View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18516_low_10 (Length: 250)

Name: NF18516_low_10
Description: NF18516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18516_low_10
NF18516_low_10
[»] chr1 (9 HSPs)
chr1 (9-161)||(2765631-2765783)
chr1 (22-155)||(31065209-31065342)
chr1 (22-155)||(15183877-15184010)
chr1 (22-155)||(27458195-27458328)
chr1 (218-250)||(2765833-2765865)
chr1 (31-75)||(16580596-16580640)
chr1 (22-110)||(35307254-35307342)
chr1 (64-159)||(27584920-27585015)
chr1 (22-110)||(31165616-31165704)
[»] chr8 (6 HSPs)
chr8 (22-154)||(26600791-26600922)
chr8 (23-155)||(11175273-11175405)
chr8 (22-93)||(15175311-15175382)
chr8 (31-98)||(4606339-4606406)
chr8 (127-159)||(1824389-1824421)
chr8 (127-159)||(1858834-1858866)
[»] chr3 (5 HSPs)
chr3 (31-159)||(22224085-22224213)
chr3 (22-101)||(29306171-29306250)
chr3 (17-155)||(16194335-16194473)
chr3 (28-101)||(2757250-2757323)
chr3 (33-110)||(8795811-8795888)
[»] chr7 (2 HSPs)
chr7 (28-145)||(47085040-47085157)
chr7 (26-76)||(43230802-43230853)
[»] chr2 (6 HSPs)
chr2 (22-159)||(33428708-33428844)
chr2 (23-145)||(29875265-29875387)
chr2 (22-98)||(18704816-18704892)
chr2 (22-95)||(35341882-35341955)
chr2 (28-95)||(83554-83621)
chr2 (30-110)||(36472465-36472545)
[»] chr4 (6 HSPs)
chr4 (23-76)||(25856980-25857033)
chr4 (32-153)||(15831972-15832095)
chr4 (22-101)||(23441509-23441586)
chr4 (31-94)||(15831884-15831949)
chr4 (28-101)||(48547021-48547094)
chr4 (48-101)||(48685896-48685949)
[»] scaffold0001 (1 HSPs)
scaffold0001 (22-110)||(508076-508164)
[»] chr6 (1 HSPs)
chr6 (29-153)||(11751744-11751868)
[»] chr5 (3 HSPs)
chr5 (22-110)||(994890-994979)
chr5 (127-159)||(16600314-16600346)
chr5 (22-54)||(33401534-33401566)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 2765631 - 2765783
Alignment:
Q  9 gaagaatatatgtgtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttga 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  2765631 gaagaaaatatgtgtaataatgtttgatgtcataagcatttttggatctatcacctcaatgttaaatgatttataaatattttttaacaaagtcggttga 2765730  T
Q  109 aataatgagtgacaacttaaatattctatgacttaaatgaccaatttataaat 161  Q
    || ||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  2765731 aacaatgagtgacggcgtaaatattctatgacttaaatgaccaatttataaat 2765783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 31065209 - 31065342
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgac 121  Q
    ||||| ||||||||| ||||||||||||||||| ||| || || ||| | ||||| | ||||| || |||||||| |||| || ||||| ||||  ||||    
T  31065209 gtaatcatgtttgatatcataagcatttttggacctaccatcttaatttcaaatggtctataagcactttttaacgaagttggctgaaaaaatggatgac 31065308  T
Q  122 aacttaaatattctatgacttaaatgaccaattt 155  Q
    ||  |||||||||||| | ||||| |||||||||    
T  31065309 aatgtaaatattctataatttaaaagaccaattt 31065342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 15183877 - 15184010
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgac 121  Q
    ||||| ||||||||||||||||||| ||||||| ||| || || ||| ||||||| | ||||| || |||||||| |||| || | |||  |||  |||     
T  15183877 gtaatcatgtttgatgtcataagcacttttggacctaccatcttaatgttaaatggtctataagcactttttaacgaagttggctaaaaagatggatgat 15183976  T
Q  122 aacttaaatattctatgacttaaatgaccaattt 155  Q
    |   |||||||||||||||||||| || ||||||    
T  15183977 agtgtaaatattctatgacttaaaggatcaattt 15184010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 27458328 - 27458195
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgac 121  Q
    ||||| |||||||||||||||| || ||||| | ||| || || ||  ||||||| ||||||| ||||||||||| |||| || |||||  |||  |  |    
T  27458328 gtaatcatgtttgatgtcataaacacttttgaacctaccatcttaagtttaaatggtttataagcattttttaacgaagttggctgaaaagatggattgc 27458229  T
Q  122 aacttaaatattctatgacttaaatgaccaattt 155  Q
    ||  |||||||||||||| ||||| |||||||||    
T  27458228 aatgtaaatattctatgatttaaaggaccaattt 27458195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 2765833 - 2765865
Alignment:
Q  218 ttgttataaacatttaatttgatagaccgcgca 250  Q
    |||||||||||||||||||||||||||||||||    
T  2765833 ttgttataaacatttaatttgatagaccgcgca 2765865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 16580596 - 16580640
Alignment:
Q  31 tttgatgtcataagcatttttggatctatcacctcaatattaaat 75  Q
    ||||||||||||| || ||||||||||||||||||||| ||||||    
T  16580596 tttgatgtcataaacacttttggatctatcacctcaatgttaaat 16580640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 35307254 - 35307342
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaa 110  Q
    ||||| ||||||||||||| || || ||||||| ||| || || ||| ||||||||| |||||||| |||||||| |||| || |||||    
T  35307254 gtaatcatgtttgatgtcaaaaacacttttggacctaccatcttaatgttaaatgatctataaacactttttaacgaagttggctgaaa 35307342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 27584920 - 27585015
Alignment:
Q  64 tcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgacaacttaaatattctatgacttaaatgaccaatttataa 159  Q
    ||||| |||| ||||| ||||||| |||||||  |||| | |||||| ||||||| ||||  |||||||| ||||| |||||  ||||||||||||    
T  27584920 tcaatgttaagtgattaataaacactttttaatgaagttgattgaaaaaatgagtaacaatataaatattatatgatttaaagcaccaatttataa 27585015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 31165704 - 31165616
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaa 110  Q
    ||||| ||||||||||||||||||| ||||||| ||| || || ||| ||||||| | ||||| ||  ||||||| |||| || |||||    
T  31165704 gtaatcatgtttgatgtcataagcacttttggacctaccatcttaatgttaaatggtctataagcacgttttaacgaagttggatgaaa 31165616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 26600922 - 26600791
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgac 121  Q
    ||||| ||||||||||||||||||| ||||||| ||| || || ||| ||||||  |||||||||| |||||||| |||| || |||||  |||  ||||    
T  26600922 gtaatcatgtttgatgtcataagcacttttggacctaccatcttaatgttaaattgtttataaacactttttaacgaagttggctgaaaagatggatgac 26600823  T
Q  122 aacttaaatattctatgacttaaatgaccaatt 154  Q
    |   |||||||||||||||||||| ||||||||    
T  26600822 agtgtaaatattctatgacttaaa-gaccaatt 26600791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 11175405 - 11175273
Alignment:
Q  23 taataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgaca 122  Q
    |||| ||||||||||||||||||| ||||| | |||||| || ||| ||| ||  | ||||||||||||||||| |||| |  |||||  || | |||||    
T  11175405 taatcatgtttgatgtcataagcacttttgaacctatcatcttaatgttagatagtctataaacattttttaacgaagttgactgaaaagataaatgaca 11175306  T
Q  123 acttaaatattctatgacttaaatgaccaattt 155  Q
    |  ||| |||||||||||||||| |||||||||    
T  11175305 atgtaagtattctatgacttaaaggaccaattt 11175273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 15175311 - 15175382
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacatttttt 93  Q
    ||||| ||||||||||||||||||||||||||| ||| || || ||||||||||||| ||||| || |||||    
T  15175311 gtaatcatgtttgatgtcataagcatttttggacctaccatcttaatattaaatgatctataagcacttttt 15175382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 4606339 - 4606406
Alignment:
Q  31 tttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaa 98  Q
    |||||||||||||  | ||||||||||| ||||||||| |||||||||  |||||||  |||||||||    
T  4606339 tttgatgtcataaatacttttggatctaacacctcaatgttaaatgatccataaacaccttttaacaa 4606406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 1824389 - 1824421
Alignment:
Q  127 aaatattctatgacttaaatgaccaatttataa 159  Q
    ||||||| |||||||||||||||||||||||||    
T  1824389 aaatattttatgacttaaatgaccaatttataa 1824421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 1858834 - 1858866
Alignment:
Q  127 aaatattctatgacttaaatgaccaatttataa 159  Q
    ||||||| |||||||||||||||||||||||||    
T  1858834 aaatattttatgacttaaatgaccaatttataa 1858866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 22224085 - 22224213
Alignment:
Q  31 tttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgacaacttaaat 130  Q
    ||||||||||||| || ||||||| ||| ||| ||||| ||| |||||  ||||||||||||||||||||| |  ||||| ||||| | || |  |||||    
T  22224085 tttgatgtcataaacacttttggacctaccacatcaatgttagatgatccataaacattttttaacaaagttgaatgaaacaatgattaacgatataaat 22224184  T
Q  131 attctatgacttaaatgaccaatttataa 159  Q
    |||||| | ||||||||| ||||||||||    
T  22224185 attctacggcttaaatgatcaatttataa 22224213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 29306250 - 29306171
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagt 101  Q
    ||||||||||||||||||||||||| ||||| | ||| || || ||||||||||| | |||||||| |||| ||| ||||    
T  29306250 gtaataatgtttgatgtcataagcacttttgaacctaccatcttaatattaaatggtctataaacacttttcaacgaagt 29306171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 16194335 - 16194473
Alignment:
Q  17 tatgtgtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatga 116  Q
    |||| ||||| | ||||||||||||||||| ||||||| ||| || || ||| ||||||| | |||||||| |||||||| |||| || |||||  |||     
T  16194335 tatgagtaatcacgtttgatgtcataagcacttttggacctaccatcttaatgttaaatggtctataaacactttttaacgaagttggctgaaaagatgg 16194434  T
Q  117 gtgacaacttaaatattctatgacttaaatgaccaattt 155  Q
     ||||    |||||||| ||||||||||| || ||||||    
T  16194435 atgacggtgtaaatattttatgacttaaaggatcaattt 16194473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 2757323 - 2757250
Alignment:
Q  28 atgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagt 101  Q
    ||||||||| |||||||||||||| || || |||||||||| ||||||| |  || |||| |||||||||||||    
T  2757323 atgtttgatatcataagcatttttagacctctcacctcaatgttaaatggtacatcaacaatttttaacaaagt 2757250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 8795811 - 8795888
Alignment:
Q  33 tgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaa 110  Q
    |||||||||||| | ||||||| ||| || || ||||||||||| ||||||| || |||||||| |||| | ||||||    
T  8795811 tgatgtcataagtacttttggacctaccatcttaatattaaatggtttataagcactttttaacgaagttgcttgaaa 8795888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 47085040 - 47085157
Alignment:
Q  28 atgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgacaactta 127  Q
    ||||||||||| |||| |||||||| | ||| || || ||| |||||||||||| ||||| |||||||| |||| || ||||| ||||  |||||   ||    
T  47085040 atgtttgatgtaataaacatttttgaacctaccatcttaatgttaaatgatttacaaacactttttaacgaagttggctgaaaaaatggatgacagtata 47085139  T
Q  128 aatattctatgacttaaa 145  Q
    ||||||||||||||||||    
T  47085140 aatattctatgacttaaa 47085157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 43230853 - 43230802
Alignment:
Q  26 taatgtttgatgtcataagca-tttttggatctatcacctcaatattaaatg 76  Q
    |||||||||||||||||| || ||||||||||  ||||||||||||||||||    
T  43230853 taatgtttgatgtcataaacactttttggatccttcacctcaatattaaatg 43230802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 33428844 - 33428708
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgac 121  Q
    ||||| || ||||||||||||| || ||||| |  || ||||||||| ||||||||||  ||||||||||||||| |||| || ||||| |||  || |     
T  33428844 gtaatcatatttgatgtcataaacacttttgaacataccacctcaatgttaaatgattcgtaaacattttttaacgaagttggctgaaaaaatatgt-ag 33428746  T
Q  122 aacttaaatattctatgacttaaatgaccaatttataa 159  Q
     | || |||||| |||||||||||||||||||||||||    
T  33428745 cagtttaatattgtatgacttaaatgaccaatttataa 33428708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 29875387 - 29875265
Alignment:
Q  23 taataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgaca 122  Q
    |||| |||||||||| |||||| |||||||||  |||||||||| | |||||||||  ||||||||||||||| ||| | ||  |||| |||| | ||      
T  29875387 taatcatgtttgatgacataagtatttttggacgtatcacctcattgttaaatgatccataaacattttttaataaaattggcagaaaaaatgggcgatg 29875288  T
Q  123 acttaaatattctatgacttaaa 145  Q
    |  ||||||||||||||||||||    
T  29875287 atataaatattctatgacttaaa 29875265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 18704816 - 18704892
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaa 98  Q
    ||||| ||||||| ||||||||||| ||||||| ||| || || |||||||||||||  ||||||| ||||||||||    
T  18704816 gtaattatgtttgttgtcataagcacttttggacctaccatcttaatattaaatgatccataaacactttttaacaa 18704892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 35341882 - 35341955
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaa 95  Q
    ||||| |||||||||||||||||||||||| || |||||||||   | |||||||||  ||||| |||||||||    
T  35341882 gtaatcatgtttgatgtcataagcatttttagacctatcaccttcttgttaaatgatccataaatattttttaa 35341955  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 83621 - 83554
Alignment:
Q  28 atgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaa 95  Q
    |||||||||| ||||| || ||||||| ||| ||||||||| ||||||| |  |||||||||||||||    
T  83621 atgtttgatgacataaacacttttggacctaccacctcaatgttaaatggtcgataaacattttttaa 83554  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 36472465 - 36472545
Alignment:
Q  30 gtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaa 110  Q
    |||||||||||||| || |||| ||||| |||||||||| |||||| ||  || |||| |||||||| |||| | ||||||    
T  36472465 gtttgatgtcataaacacttttagatctctcacctcaatgttaaattatccatgaacactttttaacgaagttgattgaaa 36472545  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 25857033 - 25856980
Alignment:
Q  23 taataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatg 76  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  25857033 taatcatgtttgatgtcataaacatttttggatctaccacctcaatgttaaatg 25856980  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 15831972 - 15832095
Alignment:
Q  32 ttgatgtcataagcatttttggatctat--cacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgacaacttaaa 129  Q
    ||||| ||||||||| ||||||| ||||  |||||||||||| |||| | |||||||| ||||| || |||| | ||||||  |||||| |||   ||||    
T  15831972 ttgatatcataagcacttttggacctataccacctcaatatttaatggtctataaacaattttttacgaagttgattgaaaatatgagtaacagtgtaaa 15832071  T
Q  130 tattctatgacttaaatgaccaat 153  Q
    ||||||||  |||||| |||||||    
T  15832072 tattctataccttaaaagaccaat 15832095  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 23441586 - 23441509
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagt 101  Q
    ||||| ||||||||||||| |  ||||||||||| || || |||||| ||||||||| |||||| | |||||||||||||    
T  23441586 gtaatcatgtttgatgtcaaa--catttttggatttaccatctcaatgttaaatgatctataaatactttttaacaaagt 23441509  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 15831884 - 15831949
Alignment:
Q  31 tttgatgtcataagcatttttggatctat--cacctcaatattaaatgatttataaacatttttta 94  Q
    ||||||||||||| || ||||||| ||||  ||||||||||||||||| | |||||||| ||||||    
T  15831884 tttgatgtcataaacacttttggacctataccacctcaatattaaatggtctataaacagttttta 15831949  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 48547021 - 48547094
Alignment:
Q  28 atgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagt 101  Q
    |||||||||||||||| ||  |||||| ||||||||||||| ||||||  | |||| ||| |||||||| ||||    
T  48547021 atgtttgatgtcataaacacatttggagctatcacctcaatgttaaatagtctatagacactttttaacgaagt 48547094  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 48685896 - 48685949
Alignment:
Q  48 ttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagt 101  Q
    ||||||| ||||||| ||| |||||||||||| ||||||| ||||||| |||||    
T  48685896 ttttggacctatcacttcactattaaatgattcataaacactttttaataaagt 48685949  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 508164 - 508076
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaa 110  Q
    ||||| |||||||||||||||| |||||||||| ||| || || ||  ||||||| | |||||||| |||||||| |||| || |||||    
T  508164 gtaatcatgtttgatgtcataaacatttttggacctaccatcttaacgttaaatggtctataaacactttttaacgaagttggctgaaa 508076  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 11751868 - 11751744
Alignment:
Q  29 tgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaacattttttaacaaagtcggttgaaataatgagtgacaacttaa 128  Q
    ||||||||||||||| || ||||||| ||| || || ||| ||||||| | |||||||| |||||||| |||| || |||||  |||  |||||   |||    
T  11751868 tgtttgatgtcataaacacttttggacctaccatcttaatgttaaatggtctataaacactttttaacgaagttggctgaaaagatggatgacagtataa 11751769  T
Q  129 atattctatgacttaaatgaccaat 153  Q
    ||||| |||||| |||| |||||||    
T  11751768 atattatatgacataaaggaccaat 11751744  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 994890 - 994979
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttggatctatcacctcaatattaaatgatttataaaca-ttttttaacaaagtcggttgaaa 110  Q
    ||||| |||||||||||||||| || ||||| | ||| ||| ||||| ||||||| || |||| || ||||||||||| || ||||||||    
T  994890 gtaatcatgtttgatgtcataaacacttttgaacctaccacatcaatgttaaatggttcataagcatttttttaacaacgttggttgaaa 994979  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 16600346 - 16600314
Alignment:
Q  127 aaatattctatgacttaaatgaccaatttataa 159  Q
    ||||||| |||||||||||||||||||||||||    
T  16600346 aaatattttatgacttaaatgaccaatttataa 16600314  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 33401566 - 33401534
Alignment:
Q  22 gtaataatgtttgatgtcataagcatttttgga 54  Q
    ||||| |||||||||||||||||||||||||||    
T  33401566 gtaatcatgtttgatgtcataagcatttttgga 33401534  T

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