View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18516_low_2 (Length: 563)
Name: NF18516_low_2
Description: NF18516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18516_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 9 - 534
Target Start/End: Original strand, 30958870 - 30959396
Alignment:
| Q |
9 |
gattattctcaataataaatgttgtaactttacaaatatcttgtcttatttatctgcctactttgttgccacagtaaatttcctctatcaatcatattgg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30958870 |
gattattctcaataataaatgttgtaactttacaaacatcttgtcttatttatctgcctactttgttgccacagtaaatttcctctatcaatcatattgg |
30958969 |
T |
|
| Q |
109 |
ttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaacta-gggcctttgataattttcaggtagataatgaatattgat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30958970 |
ttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactaagggcctttgataattttcaggtagataatgaatattgat |
30959069 |
T |
|
| Q |
208 |
ttaatacttgttaaatgttgcaaaataattgaaattcatcccctgaattgttgtgaaatctctttagtttgtgaatttcgcggaaatcatgtcaaacaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30959070 |
ttaatacttgttaaatgttgcaaaataattgaaattcatcccctgaattgttgtgaaatctctttagtttgtgaatttcgcggaaatcatgtcaaacaac |
30959169 |
T |
|
| Q |
308 |
atttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctcagtataagtataaggccgcagtagcgcttggtctactag |
407 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30959170 |
atttctcttacacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctcagtataagtataaggccgcagcagcgcttggtctactag |
30959269 |
T |
|
| Q |
408 |
ggtaagattatgattcattaccttcagtgttattctctattatttttcatattgaatnnnnnnngagtctcaagttcatttctgtcaaaaataattgtta |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30959270 |
ggtaagattatgattcattaccttcagtgttattctctattatttttcatattgaataaaaaaagagtctcaagttcatttctgtcaaaaataattgtta |
30959369 |
T |
|
| Q |
508 |
atatttgtgcttgttatttatctcaaa |
534 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30959370 |
atatttgtgcttgttatttatctcaaa |
30959396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 30955067 - 30955172
Alignment:
| Q |
41 |
caaatatcttgtcttatttatctgcctactttgttgccacagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatg |
140 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
30955067 |
caaatatcttgtcttatttatctgcttaatttgt---cacagaaaatttcctctttcaatcatattggttggtgttggagatggaccttgggacatggtg |
30955163 |
T |
|
| Q |
141 |
aaggagttt |
149 |
Q |
| |
|
||||||||| |
|
|
| T |
30955164 |
aaggagttt |
30955172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 376
Target Start/End: Complemental strand, 11688939 - 11688829
Alignment:
| Q |
266 |
tctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatccctt |
365 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||| || | ||| |||||||||||| ||||||||||| || | |||||| ||| |||| |||| |
|
|
| T |
11688939 |
tctctttagtttgtgaatttcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattcctt |
11688840 |
T |
|
| Q |
366 |
ctcagtataag |
376 |
Q |
| |
|
||||||||||| |
|
|
| T |
11688839 |
ctcagtataag |
11688829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 11689147 - 11689036
Alignment:
| Q |
79 |
acagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactagggcctttga |
178 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||| || ||| || ||||||||| || | ||||| || |
|
|
| T |
11689147 |
acagtaagcttcctctttcaattatattggttggtgttggagatggaccatgggacatgatgaaagaatttgacgataatattccatctcgtgccttcga |
11689048 |
T |
|
| Q |
179 |
taattttcaggt |
190 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
11689047 |
taatttccaggt |
11689036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 7474121 - 7474234
Alignment:
| Q |
78 |
cacagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactagggcctttg |
177 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| | |||||||| | |
|
|
| T |
7474121 |
cacagtaaatttcctctttcgatcatattggttggtgttggagatggaccttgggacatgatgaaggagtttgatgacaatatgccagccagggccttcg |
7474220 |
T |
|
| Q |
178 |
ataattttcaggta |
191 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7474221 |
ataattttcaggta |
7474234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 269 - 376
Target Start/End: Original strand, 7474336 - 7474443
Alignment:
| Q |
269 |
ctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctc |
368 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| || |||||| ||| ||||||||||||||||||||||||||||| |||||| ||| |||| ||||||| |
|
|
| T |
7474336 |
ctttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgatggaaattccttctc |
7474435 |
T |
|
| Q |
369 |
agtataag |
376 |
Q |
| |
|
|||||||| |
|
|
| T |
7474436 |
agtataag |
7474443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 44131152 - 44131205
Alignment:
| Q |
89 |
tcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaa |
142 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
44131152 |
tcctctctcaattattttggttggagttggagatggaccatgggacgagatgaa |
44131205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University