View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18516_high_6 (Length: 297)
Name: NF18516_high_6
Description: NF18516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18516_high_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 31505007 - 31505294
Alignment:
| Q |
10 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggtttgttctgtattttcactttaatggatgttccta |
109 |
Q |
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| T |
31505007 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggtttgttctgtattttcactttaatggatgttccta |
31505106 |
T |
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| Q |
110 |
tttgttcagcctgttacgttataatcttatgcaatagtttgcgatattattttgtgtatttaaagatgttgccagtcttgtttcttatattatgtttact |
209 |
Q |
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| T |
31505107 |
tttgttcagcctgttacgttataatcttatgcaatagtttgcgatattattttgtgtatttaaagatgttgccagtcttgtttcttatattatgtttact |
31505206 |
T |
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| Q |
210 |
gtaatctctattggagttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggttcgatagtgcttttatt |
297 |
Q |
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| T |
31505207 |
gtaatctctattggacttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggttcgatagtgcttttatt |
31505294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 27609266 - 27608995
Alignment:
| Q |
10 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggtttgttctgtattttcactttaatggatgttccta |
109 |
Q |
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| T |
27609266 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggttttttttgtactttcactttaatagatgttccta |
27609167 |
T |
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| Q |
110 |
tttgttcagcctgttacgttataatcttatgcaatagtttgcgatattattttgtgtatttaaagatgttgccagtcttgtttcttatattatgtttact |
209 |
Q |
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| T |
27609166 |
tttgttaagcatgttacattataatcttatacaatagtttgcgctattattttatttatttaaagatgttgccagtcttgtttcttatattatgtttact |
27609067 |
T |
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| Q |
210 |
gtaatctctattggagttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggtt |
281 |
Q |
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| T |
27609066 |
gtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataactgggtt |
27608995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 34497736 - 34497464
Alignment:
| Q |
10 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggtttgttctgtattttcactttaatggatgttccta |
109 |
Q |
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| T |
34497736 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggttttttttgtactttcactttaatagatgttccta |
34497637 |
T |
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| Q |
110 |
tttgttcagcctgttacgttataatcttatgcaatagtttgcgatattattttgtgtatttaaaga---tgttgccagtcttgtttcttatattatgttt |
206 |
Q |
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| T |
34497636 |
tttgttaagcatgttacattataatcttat-caatagtttgtgctattatttttt-tatttaaagaagatgttgccagtcttgtttcttatattatgttt |
34497539 |
T |
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| Q |
207 |
actgtaatctctattggagttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggtt |
281 |
Q |
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| T |
34497538 |
actgtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataactgggtt |
34497464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 51686566 - 51686502
Alignment:
| Q |
11 |
gatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggt |
75 |
Q |
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| T |
51686566 |
gatgaaaaacaatgtgcagaacatgtaatgctggtcgatttggggagaaatgatgttggaaaggt |
51686502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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