View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18516_high_7 (Length: 271)

Name: NF18516_high_7
Description: NF18516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18516_high_7
NF18516_high_7
[»] chr3 (15 HSPs)
chr3 (17-254)||(52744640-52744875)
chr3 (125-247)||(46048958-46049081)
chr3 (157-216)||(35539696-35539755)
chr3 (124-218)||(36619233-36619326)
chr3 (143-228)||(13755099-13755184)
chr3 (143-228)||(13768500-13768585)
chr3 (127-218)||(40242141-40242232)
chr3 (144-235)||(49108997-49109088)
chr3 (164-247)||(55222604-55222687)
chr3 (125-227)||(45603382-45603484)
chr3 (157-207)||(46006046-46006096)
chr3 (154-218)||(44110934-44110998)
chr3 (157-237)||(54425533-54425613)
chr3 (169-236)||(26085176-26085242)
chr3 (168-225)||(52393759-52393816)
[»] chr2 (16 HSPs)
chr2 (132-247)||(11922025-11922140)
chr2 (164-229)||(31050054-31050119)
chr2 (143-215)||(3668931-3669003)
chr2 (144-216)||(9583235-9583307)
chr2 (143-247)||(15269289-15269393)
chr2 (164-252)||(36267096-36267184)
chr2 (145-218)||(26312565-26312638)
chr2 (125-206)||(34375122-34375203)
chr2 (145-247)||(14772853-14772955)
chr2 (147-215)||(6710831-6710899)
chr2 (167-243)||(14332021-14332097)
chr2 (168-228)||(16117858-16117918)
chr2 (133-189)||(30465344-30465400)
chr2 (128-216)||(37347795-37347883)
chr2 (173-227)||(6459201-6459255)
chr2 (146-216)||(11916028-11916098)
[»] chr5 (10 HSPs)
chr5 (125-247)||(41520789-41520911)
chr5 (157-252)||(2375654-2375743)
chr5 (125-184)||(35463217-35463277)
chr5 (147-243)||(12593222-12593318)
chr5 (151-252)||(11200495-11200596)
chr5 (147-215)||(8571950-8572018)
chr5 (144-215)||(1309722-1309793)
chr5 (136-218)||(8234236-8234318)
chr5 (165-233)||(22579788-22579856)
chr5 (168-216)||(31066260-31066308)
[»] chr8 (22 HSPs)
chr8 (124-252)||(13628959-13629087)
chr8 (124-252)||(13729371-13729499)
chr8 (124-247)||(7288296-7288419)
chr8 (133-236)||(36317053-36317156)
chr8 (149-252)||(37673679-37673782)
chr8 (125-242)||(38937867-38937984)
chr8 (125-216)||(6519002-6519093)
chr8 (164-215)||(18806528-18806579)
chr8 (146-216)||(31226428-31226498)
chr8 (157-230)||(13079889-13079962)
chr8 (176-225)||(42692701-42692750)
chr8 (143-187)||(2603060-2603104)
chr8 (124-216)||(9604460-9604552)
chr8 (144-243)||(5535725-5535824)
chr8 (144-243)||(9135095-9135193)
chr8 (157-215)||(35973345-35973403)
chr8 (169-226)||(14426069-14426126)
chr8 (145-194)||(28557341-28557390)
chr8 (144-213)||(31128518-31128587)
chr8 (143-216)||(35468425-35468497)
chr8 (133-201)||(1155110-1155178)
chr8 (162-218)||(4797189-4797245)
[»] chr4 (22 HSPs)
chr4 (143-236)||(35308923-35309016)
chr4 (144-216)||(2396392-2396464)
chr4 (144-252)||(35331906-35332014)
chr4 (125-243)||(12447493-12447610)
chr4 (145-228)||(10180560-10180643)
chr4 (164-215)||(23607467-23607518)
chr4 (125-215)||(42426850-42426940)
chr4 (144-247)||(52199896-52199999)
chr4 (166-215)||(8489456-8489505)
chr4 (151-216)||(39055262-39055327)
chr4 (170-218)||(28897710-28897758)
chr4 (165-213)||(45833962-45834010)
chr4 (143-251)||(18743207-18743312)
chr4 (164-247)||(28909407-28909490)
chr4 (125-235)||(49211102-49211213)
chr4 (133-187)||(822367-822421)
chr4 (165-247)||(8825074-8825156)
chr4 (150-252)||(30865975-30866076)
chr4 (133-215)||(35144470-35144552)
chr4 (125-183)||(53096599-53096657)
chr4 (179-247)||(8892342-8892410)
chr4 (144-212)||(23359195-23359263)
[»] chr6 (9 HSPs)
chr6 (144-243)||(33755833-33755932)
chr6 (133-246)||(7693850-7693964)
chr6 (157-247)||(32658353-32658443)
chr6 (141-232)||(3705662-3705753)
chr6 (143-204)||(3543292-3543353)
chr6 (127-208)||(31743527-31743608)
chr6 (164-216)||(387839-387891)
chr6 (133-247)||(32977299-32977414)
chr6 (172-246)||(5002297-5002371)
[»] chr1 (16 HSPs)
chr1 (133-227)||(27544454-27544548)
chr1 (164-246)||(47364436-47364517)
chr1 (144-252)||(13984131-13984239)
chr1 (145-245)||(36166986-36167085)
chr1 (148-244)||(38902061-38902157)
chr1 (128-216)||(51504491-51504579)
chr1 (145-252)||(43822870-43822977)
chr1 (143-218)||(52353745-52353820)
chr1 (157-243)||(42831752-42831838)
chr1 (148-252)||(25813833-25813937)
chr1 (144-216)||(32451717-32451789)
chr1 (144-247)||(49003292-49003394)
chr1 (164-218)||(15726900-15726954)
chr1 (168-218)||(33326186-33326236)
chr1 (164-237)||(37524138-37524211)
chr1 (168-216)||(47783612-47783660)
[»] chr7 (16 HSPs)
chr7 (133-218)||(38224060-38224145)
chr7 (143-252)||(46747955-46748064)
chr7 (144-236)||(43302057-43302149)
chr7 (125-218)||(47841378-47841471)
chr7 (180-251)||(39853896-39853967)
chr7 (130-228)||(4958321-4958419)
chr7 (145-215)||(30859666-30859736)
chr7 (146-243)||(23801763-23801860)
chr7 (129-194)||(31330473-31330538)
chr7 (144-245)||(36657818-36657919)
chr7 (165-236)||(29914340-29914412)
chr7 (157-236)||(31322251-31322330)
chr7 (134-215)||(5513805-5513887)
chr7 (125-185)||(19987234-19987294)
chr7 (157-189)||(27334478-27334510)
chr7 (143-227)||(36656556-36656640)
[»] scaffold0036 (1 HSPs)
scaffold0036 (144-227)||(63644-63727)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 52744875 - 52744640
Alignment:
Q  17 tatgtatataaatatcaattgaagatcagacaactagataattttaagtaattaaagttagtgttgaaaataacacgcacacacatatcgtaaggagact 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  52744875 tatgtatataaatatcaattgaagatcacacaactagataattttaagcaattaaagttagtgttgaaaataacacgcacaca--tatcgtaaggagatt 52744778  T
Q  117 attataaatgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52744777 attataaatgaaatgttgggttgaaaggattgagtacttgttaggtgttactattaaaaaattataaataagtaatgtgtacacgtgagactcatttaag 52744678  T
Q  217 tagtaaaaaatgaatgtctccgttgtggatgttctagg 254  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  52744677 tagtaaaaaatgaatgtctccattgtggatgttctagg 52744640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 46048958 - 46049081
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaa-aattataaataagtaatgtttacacgtgagactcatttaagtagtaaa 223  Q
    ||||||| || |||| | ||||||  ||||| |||||| ||| |||||||| |||||||||| ||||||||||||| ||||||| |||||||||| | ||    
T  46048958 tgagatgctgagttggagggattggatacttattaggtactaatattaaaaaaattataaatgagtaatgtttacatgtgagacccatttaagtacttaa 46049057  T
Q  224 aaatgaatgtctccgttgtggatg 247  Q
    ||||| | |||||| |||||||||    
T  46049058 aaatggaggtctccattgtggatg 46049081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 35539696 - 35539755
Alignment:
Q  157 ttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    |||||| |||||||||||||||||||||||| | |||| |||||||||||||||||||||    
T  35539696 ttaggtactactattaaaaaattataaataaatgatgtgtacacgtgagactcatttaag 35539755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 36619233 - 36619326
Alignment:
Q  124 atgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    ||||||||||||||||   ||||||| ||||| |||| |  ||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||    
T  36619233 atgagatgttgggttggggggattgaatacttattagata-tactattaaaaaattataaatcagtgatgtgtacacgtgagacccatttaagta 36619326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 13755184 - 13755099
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatg 228  Q
    ||||||||| ||| ||| || |||||||||||||||||||||| ||| |||| |||||||| ||| | |||||||| |||||||||    
T  13755184 ggattgagttcttattaagtactactattaaaaaattataaatgagtgatgtgtacacgtgggacccgtttaagtactaaaaaatg 13755099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 13768585 - 13768500
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatg 228  Q
    ||||||||| ||| ||| || |||||||||||||||||||||| ||| |||| |||||||| ||| | |||||||| |||||||||    
T  13768585 ggattgagttcttattaagtactactattaaaaaattataaatgagtgatgtgtacacgtgggacccgtttaagtactaaaaaatg 13768500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 40242232 - 40242141
Alignment:
Q  127 agatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    ||||||||| ||  ||| ||||||| ||| ||||||  ||||||||||||||||||||||||| || | |||||||||||| ||||| ||||    
T  40242232 agatgttggtttagaagaattgagtgcttattaggtattactattaaaaaattataaataagtgatatatacacgtgagacacatttgagta 40242141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 49109088 - 49108997
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtct 235  Q
    |||||||| ||| |||||| |||||| | |||| |||||||||| |||| | ||| ||||||||||||||| |||  |||||||||||||||    
T  49109088 gattgagtgcttattaggtactactaatgaaaagttataaataaataatttgtacgcgtgagactcatttacgtaaaaaaaaatgaatgtct 49108997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 55222604 - 55222687
Alignment:
Q  164 ctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatg 247  Q
    |||||||||||||||||||||| | | || | |||||||||||| |||||||| |   ||||||||||||||||  ||||||||    
T  55222604 ctactattaaaaaattataaatgactgatatgtacacgtgagacccatttaagaacctaaaaatgaatgtctccaatgtggatg 55222687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 45603484 - 45603382
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaa 224  Q
    ||||||||||| || || |||||||||  || ||| || ||| ||||| |||||||||||| | | |||| || ||||||||||||||||||||  ||||    
T  45603484 tgagatgttggatttaagggattgagtgtttattaagtactattattataaaattataaatgaatgatgtgtatacgtgagactcatttaagtaccaaaa 45603385  T
Q  225 aat 227  Q
    |||    
T  45603384 aat 45603382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 46006096 - 46006046
Alignment:
Q  157 ttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagac 207  Q
    |||||| |||||||||||||||||||||| ||| |||| ||||||||||||    
T  46006096 ttaggtactactattaaaaaattataaatgagtgatgtgtacacgtgagac 46006046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 44110934 - 44110998
Alignment:
Q  154 ttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    |||||||||  ||||||||||||||||||||| | | |||| |||||||| ||| ||||||||||    
T  44110934 ttgttaggtaatactattaaaaaattataaatgaattatgtgtacacgtgtgacccatttaagta 44110998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 54425533 - 54425613
Alignment:
Q  157 ttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctcc 237  Q
    |||||| |||||||||||||| ||||||| | |||| | |||||||| ||| ||||||| || | |||||||| |||||||    
T  54425533 ttaggtactactattaaaaaactataaatgaataatatgtacacgtgtgacccatttaaatacttaaaaatgagtgtctcc 54425613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 26085176 - 26085242
Alignment:
Q  169 attaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctc 236  Q
    ||||||||||||||||| | | |||| |||||||||||| ||||||||||   |||||||||||||||    
T  26085176 attaaaaaattataaatgaatgatgtgtacacgtgagacccatttaagta-ccaaaaatgaatgtctc 26085242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 52393759 - 52393816
Alignment:
Q  168 tattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaa 225  Q
    |||||||||||||||||||| | |||| | ||||||| |||||||||| || ||||||    
T  52393759 tattaaaaaattataaataaatgatgtatgcacgtgatactcatttaaatactaaaaa 52393816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 11922025 - 11922140
Alignment:
Q  132 ttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaat 231  Q
    |||||||| | | ||||||| ||| |||||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||| | |||||||| |    
T  11922025 ttgggttggaggaattgagtgctttttaggtactactattaaaaaattataaatgagtaatgtgtacacgtgagacccatttaagtaattaaaaatgagt 11922124  T
Q  232 gtctccgttgtggatg 247  Q
    |||||| |||||||||    
T  11922125 gtctccattgtggatg 11922140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 31050119 - 31050054
Alignment:
Q  164 ctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatga 229  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||||||||||| | ||||||||    
T  31050119 ctactattaaaaaattataaataagtgatgtgtacatgtgagactcatttaagtactcaaaaatga 31050054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 3668931 - 3669003
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    ||||||||||||| |||  | |||||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  3668931 ggattgagtacttattaattactactattaaaaaattataaattagtaatatatacacgtgagactcatttaa 3669003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 9583235 - 9583307
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    |||||||| ||| |||| | |||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  9583235 gattgagtgcttattagatactactattaaaaaattataaataagtgatgcgtacacgtgagactcatttaag 9583307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 15269289 - 15269393
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgt 242  Q
    ||||||| ||||| |||||  |||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||   |||||||  | ||||| ||||    
T  15269289 ggattgaatacttattaggcactactattaaaaaattataaatgagtaatgtgtacatgtgagacccatttaagtaccgaaaaatgggtatctccattgt 15269388  T
Q  243 ggatg 247  Q
    |||||    
T  15269389 ggatg 15269393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 36267096 - 36267184
Alignment:
Q  164 ctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatgttcta 252  Q
    |||||||||||||||||||||| ||| |||| |||||||| |||  | |||||||  ||||||||||||||| | ||||||||| ||||    
T  36267096 ctactattaaaaaattataaatgagtgatgtgtacacgtgcgaccaagttaagtaacaaaaaatgaatgtcttcattgtggatgctcta 36267184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 26312565 - 26312638
Alignment:
Q  145 attgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    ||||||| ||| |||||| |||||||||||||||||||||| ||| |||| |||||||| ||| | ||||||||    
T  26312565 attgagtgcttattaggtactactattaaaaaattataaatgagtgatgtgtacacgtgtgacccgtttaagta 26312638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 34375122 - 34375203
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgaga 206  Q
    |||||| || ||||| | ||||||| | ||| |||||| |||||||||||||||||||||||||| |||| |||| ||||||    
T  34375122 tgagatcttaggttggagggattgaattcttattaggtactactattaaaaaattataaataagtgatgtgtacatgtgaga 34375203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 14772955 - 14772853
Alignment:
Q  145 attgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtgg 244  Q
    ||||||||||| |||||| ||| | |||||||||||||||| | | |||| ||| |||||||| |||||||| | | |||||||  ||||||| |||| |    
T  14772955 attgagtacttattaggtactattgttaaaaaattataaatgaatgatgtgtacgcgtgagacccatttaagaactcaaaaatgggtgtctccattgtag 14772856  T
Q  245 atg 247  Q
    |||    
T  14772855 atg 14772853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 6710899 - 6710831
Alignment:
Q  147 tgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    ||||| ||| |||| | |||||||||||||||||||||| ||| || | |||||||||||| |||||||    
T  6710899 tgagtgcttattagatactactattaaaaaattataaatgagtgatctgtacacgtgagacccatttaa 6710831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 14332097 - 14332021
Alignment:
Q  167 ctattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||| |||||||||||||| ||| |||| |||||||||||  |||||||||   ||||||||| | |||||||||||    
T  14332097 ctatcaaaaaattataaatgagtgatgtgtacacgtgagatccatttaagttccaaaaaatgagtatctccgttgtg 14332021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 16117918 - 16117858
Alignment:
Q  168 tattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatg 228  Q
    |||||||||||||||||| ||| || | |||||||||||| ||||||| || |||||||||    
T  16117918 tattaaaaaattataaatgagtgatatgtacacgtgagacccatttaaatactaaaaaatg 16117858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 30465344 - 30465400
Alignment:
Q  133 tgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagt 189  Q
    ||||||||| ||||||| | ||| |||| | ||||||||||||||||||||||||||    
T  30465344 tgggttgaagggattgaattcttattagatactactattaaaaaattataaataagt 30465400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 37347883 - 37347795
Alignment:
Q  128 gatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    |||| ||||||| | ||||||| | ||| |||| |  ||||||||||||||||||||||| | |||| |||||||||||  ||||||||    
T  37347883 gatgctgggttggagggattgaattcttattagatattactattaaaaaattataaataaatgatgtgtacacgtgagatccatttaag 37347795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 6459201 - 6459255
Alignment:
Q  173 aaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaat 227  Q
    ||||||||||||| ||| |||| ||||| |||||||||||||||||  |||||||    
T  6459201 aaaaattataaatcagtgatgtgtacacatgagactcatttaagtatcaaaaaat 6459255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 11916028 - 11916098
Alignment:
Q  146 ttgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    |||||||| | |||||| ||| ||||||||||||||||| ||||||||| | || ||||||| | ||||||    
T  11916028 ttgagtacctattaggtactattattaaaaaattataaaaaagtaatgtgtccatgtgagacccctttaag 11916098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 41520911 - 41520789
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaa 224  Q
    ||||||| ||||||| | ||||||||| ||| |||||| | |||||||||||||||||||||||| |||| ||||||||| || |||||||| |  ||||    
T  41520911 tgagatgctgggttggagggattgagttcttattaggtaccactattaaaaaattataaataagtgatgtgtacacgtgaaacccatttaagaaccaaaa 41520812  T
Q  225 aatgaatgtctccgttgtggatg 247  Q
    |||| |||||||| |||||||||    
T  41520811 aatggatgtctccattgtggatg 41520789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 2375654 - 2375743
Alignment:
Q  157 ttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatgttcta 252  Q
    |||||| |||||||||||||||||||||||||| |      ||||||||||||||||||| | ||||||||| |||||||| ||||| ||||||||    
T  2375654 ttaggtactactattaaaaaattataaataagtga------cacgtgagactcatttaagaactaaaaaatggatgtctccattgtgaatgttcta 2375743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 35463277 - 35463217
Alignment:
Q  125 tgagatgttgggtt-gaaaggattgagtacttgttaggtgctactattaaaaaattataaa 184  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||    
T  35463277 tgagatgttgggtttgaaaggattgagtacttattaggtactactattaaaaaattataaa 35463217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 12593222 - 12593318
Alignment:
Q  147 tgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    ||||||||| |||| | ||||||||||||| |||||||| ||| |||| |||||||| |||  |||||||||   |||||| ||||| |||||||||    
T  12593222 tgagtacttattagatactactattaaaaagttataaatgagtgatgtgtacacgtgtgaccaatttaagtatccaaaaattaatgtttccgttgtg 12593318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 11200495 - 11200596
Alignment:
Q  151 tacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatgttc 250  Q
    ||||| ||||||  || |||||||||||||||||| ||| |||| ||| |||||| |||||||||| |   |||||||| ||||| | |||| |||||||    
T  11200495 tacttattaggtattattattaaaaaattataaatgagtgatgtgtacgcgtgagtctcatttaagcatccaaaaatgagtgtcttcattgtagatgttc 11200594  T
Q  251 ta 252  Q
    ||    
T  11200595 ta 11200596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 8572018 - 8571950
Alignment:
Q  147 tgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    ||||| |||||||| | ||  |||||||||||||||||||| | |||| |||||||||||| |||||||    
T  8572018 tgagtgcttgttagatactcgtattaaaaaattataaataattcatgtgtacacgtgagacccatttaa 8571950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 1309793 - 1309722
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    |||||||| ||| |||| | ||| |||||||||||||||||||| | || | |||||||| |||||||||||    
T  1309793 gattgagtgcttattagatactattattaaaaaattataaataaatgatatatacacgtgggactcatttaa 1309722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 8234236 - 8234318
Alignment:
Q  136 gttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    ||||||| ||||||| |||| |||| |  ||||||||||||||||||||| | |||  | |||| ||||||||||| ||||||    
T  8234236 gttgaaaagattgagaacttattagatattactattaaaaaattataaatgaataacctatacaagtgagactcatgtaagta 8234318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 22579788 - 22579856
Alignment:
Q  165 tactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgt 233  Q
    ||||||||||||||||||||| ||| || | |  |||||||| ||||||||||| |  |||||||||||    
T  22579788 tactattaaaaaattataaatgagtgatatgtgtacgtgagattcatttaagtactttaaaatgaatgt 22579856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 31066308 - 31066260
Alignment:
Q  168 tattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    |||||||||||||||||||| |||||| |||| || | |||||||||||    
T  31066308 tattaaaaaattataaataaataatgtgtacatgtcaaactcatttaag 31066260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 13629087 - 13628959
Alignment:
Q  124 atgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaa 223  Q
    |||||||||||||||| | ||||||| ||||| |||| | |||||||||||||||||||||| | | |||| |||| ||||||| |||||||| | | ||    
T  13629087 atgagatgttgggttggagggattgactacttattagatactactattaaaaaattataaatgaatgatgtgtacatgtgagacccatttaagaactcaa 13628988  T
Q  224 aaatgaatgtctccgttgtggatgttcta 252  Q
    ||||| | |||||| ||||||||| ||||    
T  13628987 aaatggaggtctccattgtggatgctcta 13628959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 13729499 - 13729371
Alignment:
Q  124 atgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaa 223  Q
    |||||||||||||||| | ||||||| ||||| |||| | |||||||||||||||||||||| | | |||| |||| ||||||| |||||||| | | ||    
T  13729499 atgagatgttgggttggagggattgactacttattagatactactattaaaaaattataaatgaatgatgtgtacatgtgagacccatttaagaactcaa 13729400  T
Q  224 aaatgaatgtctccgttgtggatgttcta 252  Q
    ||||| | |||||| ||||||||| ||||    
T  13729399 aaatggaggtctccattgtggatgctcta 13729371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 7288296 - 7288419
Alignment:
Q  124 atgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaa 223  Q
    |||||||| ||||||| | ||||| ||| ||| |||| | ||||||| ||| |||||||||||||| || | || || |||||||||||||||||  |||    
T  7288296 atgagatgctgggttggagggattaagttcttattagatactactatgaaacaattataaataagtgatatctatacatgagactcatttaagtataaaa 7288395  T
Q  224 aaatgaatgtctccgttgtggatg 247  Q
    ||| | |||||||  |||||||||    
T  7288396 aaacggatgtctctattgtggatg 7288419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 36317053 - 36317156
Alignment:
Q  133 tgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatg 232  Q
    |||||||||| ||| || | ||| |||||| |||| ||| || |||||||||||| | |||| |||||||||||||||||||||||   || ||||||||    
T  36317053 tgggttgaaaagatcgattgcttattaggtactacgattgaataattataaataaatgatgtgtacacgtgagactcatttaagtaaccaacaatgaatg 36317152  T
Q  233 tctc 236  Q
    ||||    
T  36317153 tctc 36317156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 37673782 - 37673679
Alignment:
Q  149 agtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatgt 248  Q
    ||||||| |||||| |||||||||||||||||||||| ||| |||| ||| ||||| ||  ||||||| |   ||||||| |||||||| |||||||||     
T  37673782 agtacttattaggtactactattaaaaaattataaatgagtgatgtgtacgcgtgacacatatttaagaacccaaaaatggatgtctccattgtggatgc 37673683  T
Q  249 tcta 252  Q
    ||||    
T  37673682 tcta 37673679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 38937867 - 38937984
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaa 224  Q
    |||||||||| |||| | ||||||||| ||| |||||||  |||||||||||||||||||||||| || | ||||| | |||  |||||||  | | |||    
T  38937867 tgagatgttgtgttggagggattgagttcttattaggtgtcactattaaaaaattataaataagtgatatgtacacataagatccatttaaaaattcaaa 38937966  T
Q  225 aatgaatgtctccgttgt 242  Q
    ||||| ||||||| ||||    
T  38937967 aatgagtgtctccattgt 38937984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 6519093 - 6519002
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    ||||||| ||||||| |  |||||| | ||| |||||| |||||||||||||||||||||||||| || | | |||||| ||| ||||||||    
T  6519093 tgagatgctgggttggagagattgaattcttattaggtactactattaaaaaattataaataagtgatatgtgcacgtgggacccatttaag 6519002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 18806579 - 18806528
Alignment:
Q  164 ctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    |||||||||||||||||||||||||| |||| ||||||||| || |||||||    
T  18806579 ctactattaaaaaattataaataagtgatgtgtacacgtgaaacccatttaa 18806528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 31226498 - 31226428
Alignment:
Q  146 ttgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    ||||||| || |||||| |||||||||||||||||||||| ||| |||| |||| |||| || ||||||||    
T  31226498 ttgagtatttattaggtactactattaaaaaattataaatgagtgatgtgtacatgtgacacccatttaag 31226428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 13079889 - 13079962
Alignment:
Q  157 ttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaa 230  Q
    |||||| |||||||| ||||||||||||| ||| |  | ||||||||||||| |||||||||  ||||||||||    
T  13079889 ttaggtactactattcaaaaattataaatgagtgaaatgtacacgtgagacttatttaagtatcaaaaaatgaa 13079962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 42692701 - 42692750
Alignment:
Q  176 aattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaa 225  Q
    |||||||||||| | |||| ||||||||||||||||||||||| ||||||    
T  42692701 aattataaataaatgatgtatacacgtgagactcatttaagtactaaaaa 42692750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 2603104 - 2603060
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataa 187  Q
    ||||||||||||| |||| | ||||||||||||||||||||||||    
T  2603104 ggattgagtacttattagatactactattaaaaaattataaataa 2603060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 9604552 - 9604460
Alignment:
Q  124 atgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    |||||||| ||||||| | ||||||||| ||| |||| | ||| |||||||||||||||||| ||| |||  || |||||||||  |||||||    
T  9604552 atgagatgctgggttggatggattgagttcttattagatactattattaaaaaattataaattagtgatgcgtagacgtgagacctatttaag 9604460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 5535824 - 5535725
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||||||| ||| | |||| ||| |||||||||||||||||| ||| |||| ||||||||  | ||||||||  |   |||||||||||||||| |||||    
T  5535824 gattgagtgcttataaggtactaatattaaaaaattataaatgagtgatgtgtacacgtggaattcatttaaaaacccaaaaatgaatgtctccattgtg 5535725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 9135095 - 9135193
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||||||| ||| |||||| ||||||||||||| || ||||| ||| || | |||||||||||| |||||||| |   |||||||| ||||||| |||||    
T  9135095 gattgagtgcttattaggtactactattaaaaa-ttgtaaatgagtgatatgtacacgtgagacccatttaagaatccaaaaatgagtgtctccattgtg 9135193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 35973403 - 35973345
Alignment:
Q  157 ttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    |||||| | ||||||||||||||||||||||||||| | ||||| ||| ||| ||||||    
T  35973403 ttaggtacaactattaaaaaattataaataagtaatctgtacacatgaaacttatttaa 35973345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 14426126 - 14426069
Alignment:
Q  169 attaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaa 226  Q
    |||||||||||||||| |||| |||| |||||||| ||| |||||||| | |||||||    
T  14426126 attaaaaaattataaagaagtgatgtgtacacgtgtgacccatttaagaactaaaaaa 14426069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 28557341 - 28557390
Alignment:
Q  145 attgagtacttgttaggtgctactattaaaaaattataaataagtaatgt 194  Q
    |||||||| || |||||| |||||||||||||||||||||| ||| ||||    
T  28557341 attgagtagttattaggtactactattaaaaaattataaattagtgatgt 28557390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 31128587 - 31128518
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcattt 213  Q
    |||||| | ||| |||||| |||||||||||||||||||||| ||| |||| ||  |||||||| |||||    
T  31128587 gattgaatgcttattaggtactactattaaaaaattataaatgagtgatgtgtatgcgtgagacccattt 31128518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 35468425 - 35468497
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    ||||||||||||| ||| || || ||||||||| ||||||||| ||| |||| ||| |||||||| ||||||||    
T  35468425 ggattgagtacttattaagtactgctattaaaa-attataaatgagtgatgtgtacgcgtgagacccatttaag 35468497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 1155178 - 1155110
Alignment:
Q  133 tgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacg 201  Q
    ||||||| | ||||||| | ||| |||| | |||||||||||||||||||||| ||| |||| ||||||    
T  1155178 tgggttggagggattgaatgcttattagatactactattaaaaaattataaatgagtgatgtgtacacg 1155110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 4797245 - 4797189
Alignment:
Q  162 tgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    |||||||||||||||||||||||| ||| ||   |||||||||||  ||||||||||    
T  4797245 tgctactattaaaaaattataaattagtgatacgtacacgtgagatccatttaagta 4797189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 35309016 - 35308923
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctc 236  Q
    ||||||||||||| |||| |  ||||||||||||||||||||||||| | || ||| ||||||||||||||||||| | |||||||||| ||||    
T  35309016 ggattgagtacttattagatattactattaaaaaattataaataagtgacgtgtacgcgtgagactcatttaagtattcaaaaatgaatatctc 35308923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 2396392 - 2396464
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    |||||||| ||| |||||| |||||||||| ||||||||||||||| |||| |||||||| ||||||||||||    
T  2396392 gattgagttcttattaggtactactattaacaaattataaataagtgatgtgtacacgtgggactcatttaag 2396464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 35332014 - 35331906
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||||||| ||| ||| || |||||||||||||| |||||||||||||||| || ||||| |||||||||||  |  |||||||| || ||||| |||||    
T  35332014 gattgagtgcttattatgtactactattaaaaaagtataaataagtaatgtgtatacgtgggactcatttaacaaccaaaaaatggatatctccattgtg 35331915  T
Q  244 gatgttcta 252  Q
    |||| ||||    
T  35331914 gatgctcta 35331906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 12447493 - 12447610
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaa 224  Q
    ||||||| |||||| |||||||||||| ||| |||    |||||||||||||||||||||||||| || | ||| |||||||| ||||||||||   |||    
T  12447493 tgagatgctgggttaaaaggattgagttcttattatagactactattaaaaaattataaataagtgatttgtactcgtgagac-catttaagtatccaaa 12447591  T
Q  225 aatgaatgtctccgttgtg 243  Q
    |||| ||||||| ||||||    
T  12447592 aatggatgtctctgttgtg 12447610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 10180643 - 10180560
Alignment:
Q  145 attgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatg 228  Q
    ||||||| ||| |||||| |||||||||||||||||||||| ||| || | |||||||||||  |||||||||| | |||||||    
T  10180643 attgagttcttattaggtactactattaaaaaattataaatgagtgatatgtacacgtgagatccatttaagtacttaaaaatg 10180560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 23607467 - 23607518
Alignment:
Q  164 ctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  23607467 ctactattaaaaaattataaataagtaatgtgtatacgtgagacccatttaa 23607518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 42426940 - 42426850
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    |||||| || ||||| | |||||||||  || |||| | |||||||||||||||||||||||||||| || |||||||||||  |||||||    
T  42426940 tgagatattaggttggagggattgagtttttattagatactactattaaaaaattataaataagtaacgtgtacacgtgagatccatttaa 42426850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 247
Target Start/End: Original strand, 52199896 - 52199999
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||||| | ||| |||||| |||||||||||||||||||||| ||| | || | |||||| ||| |||||||| |   |||||||  |||||||||||||    
T  52199896 gattgaatgcttattaggtactactattaaaaaattataaatgagtgacgtgtgcacgtgggacccatttaagaacccaaaaatgggtgtctccgttgtg 52199995  T
Q  244 gatg 247  Q
    ||||    
T  52199996 gatg 52199999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 8489505 - 8489456
Alignment:
Q  166 actattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    |||||||||||||||||||||||| |||| ||||||| |||| |||||||    
T  8489505 actattaaaaaattataaataagtgatgtatacacgtaagacccatttaa 8489456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 39055262 - 39055327
Alignment:
Q  151 tacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    ||||| |||||| ||| |||||||||||||||||| ||| |||| ||| |||||||| ||||||||    
T  39055262 tacttattaggtactaatattaaaaaattataaatgagtgatgtgtacgcgtgagacccatttaag 39055327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 28897710 - 28897758
Alignment:
Q  170 ttaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    |||||||||||||||| ||| || | |||||||||||||||||||||||    
T  28897710 ttaaaaaattataaatgagtgatatatacacgtgagactcatttaagta 28897758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 45833962 - 45834010
Alignment:
Q  165 tactattaaaaaattataaataagtaatgtttacacgtgagactcattt 213  Q
    ||||||||||||||||||||| ||| |||| |||||||||||| |||||    
T  45833962 tactattaaaaaattataaatgagtgatgtgtacacgtgagacccattt 45834010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 18743312 - 18743207
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaa-aaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttg 241  Q
    ||||||||| ||| |||||| |||||||||| |||||||||||||   ||||  |||| ||||| ||||||||||||  ||||||||  ||||||| ||     
T  18743312 ggattgagtgcttattaggtactactattaaaaaaattataaata---aatgcgtacatgtgaggctcatttaagta-caaaaaatgggtgtctccatta 18743217  T
Q  242 tggatgttct 251  Q
    ||||||||||    
T  18743216 tggatgttct 18743207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 28909490 - 28909407
Alignment:
Q  164 ctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatg 247  Q
    ||||| |||||||||||||||| ||  |||| ||||||||||| ||||||||  |   |||||| ||||||||| |||||||||    
T  28909490 ctactgttaaaaaattataaatgagcgatgtatacacgtgagattcatttaataacccaaaaataaatgtctccattgtggatg 28909407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 49211102 - 49211213
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaa-aattataaataagtaatgtttacacgtgagactcatttaagtagtaaa 223  Q
    ||||||| | ||||| | |||| |||| ||| |||| | |||||||||||| |||||||||||| | || | ||||||||| ||  ||||||||| | ||    
T  49211102 tgagatgctaggttggagggatagagttcttattagatactactattaaaaaaattataaataaatgatatgtacacgtgaaacctatttaagtactcaa 49211201  T
Q  224 aaatgaatgtct 235  Q
    ||||||||||||    
T  49211202 aaatgaatgtct 49211213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 822421 - 822367
Alignment:
Q  133 tgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataa 187  Q
    ||||||| | ||||||||||||| |||| | |||||||||||||| |||||||||    
T  822421 tgggttggagggattgagtacttattagatactactattaaaaaactataaataa 822367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 8825074 - 8825156
Alignment:
Q  165 tactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatg 247  Q
    ||||| ||||||||||||||| ||| |||| |||||||| |||||| ||||| |    ||||| ||||||||| |||||||||    
T  8825074 tactactaaaaaattataaatgagtgatgtatacacgtgtgactcaattaagaacccgaaaataaatgtctccattgtggatg 8825156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 30865975 - 30866076
Alignment:
Q  150 gtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatgtt 249  Q
    |||||| |||||| |||||||||||||||||||| | ||| |||| ||||  || | | ||||||||||  ||||||||||| ||||  ||||||||| |    
T  30865975 gtacttattaggtactactattaaaaaattataagtgagtgatgtatacatatgtggc-catttaagtaccaaaaaatgaatatctctattgtggatgct 30866073  T
Q  250 cta 252  Q
    |||    
T  30866074 cta 30866076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 35144470 - 35144552
Alignment:
Q  133 tgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    ||||||| | ||||||| | ||| |||| | |||||| ||||||||||||||||| | || | |||||||||||| |||||||    
T  35144470 tgggttggagggattgaatgcttattagatactactactaaaaaattataaataattgatatgtacacgtgagacccatttaa 35144552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 53096657 - 53096599
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataa 183  Q
    |||||||||||||| || ||||||||| ||| ||| ||  |||||||||||||||||||    
T  53096657 tgagatgttgggttaaagggattgagttcttattaagtattactattaaaaaattataa 53096599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 8892410 - 8892342
Alignment:
Q  179 tataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatg 247  Q
    ||||||||| | |||| |||| ||| |||  ||||||||| |||||||||||||||||  |||||||||    
T  8892410 tataaataaatgatgtgtacatgtgggacctatttaagtactaaaaaatgaatgtctctattgtggatg 8892342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 23359195 - 23359263
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatt 212  Q
    |||||||| ||| |||| | |||||||||||||||||||||| | | |||| || | ||||||||||||    
T  23359195 gattgagtgcttattagatactactattaaaaaattataaatgaatgatgtgtatatgtgagactcatt 23359263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 33755833 - 33755932
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||||| ||||| |||||| ||||||||||||||| ||||||||||||||| ||||| |||||| |||||||| |  ||| |||| |||||||| |||||    
T  33755833 gattgaatacttattaggtactactattaaaaaataataaataagtaatgtatacacttgagacccatttaagaaccaaagaatggatgtctccattgtg 33755932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 7693964 - 7693850
Alignment:
Q  133 tgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactc-atttaagtagtaaaaaatgaat 231  Q
    ||||||| | ||||||||||||| |||||| ||| || ||||||||||||||| ||| |||| || ||||||||| | ||||||||| || ||||||| |    
T  7693964 tgggttggagggattgagtacttattaggtactattactaaaaaattataaatgagtgatgtgtatacgtgagacccaatttaagtattagaaaatgagt 7693865  T
Q  232 gtctccgttgtggat 246  Q
    |||||| ||||||||    
T  7693864 gtctccattgtggat 7693850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 32658443 - 32658353
Alignment:
Q  157 ttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatg 247  Q
    |||||| |||||||||||||||||||||| ||| |||| | |||||||||| |||||||| |   |||||||| |||||||  ||||||||    
T  32658443 ttaggtactactattaaaaaattataaatgagtgatgtgtccacgtgagacccatttaagaacctaaaaatgagtgtctccactgtggatg 32658353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 3705753 - 3705662
Alignment:
Q  141 aaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatg 232  Q
    ||||||||| ||||| |||||| ||||||||||||||||  |||||||| |||| ||| ||||| |   ||||||||| | |||||||||||    
T  3705753 aaggattgaatacttattaggtactactattaaaaaattccaaataagtgatgtgtacgcgtgaaatctatttaagtatttaaaaatgaatg 3705662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 3543292 - 3543353
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtga 204  Q
    ||||| |||||||||||| |  |||||||||||| |||||||| |||||||| |||||||||    
T  3543292 ggattaagtacttgttagataatactattaaaaatttataaatgagtaatgtgtacacgtga 3543353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 31743608 - 31743527
Alignment:
Q  127 agatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagact 208  Q
    ||||||| ||||||| ||||||||| ||| |||| | |||||||||||| ||||||||| | | |||| |||||| ||||||    
T  31743608 agatgttcggttgaagggattgagttcttattagatactactattaaaatattataaatgaattatgtatacacgcgagact 31743527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 387839 - 387891
Alignment:
Q  164 ctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    |||||||||||||||||||||| ||| |||| |||| ||| ||||||||||||    
T  387839 ctactattaaaaaattataaatgagttatgtgtacatgtgggactcatttaag 387891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 32977414 - 32977299
Alignment:
Q  133 tgggttgaaaggattgagtacttgttaggtgctactattaa-aaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaat 231  Q
    ||||||| | ||||||||| ||| |||||| |||||||||| ||||| |||||| ||| |||| ||| |||| ||| ||||||||||   |||||||  |    
T  32977414 tgggttggagggattgagtgcttattaggtactactattaaaaaaatcataaatgagtgatgtgtacgcgtgggacccatttaagtacccaaaaatgggt 32977315  T
Q  232 gtctccgttgtggatg 247  Q
    |||||| |||| ||||    
T  32977314 gtctccattgtagatg 32977299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 5002371 - 5002297
Alignment:
Q  172 aaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggat 246  Q
    |||||||||||||||||| |||| ||||||| |||| |||||||  |   ||||||| |||||||| ||||||||    
T  5002371 aaaaaattataaataagtgatgtgtacacgtaagacccatttaaaaacccaaaaatggatgtctccattgtggat 5002297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 27544454 - 27544548
Alignment:
Q  133 tgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaat 227  Q
    ||||||| | ||||||||| ||| |||| ||||| |||||||||||||||||| ||| |||| ||||| |||||| ||||||||||  |||||||    
T  27544454 tgggttggagggattgagtgcttattagatgctattattaaaaaattataaatgagtgatgtgtacacatgagacccatttaagtaccaaaaaat 27544548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 47364436 - 47364517
Alignment:
Q  164 ctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggat 246  Q
    |||||||| ||||||||||||| ||||||||  ||||||||||| ||||||||||   ||||||| |||||||||||||||||    
T  47364436 ctactatttaaaaattataaatgagtaatgtgaacacgtgagac-catttaagtatctaaaaatggatgtctccgttgtggat 47364517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 13984131 - 13984239
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||||||||||| |||| | ||||||||||||||||||||||  || |||| ||  |||| ||| |||||||| | | ||||||| |||||||| |||||    
T  13984131 gattgagtacttattagatactactattaaaaaattataaatgtgtgatgtgtatgcgtgggacccatttaagaacttaaaaatggatgtctccattgtg 13984230  T
Q  244 gatgttcta 252  Q
    |||| ||||    
T  13984231 gatgctcta 13984239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 36166986 - 36167085
Alignment:
Q  145 attgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtgg 244  Q
    |||||||| || |||||| |||| ||||||||||||||||||| | |||| |||| ||| ||| |||||||| | ||||||||||| |||||| ||||||    
T  36166986 attgagtaattattaggtactac-attaaaaaattataaataaatgatgtgtacatgtgggacccatttaagaactaaaaaatgaaggtctccattgtgg 36167084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 38902061 - 38902157
Alignment:
Q  148 gagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtgg 244  Q
    |||| ||| |||||| |||||||||||||||||||||| ||| || | |||||||||||| |||||||| |   |||||||| ||||||| ||||||    
T  38902061 gagtgcttattaggtactactattaaaaaattataaatgagtgatatgtacacgtgagacccatttaagaacccaaaaatgagtgtctccattgtgg 38902157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 51504579 - 51504491
Alignment:
Q  128 gatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    |||| ||||||| | | |||||||||||  || || |||||||||||||||||||||| ||| |||| |||||||||||| ||||||||    
T  51504579 gatgatgggttggaggaattgagtacttaatacgtactactattaaaaaattataaatgagtgatgtatacacgtgagacccatttaag 51504491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 43822870 - 43822977
Alignment:
Q  145 attgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtgg 244  Q
    ||||||| ||| |||| | |||||||||||||||||||||| ||| |||| ||| |||| ||| |||||||| |  ||||||||  | ||||| ||||||    
T  43822870 attgagtgcttattagatactactattaaaaaattataaatgagtgatgtgtacgcgtgggacccatttaagaaccaaaaaatgggtatctccattgtgg 43822969  T
Q  245 atgttcta 252  Q
    ||| ||||    
T  43822970 atgctcta 43822977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 52353820 - 52353745
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    |||| |||| ||| |||||| || ||||||||||||||||||| ||| |||| |||||||| ||| ||||||||||    
T  52353820 ggatcgagtgcttattaggtactgctattaaaaaattataaattagtgatgtgtacacgtgggacccatttaagta 52353745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 42831752 - 42831838
Alignment:
Q  157 ttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||||| |||||||||||||||||||||| |||||| | |||| ||||||  |||| ||||   |||||||| |||||||| |||||    
T  42831752 ttaggtactactattaaaaaattataaatgagtaatatgtacatgtgagatccattcaagtgccaaaaaatggatgtctccattgtg 42831838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 252
Target Start/End: Original strand, 25813833 - 25813937
Alignment:
Q  148 gagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatg 247  Q
    |||||||| ||| || || ||||||||||||||||||| ||| |||| ||| |||| |||  ||||||| |   ||||||| |||||||| || ||||||    
T  25813833 gagtacttattatgtacttctattaaaaaattataaatgagtgatgtgtacgcgtgggacctatttaagaacccaaaaatggatgtctccattatggatg 25813932  T
Q  248 ttcta 252  Q
    |||||    
T  25813933 ttcta 25813937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 32451789 - 32451717
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    |||||| | ||| ||||||  ||||||||||||||||||||| ||| |||| || ||||||||| ||||||||    
T  32451789 gattgaatgcttattaggtattactattaaaaaattataaattagtgatgtgtaaacgtgagacccatttaag 32451717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 49003394 - 49003292
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||||| ||||| ||||||  ||||||||||||||||||||  |||||||| |||| |||||||  |||||| || | ||||||| | |||||| || ||    
T  49003394 gattgaatacttattaggtattactattaaaaaattataaa-gagtaatgtgtacatgtgagacctatttaaatattcaaaaatggaggtctccattatg 49003296  T
Q  244 gatg 247  Q
    ||||    
T  49003295 gatg 49003292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 15726954 - 15726900
Alignment:
Q  164 ctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    |||||||||||||||||||||||| | ||||  || ||||||| |||||||||||    
T  15726954 ctactattaaaaaattataaataaattatgtgcacgcgtgagattcatttaagta 15726900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 33326236 - 33326186
Alignment:
Q  168 tattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    |||||||||||||||||| ||| ||||  ||||||| ||||||||||||||    
T  33326236 tattaaaaaattataaatgagtgatgtgcacacgtgtgactcatttaagta 33326186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 37524211 - 37524138
Alignment:
Q  164 ctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctcc 237  Q
    |||||||||||||||||||||| | | |||| | | ||| ||||| ||||||||| | ||||||| ||||||||    
T  37524211 ctactattaaaaaattataaatgaatgatgtattcccgtaagacttatttaagtatttaaaaatggatgtctcc 37524138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 47783660 - 47783612
Alignment:
Q  168 tattaaaaaattataaataagtaatgtttacacgtgagactcatttaag 216  Q
    ||||||||||||||||| || | |||| |||||||||||| ||||||||    
T  47783660 tattaaaaaattataaacaaatgatgtgtacacgtgagacccatttaag 47783612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 38224060 - 38224145
Alignment:
Q  133 tgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    ||||||||| ||||||||||||| |||||| |||| || |||||||| ||||||| | |||| ||||  |||||||||||||||||    
T  38224060 tgggttgaagggattgagtacttattaggtactaccatcaaaaaattctaaataaatcatgtgtacatatgagactcatttaagta 38224145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 46748064 - 46747955
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgt 242  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||| |||| || | ||| ||| |||||||  |   ||||||| ||||||| ||| |    
T  46748064 ggattgagttcttattaggtgctactattaaaaaattataaataagtgatgtgtataagtgggacccatttaaaaacccaaaaatggatgtctcagttat 46747965  T
Q  243 ggatgttcta 252  Q
    ||||| ||||    
T  46747964 ggatgctcta 46747955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 43302149 - 43302057
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctc 236  Q
    ||||||||| || |||||| |||||||||||||||||||||| ||| |||| |||| ||||||||||  |||| | | ||||||| |||||||    
T  43302149 gattgagtatttattaggtactactattaaaaaattataaatgagttatgtgtacaggtgagactcacataagaattcaaaaatggatgtctc 43302057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 47841471 - 47841378
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagta 218  Q
    ||||||| | ||||| | ||||||||||||| |||  | ||||||||| |||||||||||| ||| |||| |||| ||| ||||||||||||||    
T  47841471 tgagatgcttggttggagggattgagtacttattaaatactactattacaaaattataaatgagttatgtgtacatgtgggactcatttaagta 47841378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 39853896 - 39853967
Alignment:
Q  180 ataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtggatgttct 251  Q
    ||||||||||||||| |||| ||| |||||||||||| |  ||||||||| | ||||| |||||||||||||    
T  39853896 ataaataagtaatgtgtacatgtgtgactcatttaagaaccaaaaaatgagtatctccattgtggatgttct 39853967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 4958321 - 4958419
Alignment:
Q  130 tgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatg 228  Q
    |||| ||||| | |||||||||  || |||| | |||||||||||||||||||||| | | |||| |||||||  ||||||||||| || |||||||||    
T  4958321 tgttcggttggagggattgagtgtttattagatactactattaaaaaattataaatgaatgatgtgtacacgtaggactcatttaaatactaaaaaatg 4958419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 30859666 - 30859736
Alignment:
Q  145 attgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaa 215  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||| || | ||||||| |||| |||||||    
T  30859666 attgagtacttattgggtactactattaaaaaattataaatgagtgatatatacacgtaagacccatttaa 30859736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 23801860 - 23801763
Alignment:
Q  146 ttgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||||||||| |||||| ||| ||||||||||||| |||   || || | ||||||||  |||||||||||||  ||||||||| ||||||| |||||    
T  23801860 ttgagtacttattaggtactattattaaaaaattaaaaacgggtgatatgtacacgtggaactcatttaagtaccaaaaaatgagtgtctccattgtg 23801763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 31330473 - 31330538
Alignment:
Q  129 atgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgt 194  Q
    ||||||||||| | ||||||||| ||| |||||| |||| ||||||||||||||||| ||| ||||    
T  31330473 atgttgggttggagggattgagtgcttattaggtactaccattaaaaaattataaatgagtgatgt 31330538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 36657919 - 36657818
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctccgttgtg 243  Q
    |||||||| ||| |||| |  ||||||||||||||||||||| || ||||| ||||| |||||| |||||||| |   |||||||  ||||||| |||||    
T  36657919 gattgagtgcttattagatagtactattaaaaaattataaatgagcaatgtgtacacatgagacccatttaagaacccaaaaatgggtgtctccattgtg 36657820  T
Q  244 ga 245  Q
    ||    
T  36657819 ga 36657818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 29914412 - 29914340
Alignment:
Q  165 tactatta-aaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctc 236  Q
    |||||||| ||||||||||||||||| |||  || || |||||||||||||| ||  ||||||||||||||||    
T  29914412 tactattataaaaattataaataagtgatgcgtaaacttgagactcatttaaataccaaaaaatgaatgtctc 29914340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 31322330 - 31322251
Alignment:
Q  157 ttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaatgaatgtctc 236  Q
    |||||| ||||| |||||||||||||||| ||| |||| ||||  || ||| ||||||||||  |||||||| |||||||    
T  31322330 ttaggtactactgttaaaaaattataaatgagtgatgtgtacatatgtgacccatttaagtaccaaaaaatggatgtctc 31322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 5513887 - 5513805
Alignment:
Q  134 gggttgaaaggattgagtacttgttaggtgctactattaaaaaa-ttataaataagtaatgtttacacgtgagactcatttaa 215  Q
    |||||| | |||||||| |||| |||| |  ||||||||||||| |||||||||||| |||| |||||||||||  |||||||    
T  5513887 gggttggagggattgagaacttattagatattactattaaaaaaattataaataagtgatgtgtacacgtgagatccatttaa 5513805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 19987234 - 19987294
Alignment:
Q  125 tgagatgttgggttgaaaggattgagtacttgttaggtgctactattaaaaaattataaat 185  Q
    ||||||||||||||| | ||||   |||||| ||| || ||||||||||||||||||||||    
T  19987234 tgagatgttgggttggagggatcatgtacttattatgtactactattaaaaaattataaat 19987294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 27334478 - 27334510
Alignment:
Q  157 ttaggtgctactattaaaaaattataaataagt 189  Q
    |||||| ||||||||||||||||||||||||||    
T  27334478 ttaggtactactattaaaaaattataaataagt 27334510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 36656640 - 36656556
Alignment:
Q  143 ggattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaat 227  Q
    |||||||||| || |||| | | |||||||||||||||||||| ||| || | || | ||||||| ||||||||||  |||||||    
T  36656640 ggattgagtatttattagataccactattaaaaaattataaatgagtgatatatataagtgagacccatttaagtaccaaaaaat 36656556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 63644 - 63727
Alignment:
Q  144 gattgagtacttgttaggtgctactattaaaaaattataaataagtaatgtttacacgtgagactcatttaagtagtaaaaaat 227  Q
    |||||||| ||| |||||| |||||||||||||||||||||| ||| |  | ||||||||||||  |||||||||  |||||||    
T  63644 gattgagtccttattaggtactactattaaaaaattataaattagtgacatgtacacgtgagacctatttaagtaccaaaaaat 63727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University