View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_low_5 (Length: 421)
Name: NF18515_low_5
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 38192067 - 38192460
Alignment:
| Q |
16 |
atcacgatgtcactataattttgcc-aaactcaccgctcattcaaacacacatc----gtaaacaaatagaaacttcaattcttgtagttctagatattg |
110 |
Q |
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| T |
38192067 |
atcacaatgtcactgtaattttacccaaactcaccgctcattcaaacacacatcaagtgtaaacaaatagaaacttcaattcttgtagttctagatattg |
38192166 |
T |
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| Q |
111 |
tttgagttaaagattatataaataaactatgcaacactctagctcaaattccaaatacacgatacatatcaaaagctttaaaacaatgattaaataaaaa |
210 |
Q |
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| T |
38192167 |
tttaagttaaa-attatataaataaactatgcaacactctagctcaaattccaaatacatgatacatatcaaaagttttaaaacaatgattaaataaaaa |
38192265 |
T |
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| Q |
211 |
gttgttaagcttaagctgatatatacaaattgtagaagtgagataagcaactggagcttacagtagtgtagaatgcacctccaccataatttgattgccc |
310 |
Q |
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| T |
38192266 |
gttgttaagcttaagctgatatatacaaattgtagaagtgagataagcaagtggagcttacagtagtgtagaatgcacctccaccataatttgattgccc |
38192365 |
T |
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| Q |
311 |
tgaagcttttcctctagtagatccatcctaatattattaacgaaaatacaaaattttatattaaattcaattgatttaatatcactaatcaagtt |
405 |
Q |
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| T |
38192366 |
tgaagcttttcctttagtagatccatcctaatattattaacgaaaatacaaaattttatattgaattcaattgatttaatatcactaatcaagtt |
38192460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 357
Target Start/End: Original strand, 16189207 - 16189297
Alignment:
| Q |
267 |
cttacagtagtgtagaatgcacctccaccataatttgattgccctgaagcttttcctctagtagatccatcctaatattattaacgaaaat |
357 |
Q |
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| T |
16189207 |
cttacagtagtgtagaatgcacctccaccataactggattgtcctgacccttttcctttagctgttccgtcctaatattatcaacaaaaat |
16189297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 22867116 - 22867076
Alignment:
| Q |
22 |
atgtcactataattttgccaaactcaccgctcattcaaaca |
62 |
Q |
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| T |
22867116 |
atgtcactataattttgtcaaactcatcgttcattcaaaca |
22867076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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