View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18516_low_12 (Length: 240)
Name: NF18516_low_12
Description: NF18516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18516_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 31505501 - 31505303
Alignment:
| Q |
19 |
gtaaatccatgatacagcagttaacaataactttgaagaaccatatccgtacatatgtacctacttttcctaacacaaccaaatagtccagtggcaaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505501 |
gtaaatccatgatacagcagttaacaataactttgaagaaccatatccgtacatatgtacctacttttcctaacacaaccaaatagtccagtggcaaatt |
31505402 |
T |
|
| Q |
119 |
ggcttttaaggaacaactgaacatgttgatatggattgacaaccacaattaacaaataaaaaggagtggacctaatattagcactgcttatcatatata |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505401 |
ggcctttaaggaacaactgaacatgttgatatggattgacaaccacaattaacaaataaaaaggagtggacctaatattagcactgcttatcatatata |
31505303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 34497092 - 34497149
Alignment:
| Q |
154 |
ttgacaaccacaattaacaaataaaaaggagtggacctaatattagcactgcttatca |
211 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
34497092 |
ttgaaaaccacaattaacaaataaaaagaagtggacctaatgttagcactgcttatca |
34497149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 27608640 - 27608680
Alignment:
| Q |
154 |
ttgacaaccacaattaacaaataaaaaggagtggacctaat |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27608640 |
ttgaaaaccacaattaacaaataaaaaggagtggacctaat |
27608680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University