View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18516_low_5 (Length: 450)
Name: NF18516_low_5
Description: NF18516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18516_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 2377398 - 2377826
Alignment:
| Q |
18 |
aattattttcaaagactaaaatggttgttggtcggattttcgcgagttctatcctataaactactcgccgaaaacataatctcgtgaatctttcacaaat |
117 |
Q |
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| T |
2377398 |
aattattttcaaagactaaaatgattgttggtcggattttcgcgagttctatcctataaactactccccgaaaacataatctcgtgaatctttcacaaat |
2377497 |
T |
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| Q |
118 |
taagatgcgtacggcgtatgtacatataaaatgttgggattttcacatagaaagaagatattataagggaacccatgaaccatagtaagatccagcaatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377498 |
taagatgcgtacggcgtatgtacatataaaatgttgggattttcacatagaaagaagatattataagggaacccatgaaccatagtaagatccagcaatg |
2377597 |
T |
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| Q |
218 |
cattcatgatatcgagatgtttgtatattggaagggaaaagacaacctactaaatgcttcaaaagaataagaaagcattttctccttcaatcgtgtacta |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377598 |
cattcatgatatcgagatgtttgtatattggaaaggaaaagacaacctactaaatgcttcaaaagaataagaaagcattttctccttcaatcgtgtacta |
2377697 |
T |
|
| Q |
318 |
at-aacatattaaatatagaatattgatataaaatccatttaaatattcagccttaagtgattagtgtcagatcaatccaattaaattaagcttggaggt |
416 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377698 |
ataaacatattaaatatagaatattgatataaaattcatttaaatattcagccttaagtgattagtgtcagatcaatccaattaaattaagcttggaggt |
2377797 |
T |
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| Q |
417 |
ttatcaaagtccttaacacctttgcttct |
445 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
2377798 |
ttatcaaagtccttaacacctttggttct |
2377826 |
T |
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