View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18515_low_8 (Length: 372)
Name: NF18515_low_8
Description: NF18515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18515_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 30653519 - 30653869
Alignment:
| Q |
7 |
tgaaatttctacataaagctttaaagagttttgtctctccaggtcagtctacgtaaagctttatctatccaccttctatgctcttaatgtgacatggcac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30653519 |
tgaaatttctacataaagctttaaagagttttgtctctccaggtcagtctacgtaaagctttatctatccaccttctatgctcttaatgtgacatgacac |
30653618 |
T |
|
| Q |
107 |
tacaaacatttctacatatcttgtatttaaaagttggttaatatattactcattcccatgctggaaatgctgccacgcgtatgtaaccatgaaattatat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30653619 |
tacaaacatttctacatatcttgtatttaaaagttggttaatatattactcattcccatgctggaaatgctgccacacgtatgtaaccatgaaattatat |
30653718 |
T |
|
| Q |
207 |
tttagtttagttttattgagttataaaaaatgttaaattgataactatgagccttgcataatcgataatttatagctgaattgaattgattaccatgaaa |
306 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30653719 |
tttagtttagttttattgagttatggaaaatgttaaattgataactatgagccttgcataatcgataatttatagctgaattgaattgattaccatgaaa |
30653818 |
T |
|
| Q |
307 |
tgctgccacacgtgtaacttgaaataaatattatgtattataggtttatgg |
357 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
30653819 |
tgctgccacacgtgtaactgtaaataaatattatgtactataggtttatgg |
30653869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 30653476 - 30653512
Alignment:
| Q |
7 |
tgaaatttctacataaagctttaaagagttttgtctc |
43 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
30653476 |
tgaaatttctacataaagctttaaagagttttgtctc |
30653512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 30653441 - 30653469
Alignment:
| Q |
15 |
ctacataaagctttaaagagttttgtctc |
43 |
Q |
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| T |
30653441 |
ctacataaagctttaaagagttttgtctc |
30653469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 2551730 - 2551605
Alignment:
| Q |
21 |
aaagctttaaagagttttgtctctccaggtcagtctacgtaaagctttatctatccaccttctatgctcttaatgtgacatggcactacaaacatttcta |
120 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||| |||| || |||||| ||||||| ||||| | ||||||||| |
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| T |
2551730 |
aaagctttaaagagttttggctctccaggtcagtctacataaagcttcatctctctaccttc-----------tgtgacacggcacaatgaacatttctg |
2551642 |
T |
|
| Q |
121 |
catatcttgtatttaaaagttggttaatatattactc |
157 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
2551641 |
catatcttgtatttaaaatttggttaatatattactc |
2551605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 8354414 - 8354334
Alignment:
| Q |
198 |
aaattatattttagtttagttttattgagttat--aaaa---aatgttaaattgataactatgagccttgcataatcgata |
273 |
Q |
| |
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||||||| || ||||| |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8354414 |
aaattatcttgtagttgagttttcttgagttatggaaaatataatgttaaattgataactatgagccttgcataatcgata |
8354334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 24846053 - 24846148
Alignment:
| Q |
198 |
aaattatattttagtttagttttattgagttataaaaaatgttaaattgataactatgagccttgcataatcgataatttatagctgaattgaatt |
293 |
Q |
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||||||| || ||||| |||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||| || |||| | ||||||||| |
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| T |
24846053 |
aaattatcttgtagttgagttttctggagttatggaaaatgttaaattgataactatgaaccttgcataatcgatatttgatagtttaattgaatt |
24846148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 15292388 - 15292507
Alignment:
| Q |
222 |
ttgagttataaaaaatgttaaattgataactat----gagccttgcataatcgataatttatagctgaattgaattgattaccatgaaatgctgccacac |
317 |
Q |
| |
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||||||||| || |||| |||||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| | || |
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| T |
15292388 |
ttgagttatggaatatgtcaaattgataactatatatgagccttgcataatcaata-tttatagttgaattgaattgattaccatgaaatgctatcgcat |
15292486 |
T |
|
| Q |
318 |
gtgtaacttgaaataaatatt |
338 |
Q |
| |
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|||||| | ||||||||||| |
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| T |
15292487 |
gtgtaattgtaaataaatatt |
15292507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 15472757 - 15472876
Alignment:
| Q |
222 |
ttgagttataaaaaatgttaaattgataactat----gagccttgcataatcgataatttatagctgaattgaattgattaccatgaaatgctgccacac |
317 |
Q |
| |
|
||||||||| || |||| |||||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| | || |
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| T |
15472757 |
ttgagttatggaatatgtcaaattgataactatatatgagccttgcataatcaata-tttatagttgaattgaattgattaccatgaaatgctatcgcat |
15472855 |
T |
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| Q |
318 |
gtgtaacttgaaataaatatt |
338 |
Q |
| |
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|||||| | ||||||||||| |
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| T |
15472856 |
gtgtaattgtaaataaatatt |
15472876 |
T |
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