View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_low_6 (Length: 413)
Name: NF18515_low_6
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 49904393 - 49904021
Alignment:
| Q |
18 |
agaaggacagaaacttcataccaattcaaaagaagggattatgttcttgtcaaggcttgaacaaaggaaattggggcttctggtaacggtggcaacaatg |
117 |
Q |
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| T |
49904393 |
agaaggacagaaacttcttaccaattcaaaagaagggattatgttcttgtcaaggcttgaacaaaggaaattggggcttctggtaacggtggcaacaatg |
49904294 |
T |
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| Q |
118 |
tctttgggagaagcacctttggaggctaaaaattgaaactttggcaaaatggttttaatggggttgtaaacgatgagcaatggaatcttgcgaatgatgg |
217 |
Q |
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| T |
49904293 |
tctttgggagaagcacctttggaggctaaaaattgaaactttggcaaaatggttttaatggggttgtaaacgatgagcaatggaatcttgcgaatgatgg |
49904194 |
T |
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| Q |
218 |
tttgtatctggtgatcggagaaaccgtgggttttgaaaaaggcgataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttggatgctttgag |
317 |
Q |
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| T |
49904193 |
tttgtatctggtgatcggagaaaccgtgggttttgaaaaaggcgataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttggatgctttgag |
49904094 |
T |
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| Q |
318 |
agcatcttgtggagataaagcgcaattgttggtgaggtaggaaactgggaaagagtgttgatctgaatcagaa |
390 |
Q |
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| T |
49904093 |
agcatcttgtggagataaagcgcaattgttggtgaggtaggaaactgggaaagagtgttgatctgaatcagaa |
49904021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 22 - 386
Target Start/End: Original strand, 49563041 - 49563405
Alignment:
| Q |
22 |
ggacagaaacttcataccaattcaaaagaagggattatgttcttgtcaaggcttgaacaaaggaaattggggcttctggtaacggtggcaacaatgtctt |
121 |
Q |
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| T |
49563041 |
ggacagaaacttcttaccaattcaaaagtagggataatgtgtttgttgaggcttacacgaaggaaacgagggtttctggcaacagtgacgattatgtgtt |
49563140 |
T |
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| Q |
122 |
tgggagaagcacctttggaggctaaaaattgaaactttggcaaaatggttttaatggggttgtaaacgatgagcaatggaatcttgcgaatgatggtttg |
221 |
Q |
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| T |
49563141 |
ctggagaaacgcctttggaagctaaaaattgaagctttggcaaaatggatttgatggggtttgagacgaaaaccaggggatccctgcggatgatggattg |
49563240 |
T |
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| Q |
222 |
tatctggtgatcggagaaaccgtgggttttgaaaaaggcgataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttggatgctttgagagca |
321 |
Q |
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| T |
49563241 |
tatctgatcaatggagaaaccatgggttttgaaaaaggcaataacagtatcgggtttatccggggtgttgaaacgaagtcgtttagatgctttgagagca |
49563340 |
T |
|
| Q |
322 |
tcttgtggagataaagcgcaattgttggtgaggtaggaaactgggaaagagtgttgatctgaatc |
386 |
Q |
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| T |
49563341 |
tcttgtgaagataagccgaaattgttggtgaggtaggaaactgtgaaagatggttgatctgaatc |
49563405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 49559025 - 49559126
Alignment:
| Q |
213 |
gatggtttgtatctggtgatcggagaaaccgtgggttttgaaaaaggcgataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttggatgct |
312 |
Q |
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||||||||||||||| |||| ||||||| |||||||||||||||||| |||||| ||||||| ||||| || ||||| ||||||||| ||||||||||| |
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| T |
49559025 |
gatggtttgtatctgatgattggagaaagcgtgggttttgaaaaaggagataaccgaatcggctttgtgaggggtgtttaaacgaagttgtttggatgct |
49559124 |
T |
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| Q |
313 |
tt |
314 |
Q |
| |
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|| |
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| T |
49559125 |
tt |
49559126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 49558881 - 49559023
Alignment:
| Q |
25 |
cagaaacttcataccaattcaaaagaagggattatgttcttgtcaaggcttgaacaaaggaaattggggcttctggtaacggtggcaacaatgtctttgg |
124 |
Q |
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|||||||| | |||||||||||||| |||||| |||| ||||| |||||| || || ||| ||||||||||| | || |||||||||||||| || |
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| T |
49558881 |
cagaaactccttaccaattcaaaagcagggataatgtgtttgtcgaggcttacacgaacaaaacgagggcttctggtgatggcggcaacaatgtcttggg |
49558980 |
T |
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| Q |
125 |
gagaagcacctttggaggctaaaaattgaaactttggcaaaat |
167 |
Q |
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| T |
49558981 |
gagaagcacctttggagtataaaaattgaatctttggcaaaat |
49559023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 49553411 - 49553371
Alignment:
| Q |
126 |
agaagcacctttggaggctaaaaattgaaactttggcaaaa |
166 |
Q |
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|||||||||||||||| |||||||||||||||||| |||| |
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| T |
49553411 |
agaagcacctttggagagtaaaaattgaaactttggtaaaa |
49553371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 356
Target Start/End: Original strand, 41483645 - 41483739
Alignment:
| Q |
262 |
ataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttggatgctttgagagcatcttgtggagataaagcgcaattgttggtgaggta |
356 |
Q |
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||||| || ||||| |||||||| |||||||||| ||||| |||||||||||| ||||| |||||||| |||||| | ||| |||| |||||||| |
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| T |
41483645 |
ataacagagtcgggattgtcgggtgtgttgaaaccaagtcatttggatgctttaagagcttcttgtggtgataaaccacaagtgttagtgaggta |
41483739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 41483496 - 41483577
Alignment:
| Q |
20 |
aaggacagaaacttcataccaattcaaaagaagggattatgttcttgtcaaggcttgaacaaaggaaattggggcttctggt |
101 |
Q |
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| T |
41483496 |
aaggacataaacttcttaccaattcaaaagcagggataatgtgtttctgaaggcttgaactcaggaaatgggagattctggt |
41483577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 14520157 - 14520119
Alignment:
| Q |
126 |
agaagcacctttggaggctaaaaattgaaactttggcaa |
164 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
14520157 |
agaagcacctttggagagtaaaaattgaaactttggcaa |
14520119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 14476157 - 14476197
Alignment:
| Q |
126 |
agaagcacctttggaggctaaaaattgaaactttggcaaaa |
166 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |
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| T |
14476157 |
agaagcacctttggagagaaaaaattgaaactttggcaaaa |
14476197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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