View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18516_low_1 (Length: 711)
Name: NF18516_low_1
Description: NF18516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18516_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 310 - 656
Target Start/End: Complemental strand, 40079398 - 40079052
Alignment:
| Q |
310 |
atatgttgtgtgcatcaaacatttccttttgagatagacaagaggtacacataagagatggaaatggatacatgtaattaaggttagcagcaaacttcgt |
409 |
Q |
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| T |
40079398 |
atatgttgtgtacatcaaacatttccttttgagatagacaagaggtacacataagagatggaaatggatacatgtaattaaggttagcagcaaacttcgt |
40079299 |
T |
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| Q |
410 |
tcctgcaacgtcaacaacataacaaacacatgcatatttttataacgaaatgcgtgaaaaattggtaacggtatgcacataaagtgggagttatagcacc |
509 |
Q |
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| T |
40079298 |
tcctgcaacgtcaacaacataacaaacacatgcatatttttattacgaaatgcgtgaaaaattggtaacggtatgcacataaaatgggagttaaagcacc |
40079199 |
T |
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| Q |
510 |
tatatagaatagaacnnnnnnncttaaataactgataaataattgttatgttacaattagacatgtattttgtcaatcttttgttatattcttgcccaac |
609 |
Q |
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| T |
40079198 |
tatatagaatagaacaaaaaaacttaaataactgataaataattgttatgttacaattagacatgtattttgtcaatcttttgttatattcttgcccaac |
40079099 |
T |
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| Q |
610 |
aatgaaaagttggttttttcttcttcaaaataacatgattaaacatg |
656 |
Q |
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| T |
40079098 |
aatgaaaagttggtttcttcttcttcaaaataacatgattaaacatg |
40079052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 40079688 - 40079418
Alignment:
| Q |
19 |
ctcatctcttaccttttgctcattttagaattgggttaatgattt-gaggcaactattgcgcgcgagaaaaggaattgggggaattttcctccatgattt |
117 |
Q |
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| T |
40079688 |
ctcatctgttaccttttgctcattttagaattgggttaatgattttgaggcaactattgcgcgagagaaaaggaattgggggaattttcctccatgattt |
40079589 |
T |
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| Q |
118 |
ttccgtccatttgacacaaatatatttgaagatcatgtgtccattcatattctctaccacgcaatattcgtatcaaatggtttaacataattttaaaatc |
217 |
Q |
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| T |
40079588 |
tcccgtccatttgacacaaatatatttgaaggtcatgtgcccattcatattctctaccacgcaatattcgtatcaaatggtttaacataattttaaaatc |
40079489 |
T |
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| Q |
218 |
aac--------------------taaatcctaacactcattcgacacttcatttatctctacaaatcttct |
268 |
Q |
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| T |
40079488 |
aacaatgatacatgtacatttcataaatcctaacactcattcgacacttcatttatctctacaaatcttct |
40079418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 666 - 697
Target Start/End: Complemental strand, 40079032 - 40079001
Alignment:
| Q |
666 |
cacaaaaatatgtggtatattattggcctttg |
697 |
Q |
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| T |
40079032 |
cacaaaaatatgtggtatattattggcctttg |
40079001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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