View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18516_low_3 (Length: 524)
Name: NF18516_low_3
Description: NF18516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18516_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 516
Target Start/End: Original strand, 2153912 - 2154399
Alignment:
| Q |
16 |
aagagcacatacaaatgtacttacacaatatggtccacaacgacaatagtacatcaacaatatgttactaattcttttgtttaatttttccatgaacatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2153912 |
aagagcacatacaaatgtacttacacaatatggtccacaacgacaatagtacatcaacaatatgttactaattcttttgtttaatttttccatgaacatc |
2154011 |
T |
|
| Q |
116 |
tatgagcttataaggatttttccataaaatttgaaaaaaaaaannnnnnnnnnnnnnnaaggagaatgttagtaataattaaagtggcgttaatagtcat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2154012 |
tatgagcttataaggatttttccataaaatttgaaaaaaaaa-----------gggggaaggagaatgttagt--taattaaagtggcgttaatagtcat |
2154098 |
T |
|
| Q |
216 |
tttacaatcgcgtctgatgggatttgaattccggcccttaaagttaaaaggtcaaactttcaccgctgaaccgacacctcacaaatagaaaaccataatc |
315 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2154099 |
tttacaattgcgcctgatgggatttgaattccggcccttaaagttaaaaggtcaaactttcaccgctgaaccaacacctcacaaatagaaaaccataatc |
2154198 |
T |
|
| Q |
316 |
ttattcgaacaagaactaatcatcaaaatggaaccaaattaagaaacattattaatacctgtccattctttccttgagtttcaacaagaacttttcatta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2154199 |
ttattcgaacaagaactaatcatcaaaatggaaccaaattaagaaatattattaatacctgtccattctttccttgagtttcaacaagaacttttcatta |
2154298 |
T |
|
| Q |
416 |
tcttcttctgctattttcacaagtctatctaacaaggctcttttttctgttgattcaagttgaatggtctcaacatcttttccttctccttctcctttgc |
515 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2154299 |
tcttcttctgctattttcacaagtctagctaacaaggctcttttttctgttgattcaagttgaatggtctcaacatcttttccttttccttctcctttgc |
2154398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 370 - 446
Target Start/End: Original strand, 2166676 - 2166752
Alignment:
| Q |
370 |
atacctgtccattctttccttgagtttcaacaagaacttttcattatcttcttctgctattttcacaagtctatcta |
446 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||| |
|
|
| T |
2166676 |
atacctttcgattctttccttgagtttcaacaagaacttttcgttatcttcttcagcaattttcacaagtctctcta |
2166752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 2872077 - 2872025
Alignment:
| Q |
371 |
tacctgtccattctttccttgagtttcaacaagaacttttcattatcttcttc |
423 |
Q |
| |
|
||||| || ||||||||||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
2872077 |
tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttc |
2872025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University