View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18516_high_5 (Length: 358)
Name: NF18516_high_5
Description: NF18516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18516_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 27523596 - 27523917
Alignment:
| Q |
15 |
aaaatgtggtcacaagactc------tatggttaactgaaatcttttagagtgatagaaagaggtgtgcagattattcttgtttggattgctaatttcct |
108 |
Q |
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| T |
27523596 |
aaaatgtggtcacaagactcaatatatatggttaactgaaatcttttagagtgattgaaagaggtgtgcagattattcttgtttggattgctaatttcct |
27523695 |
T |
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| Q |
109 |
tcttttttacgggatgttattccttaattcattcaaatatttgtttatgttgaaaattctaccttcaatcgtggcttcctaattgcggcatttggattgt |
208 |
Q |
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| T |
27523696 |
tcttttttacgggatgttattccttaattctttcaaatatttgtttatgttgaaaattctaccttcaatcgtggcttcctaattgcggcatttggattgt |
27523795 |
T |
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| Q |
209 |
tcagaatctctatttctctattatttctacctcctgtcatggtgaaaagaacttggtgatgacaacttataatttgtaggcataaaaataatgaatttca |
308 |
Q |
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| T |
27523796 |
tcagaatctctatttctctattatttctacctcctgtcatggtgaaaagaacttggtgataacaacttataatttgtaggcataaaaataatgaatttca |
27523895 |
T |
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| Q |
309 |
attgcaaatgttggtaaataaa |
330 |
Q |
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| T |
27523896 |
attgcaaatgttggtaaataaa |
27523917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 12858268 - 12858395
Alignment:
| Q |
87 |
ttgtttggattgctaatttccttcttttttacgggatgttattccttaattcattcaaatatttgtttatgttgaaaattctaccttcaatcgtggcttc |
186 |
Q |
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| T |
12858268 |
ttgtttgaattgctaatttccatcttttata--ggatgttatttcttaattctttcaaatatttgtttatgttgaaaattctaccatc-attgtggcctc |
12858364 |
T |
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| Q |
187 |
ctaattgcggcatttggattgttcagaatct |
217 |
Q |
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| T |
12858365 |
ctaattgcgacatttggattgttcagaatct |
12858395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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