View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_low_4 (Length: 507)
Name: NF18515_low_4
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 93 - 490
Target Start/End: Complemental strand, 29230603 - 29230207
Alignment:
| Q |
93 |
cgtagcgcgcgatttcctcatttctgatataaatataactttcattttctttcacatattctgattttatgaagaaatgaagttattgggttttatacat |
192 |
Q |
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| T |
29230603 |
cgtagcgcgcgatttcctcatttctgatataaatataactttcattttctttcacatattctgattttatgaagaaatgaaattattgggttttatacat |
29230504 |
T |
|
| Q |
193 |
gattatgtttttgggttttaacagagataaaagtgtgattacgaatctgaatggggtatcttcaatttggaagacatggtgttaggcagattattagatt |
292 |
Q |
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| T |
29230503 |
gattatgtttttgggttttaacagagataaaagtgtgattacgaatctgaatggggtatcttcaatttggaagacatggtgttaggcagattattagatt |
29230404 |
T |
|
| Q |
293 |
taaagatgctgttaatgttaatgatagtgttgtggtgaaccgactcatgtatgcatctcaaggattgcgttacaacagaaagcttcaagtcattcttaca |
392 |
Q |
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| T |
29230403 |
taaagatgctgttaatgttaatgatagtgttgtggtgaaccgactcatgtatgcatctcaaggattgcgttacaacaggaagcttcaagtcattcttaca |
29230304 |
T |
|
| Q |
393 |
actgtaagtatctatctcacggttttaaattgcgggccgcggcaacggctgtagtggtgagaactacagttaaatgccgtgttatgttgtgattttcg |
490 |
Q |
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| T |
29230303 |
actgtaagtatctatctcagggttttaaattgc-ggccgcggtaatggctgcagtggtgagaactacagttaaatgccgtgttatgttgtgattttcg |
29230207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 131 - 434
Target Start/End: Complemental strand, 16929351 - 16929033
Alignment:
| Q |
131 |
ctttcattttctttcacatattctgattttatgaagaaatgaagttattgggttttatac------atgattatgtttttgggttttaacagagataaaa |
224 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||| | |||||| |||||| ||||||||||||| |||| |
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| T |
16929351 |
ctttcattttctttcgcatattctgattttatgaagaaatgaaattattggttttgatactgatacaagattatctttttgagttttaacagagagaaaa |
16929252 |
T |
|
| Q |
225 |
gtgtgattac---------------gaatctgaatggggtatcttcaatttggaagacatggtgttaggcagattattagatttaaagatgctgttaatg |
309 |
Q |
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|||| |||| ||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| || | |
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| T |
16929251 |
gtgttgttactgtgcatttgaatccgaatcagaatggggtatcttcaatttggaagatatagtgttaggcagattgttagatttaaagatg-tg-----g |
16929158 |
T |
|
| Q |
310 |
ttaatgatagtgttgtggtgaaccgactcatgtatgcatctcaaggattgcgttacaacagaaagcttcaagtcattcttacaactgtaagtatctatct |
409 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| |
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| T |
16929157 |
ttaatgagggtgttgtggtgaacccactcatgtatgcatctcaaggattgcgttacaatcggaagcttcaagttattcttacaactgtaagtatctatct |
16929058 |
T |
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| Q |
410 |
cacggttttaaattgcgggccgcgg |
434 |
Q |
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| T |
16929057 |
tagggttttaaattgggggccgcgg |
16929033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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