View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18515_low_7 (Length: 389)
Name: NF18515_low_7
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_low_7 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Complemental strand, 44495102 - 44494722
Alignment:
| Q |
9 |
aatatgaggattaagccaagagctttcatggtttagtttgattactaattacttgtaacccttttttgtgcttcaaatgaagagaaagggggaacactta |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44495102 |
aatatgaggattaagctaagagctttcatggtttagtttgtttactaattacttgtaacccttttttgtgcttcaaatgaagagaaaggaggaacactta |
44495003 |
T |
|
| Q |
109 |
aattgagtagatattccaagttttaattagttatagcattacaaaggccaggggtaatatttaactgcaccgttaaatgttaatacactattctcttttt |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44495002 |
aattgtgtagatattccaagttttaattagttatagcattacaaaggccaggggtaatatttaactgcaccgttaaatgttaatacactattctcttttt |
44494903 |
T |
|
| Q |
209 |
tatattttatactataatttagttaatttttggcatatcatattaacttatgtgggttttatttcctagcaattaagtgaatccatttttaagttgtatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44494902 |
tatattttatactataatttagttaatttttggcatatcatattaacttatgtgggttttatttcctagcaattaagtgaatccatttttaagttgtatg |
44494803 |
T |
|
| Q |
309 |
ataaattttgcttttggcctcttaagaaaattataatattaaaatttaatcgagtattgtttgtttatgttttaacaacat |
389 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44494802 |
ataaattttgcttttagcctcttaagaaaattataatattaaaatttaatcgagtattgtttgtttatgttttaacaacat |
44494722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 44470446 - 44470338
Alignment:
| Q |
17 |
gattaagccaagagctttcatggtttagttt---gattactaattacttgtaacccttttttgtgcttcaaatgaagagaaagggggaacacttaaattg |
113 |
Q |
| |
|
||||||| ||||| |||||||||||||| | | ||| ||||||||||||||| ||||||||||| ||| ||||||||| | ||||||| ||||||| |
|
|
| T |
44470446 |
gattaaggtaagagatttcatggtttagtctttcggttattaattacttgtaacc-ttttttgtgctccaagagaagagaaaagaggaacacctaaattg |
44470348 |
T |
|
| Q |
114 |
agtagatatt |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
44470347 |
tttagatatt |
44470338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University