View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18516_low_14 (Length: 233)
Name: NF18516_low_14
Description: NF18516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18516_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 26225615 - 26225793
Alignment:
| Q |
50 |
aactcaggatatataatcaaaagcaattgttaccttaacatgaactgacgtcattcctgctactattaaca-----ataaacaataa-----acatcttt |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||| | ||||| || |
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| T |
26225615 |
aactcaggatatataatcaaaagcaattgttaccttaacatgaactgacgtcattcctgctactattatcactttcatataaaatcatagatacatcctt |
26225714 |
T |
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| Q |
140 |
cataatcatcataatcaaaaccataatcgtattcgctgttgcaataatcatactcataaccataatcataatcataatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26225715 |
cataatcatcataatcaaaaccataatcgtattcgctgttgcaataatcatactcataaccataatcataatcataatt |
26225793 |
T |
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