgcacaaaataacaaatagatgtgcaaaatagaatg 33453940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 1955005 - 1954951
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgct 63  Q
    |||||||||||||| |||||||||  ||| ||||||||||||| | |||||||||    
T  1955005 gagatgaaatataatctgtcaataacgtgctaaataaaattagaaagtaaatgct 1954951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 45121396 - 45121340
Alignment:
Q  21 aacctgtcaatagtgtggtaaataaaattaggaggtaaatgctctttt-cgagacctc 77  Q
    |||||| |||||||||  ||||||||||||||||||||||| |||||| |||||||||    
T  45121396 aacctgccaatagtgttctaaataaaattaggaggtaaatg-tcttttccgagacctc 45121340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 12180525 - 12180700
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    |||||||| |||||||||||||| |||| ||||||||||||| |||||||||| |||  ||||||||| |||   ||||||||||||||| ||||||| |    
T  12180525 agatgaaacataacctgtcaataatgtgctaaataaaattagaaggtaaatgcccttcccgagacctctttgcggtgaatgttcgaataatatcaacaac 12180624  T
Q  110 atcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    ||||| |||||||||| |||||       |||||||||||||||||||||||||| |||||  |||||||||||||    
T  12180625 atcaagtgacttgaatttctcccactcggtgtaacatatcatcaagtcattgaaccacacaatgttgatcttgttg 12180700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 11971135 - 11970964
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||  |||||||| ||    |||||||||| | || ||||||||    
T  11971135 gagatgaaacataacctgtcaatagtgtgctaaataaaattaggaggtaaatgccctttctgagacctc-tttcggtgaatgttcgcaaaatatcaacat 11971037  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatctt 174  Q
    |||||| |||||||||||||| |       |||||||||| ||||||||||||||| ||||||||||||||||    
T  11971036 catcaagtgacttgaatatcttccgctcggtgtaacatatgatcaagtcattgaaccacacatcgttgatctt 11970964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 3051041 - 3050917
Alignment:
Q  9 gagatgaaatataacc--tgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaac 106  Q
    ||||||||||||||||  ||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||    |||||||| |||||| ||||||    
T  3051041 gagatgaaatataacccgtgtcaatagtgtgctaaataaaattaggtggtaaatgctctttccgagacctctttccggtgaatgtttgaataatatcaac 3050942  T
Q  107 atcatcaaatgacttgaatatctcc 131  Q
    |||||||| ||||||||||||||||    
T  3050941 atcatcaagtgacttgaatatctcc 3050917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 25599331 - 25599159
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattg---aaatgaatgttcgaataaaatcaa 105  Q
    ||||||||||||||| || |||||||||| ||||| ||||||||| |||||||| |||| ||||||||| |||     |||||||||||||||| |||||    
T  25599331 gagatgaaatataacttgccaatagtgtgttaaatcaaattaggacgtaaatgccctttccgagacctctttgcgatgatgaatgttcgaataatatcaa 25599232  T
Q  106 catcatcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgat 171  Q
    ||||||||| |||||||| |||||||       ||||||||| ||||||||||||||||  ||| ||||||||    
T  25599231 catcatcaagtgacttgattatctcccactcgatgtaacataccatcaagtcattgaaccgcacgtcgttgat 25599159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 24074588 - 24074411
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaat-gaatgttcgaataaaatcaaca 107  Q
    |||||||||||||| ||||||| |  ||| ||||||||||||||||||||||| || || ||||||||| ||    | |||||||||||||| |||||||    
T  24074588 gagatgaaatataatctgtcaaaaacgtgctaaataaaattaggaggtaaatg-tcattccgagacctctttccggttgaatgttcgaataatatcaaca 24074490  T
Q  108 tcatcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||||| | ||||||||||||||       ||||||||||||||||||||||  || |||||| ||||||||||||||    
T  24074489 tcatcaagtaacttgaatatctccccctcggtgtaacatatcatcaagtcattttaccacacattgttgatcttgttgc 24074411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 25340620 - 25340445
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| |||| ||| |||||||||| ||| |||||||||||||||||||| ||||  |||||||| ||    ||||||||||||||| ||||||||    
T  25340620 gagatgaaacataatctgccaatagtgtgttaa-taaaattaggaggtaaatgcactttctgagacctctttatggtgaatgttcgaataatatcaacat 25340522  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    |||||| |||||| ||||||| |       |||||||||||||||| ||| | ||  ||||||| ||||||||||||    
T  25340521 catcaagtgacttaaatatcttccactgggtgtaacatatcatcaaatcacttaatcacacatcattgatcttgttg 25340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 1296684 - 1296563
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||||||||  |||| ||||||||| ||    ||||| || |||||| || || |||    
T  1296684 agatgaaatataacctgccgatagtgtggtaaataaaataaggaggtaaatggcctttccgagacctctttattgtgaatatttgaataatattaatatc 1296585  T
Q  110 atcaaatgacttgaatatctcc 131  Q
    ||||| ||||||||||||||||    
T  1296584 atcaagtgacttgaatatctcc 1296563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 30621324 - 30621227
Alignment:
Q  33 gtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatcatcaaatgacttgaatatctcc 131  Q
    ||||| |||||||||||||||||||||||  |||| ||||||||| ||  | ||||||||||||||| |||||||||||||| |||||||| |||||||    
T  30621324 gtgtgttaaataaaattaggaggtaaatgtcctttccgagacctctttcga-tgaatgttcgaataatatcaacatcatcaagtgacttgattatctcc 30621227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 32441973 - 32442078
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||| ||| ||||| || |||| ||||| |||||||||||| ||||||||||| |||| ||| ||||| |||  |||||||||||||||| ||||||||    
T  32441973 gagataaaacataacttgccaatggtgtgctaaataaaattaagaggtaaatgccctttccgatacctctttgggatgaatgttcgaataatatcaacat 32442072  T
Q  109 catcaa 114  Q
    ||||||    
T  32442073 catcaa 32442078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 22257696 - 22257738
Alignment:
Q  175 gttgcacaacattcatattctcaatacttgttctatcaaccaa 217  Q
    ||||||||||||||  |||||||||||||||||||||||||||    
T  22257696 gttgcacaacattcgcattctcaatacttgttctatcaaccaa 22257738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 24696135 - 24696100
Alignment:
Q  175 gttgcacaacattcatattctcaatacttgttctat 210  Q
    ||||||||||||||| ||||||||||||||||||||    
T  24696135 gttgcacaacattcacattctcaatacttgttctat 24696100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 260094 - 259917
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||||||| |||||||||| ||| |||||||||||||| |||||||||  ||| ||||||||| |||   ||||||||||||||| |||||  |    
T  260094 gagatgaaatataatctgtcaatagcgtgctaaataaaattaggtggtaaatgccatttccgagacctctttgcggtgaatgttcgaataatatcaatgt 259995  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    |||||| |||||||||||| |||       |||||||||||||||||||||||||| || ||| ||||||||||||||    
T  259994 catcaagtgacttgaatatatcccgctcgatgtaacatatcatcaagtcattgaaccactcattgttgatcttgttgc 259917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 17916 - 17740
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    |||||||||  ||| |||||||||||||| |||||||||||||||| ||||||  ||||  |||||||| |||   ||||||||||||||| ||||||||    
T  17916 gagatgaaacgtaatctgtcaatagtgtgctaaataaaattaggagttaaatgtcctttcggagacctctttgcggtgaatgttcgaataatatcaacat 17817  T
Q  109 catcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttg 178  Q
    || ||| |||||| |||||||||       |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  17816 cagcaagtgacttaaatatctcccgctcgatgtaacgtatcatcaagtcattgaaccacacatcgttgatcttgttg 17740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 214161 - 214337
Alignment:
Q  10 agatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacatc 109  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||| | |||| || |||||| ||  | | ||||||||||||| |||||||||    
T  214161 agatgaaatataacctgccaatagcgtgctaaataaaattaggaggtaaattccctttccgcgacctcttttgagttaatgttcgaataatatcaacatc 214260  T
Q  110 atcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||| ||||| ||||||||||       |||||||||||||||||||||| ||| ||| || ||||||||||||||    
T  214261 atcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttgc 214337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 1572 - 1450
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| ||| | || | ||||| || ||||||||||||||||| ||||||  ||| ||||||||| ||| ||||||||||||||||| ||||||||    
T  1572 gagatgaaacatagcatgccgatagtatgctaaataaaattaggaggcaaatgccatttccgagacctctttgcaatgaatgttcgaataatatcaacat 1473  T
Q  109 catcaaatgacttgaatatctcc 131  Q
    |||||| ||| ||||||||||||    
T  1472 catcaagtgatttgaatatctcc 1450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 1059 - 950
Alignment:
Q  9 gagatgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaacat 108  Q
    ||||||||| |||| ||| |||||||||| |||||||||||||||| ||||||| ||||  |||||||| |||   ||||||||||||||| ||||||||    
T  1059 gagatgaaacataatctggcaatagtgtgctaaataaaattaggagataaatgccctttcggagacctctttgcggtgaatgttcgaataatatcaacat 960  T
Q  109 catcaaatga 118  Q
    ||||||||||    
T  959 catcaaatga 950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 435350 - 435469
Alignment:
Q  12 atgaaatataacctgtcaatagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatga--atgttcgaataaaatcaacatc 109  Q
    ||||||||||| ||| |||||||||| |||||||||||||||||||||||  |||||||||||||| | |   | |  |||||| ||||| ||||||||     
T  435350 atgaaatataatctgacaatagtgtgctaaataaaattaggaggtaaatgtccttttcgagacctcttcgcggttaatatgttctaataatatcaacata 435449  T
Q  110 atcaaatgacttgaatatct 129  Q
    ||||| ||||||||||||||    
T  435450 atcaagtgacttgaatatct 435469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 15991 - 15813
Alignment:
Q  9 gagatgaaatataacctgtcaa-tagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaaca 107  Q
    |||||| ||||| ||||| ||| ||| ||| || ||||||||||||||||||||| |||| |||||  || |||   ||||||||||||||| |||||      
T  15991 gagatggaatattacctggcaaatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatg 15892  T
Q  108 tcatcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||||| ||| ||||||||||||       |||||||||||||||| ||||| ||| || ||| ||| ||||||||||    
T  15891 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgc 15813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 197282 - 197104
Alignment:
Q  9 gagatgaaatataacctgtcaa-tagtgtggtaaataaaattaggaggtaaatgctcttttcgagacctcattgaaatgaatgttcgaataaaatcaaca 107  Q
    |||||| ||||| ||||| ||| ||| ||| || ||||||||||||||||||||| ||||||||||  || |||   |||||||| |||||| |||||      
T  197282 gagatggaatattacctggcaaatagcgtgctagataaaattaggaggtaaatgcccttttcgagatttctttgcggtgaatgtttgaataatatcaatg 197183  T
Q  108 tcatcaaatgacttgaatatctcc-------tgtaacatatcatcaagtcattgaactacacatcgttgatcttgttgc 179  Q
    ||||||| ||| ||||||||||||       |||||||||||||||| ||||| ||| || ||| ||| ||||||||||    
T  197182 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaattcatttaaccactcattgttaatcttgttgc 197104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University