View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18517_high_1 (Length: 661)

Name: NF18517_high_1
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18517_high_1
NF18517_high_1
[»] chr7 (11 HSPs)
chr7 (203-533)||(11381246-11381591)
chr7 (202-537)||(11404642-11404997)
chr7 (13-103)||(11381691-11381781)
chr7 (206-419)||(3940197-3940411)
chr7 (13-89)||(11405104-11405180)
chr7 (597-645)||(11381164-11381212)
chr7 (338-390)||(27866871-27866922)
chr7 (318-383)||(5279733-5279798)
chr7 (338-383)||(27543686-27543730)
chr7 (339-411)||(5283315-5283387)
chr7 (597-645)||(11404564-11404612)
[»] chr8 (5 HSPs)
chr8 (20-103)||(2870171-2870254)
chr8 (202-268)||(2870000-2870068)
chr8 (45-87)||(18701107-18701149)
chr8 (202-251)||(28637368-28637417)
chr8 (326-382)||(18700844-18700900)
[»] scaffold0013 (3 HSPs)
scaffold0013 (202-293)||(62483-62574)
scaffold0013 (28-103)||(62678-62752)
scaffold0013 (338-448)||(86869-86979)
[»] chr3 (3 HSPs)
chr3 (11-103)||(13825380-13825474)
chr3 (204-309)||(13825166-13825273)
chr3 (67-103)||(54315264-54315300)
[»] chr2 (6 HSPs)
chr2 (36-103)||(26172823-26172890)
chr2 (37-103)||(20725626-20725691)
chr2 (44-103)||(21833617-21833676)
chr2 (45-87)||(15738151-15738193)
chr2 (47-101)||(29902389-29902443)
chr2 (326-382)||(15737888-15737944)
[»] scaffold0097 (1 HSPs)
scaffold0097 (37-103)||(29455-29520)
[»] chr6 (1 HSPs)
chr6 (338-383)||(19802598-19802644)
[»] chr4 (3 HSPs)
chr4 (338-383)||(39866128-39866173)
chr4 (338-383)||(43036441-43036485)
chr4 (45-101)||(16347023-16347079)
[»] scaffold0079 (1 HSPs)
scaffold0079 (45-101)||(45782-45838)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 203 - 533
Target Start/End: Complemental strand, 11381591 - 11381246
Alignment:
Q  203 aaattggatgaaaatgagtgaaaaa-tgtgttcaaaatagtatgtataaacatgttcaaacgtggggaataagggaaagagagagctattggaatttgaa 301  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  11381591 aaattggatgaaaatgagtgaaaaaatgtgttcaaaatagtatgtataaacatgttcaaacgtggggaaaaagggaaggagaaagctattggaatttgaa 11381492  T
Q  302 ctaggaacacaacaggagttgactactgctggctgtagcggt---------------agttaactgctgccggatcatccaacggtagttaactacctct 386  Q
    | |||||| |||||| |||| ||||||||||||| |||||||               |||||||||||||| ||||||||||||||||||||||||||||    
T  11381491 ccaggaacgcaacagtagttaactactgctggctatagcggtgctgacctcaacgatagttaactgctgcccgatcatccaacggtagttaactacctct 11381392  T
Q  387 gaggacaaagtcgtattttccatgtgttaatagaaacttcttaatatcaaataagcaattttcttactctttagtcatgcatgcagtgcaggacctatgt 486  Q
    |||||||||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11381391 gaggacaaagtcatattttccatgtgttaataggaagttcttaatgtcaaaaaagcaattttcttactctttagtcatgcatgcattgcaggacctatgt 11381292  T
Q  487 tggagagataaaaaacatgactggcagggcttagaccccgtttaacc 533  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  11381291 tggagagataaaaaa-atgactggcagggcttaggccccgtttaacc 11381246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 202 - 537
Target Start/End: Complemental strand, 11404997 - 11404642
Alignment:
Q  202 gaaattggatgaaaatgagtgaaaaa-tgtgttcaaaatagtatgtataaacatgttcaaacgtggggaataagggaaagagagagctattggaatttga 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  11404997 gaaattggatgaaaatgagtgaaaaaatgtgttcaaaatagtatgtataaacatgttcaaacgtggggaaaaagggaaggagaaagctattggaatttga 11404898  T
Q  301 actaggaacacaacaggagttgactactgc----tggctgtagc---------------ggtagttaactgctgccggatcatccaacggtagttaacta 381  Q
    || |||||  |||||| |||| |||| | |    ||||||||||               |||||||||||||||||||||||||||||| ||| ||||||    
T  11404897 accaggaatgcaacagtagttaactattacatactggctgtagcagtgctgacctcagcggtagttaactgctgccggatcatccaacgataggtaacta 11404798  T
Q  382 cctctgaggacaaagtcgtattttccatgtgttaatagaaacttcttaatatcaaataagcaattttcttactctttagtcatgcatgcagtgcaggacc 481  Q
    ||||| |||||||||| ||||||||||||||||||||| || |||||||| || || ||||||||||||||||| ||||||||||||| |||| ||||||    
T  11404797 cctctcaggacaaagttgtattttccatgtgttaataggaagttcttaatgtctaaaaagcaattttcttactc-ttagtcatgcatgtagtggaggacc 11404699  T
Q  482 tatgttggagagat-aaaaaacatgactggcagggcttagaccccgtttaaccacac 537  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  11404698 tatgttggagagataaaaaaacatgactggcagggcttaggccccgtttaaccacac 11404642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 11381781 - 11381691
Alignment:
Q  13 taggcagcagggttgatcattaggtttttatatgtacattttgactttgatgacggtgatgtattattatgacattattcataccttgtga 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11381781 taggcagcagggttgatcattaggtttttttatgtacattttgactttgatgatggtgatgtattattatgacattattcataccttgtga 11381691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 206 - 419
Target Start/End: Original strand, 3940197 - 3940411
Alignment:
Q  206 ttggatgaaaatgagtgaaa-aatgtgttcaaaa-tagtatgtataaacatgttcaaacgtggggaataagggaaagagagagctattggaatttgaact 303  Q
    |||||||||||||| ||||| ||||| ||||||| |||||||||||| ||||||| || |||||||| ||||||| |||| || |  || || ||||||     
T  3940197 ttggatgaaaatgattgaaataatgttttcaaaaatagtatgtataa-catgttcgaatgtggggaaaaagggaaggagaaagttgctgaaaattgaacc 3940295  T
Q  304 aggaacacaacaggagttgactactgctggctgtagcggtagttaactgctgccggatcatccaacggtagttaactacctctgaggacaaagtcgtatt 403  Q
    | ||||  |  || |||| ||||||||||||||||||||||||| ||||||| || ||| |||||||||| |||||||||||||| || ||| | |||||    
T  3940296 aagaacgtagtagtagttaactactgctggctgtagcggtagtttactgctgtcgaatcttccaacggtaattaactacctctgaagataaatttgtatt 3940395  T
Q  404 ttccatgtgttaatag 419  Q
    |||||||| |||||||    
T  3940396 ttccatgttttaatag 3940411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 11405180 - 11405104
Alignment:
Q  13 taggcagcagggttgatcattaggtttttatatgtacattttgactttgatgacggtgatgtattattatgacatta 89  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  11405180 taggcagcagggttgatcattaggtttttttatgtacattttgactttgatgatggtgatgtattattatgacatta 11405104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 645
Target Start/End: Complemental strand, 11381212 - 11381164
Alignment:
Q  597 taataatttgaacaaatttactatatatgcagcaatttacctaatttct 645  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||||||    
T  11381212 taattatttgaacaaattaactatatatgcagcaatttccctaatttct 11381164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 27866922 - 27866871
Alignment:
Q  338 agcggtagttaactgctgccggatcatccaacggtagttaactacctctgagg 390  Q
    |||||||||||||||||||||| || | |||||||||||||||||| ||||||    
T  27866922 agcggtagttaactgctgccgggtc-ttcaacggtagttaactaccgctgagg 27866871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 5279798 - 5279733
Alignment:
Q  318 agttgactactgctggctgtagcggtagttaactgctgccggatcatccaacggtagttaactacc 383  Q
    |||| ||||| | |||| |||||||||||||||||| | |||||   |||||||||||||||||||    
T  5279798 agttaactaccgttggccgtagcggtagttaactgcagtcggatatgccaacggtagttaactacc 5279733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 27543686 - 27543730
Alignment:
Q  338 agcggtagttaactgctgccggatcatccaacggtagttaactacc 383  Q
    ||||||||||||||||||||||||| | |||| |||||||||||||    
T  27543686 agcggtagttaactgctgccggatcct-caacagtagttaactacc 27543730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 5283315 - 5283387
Alignment:
Q  339 gcggtagttaactgctgccggatcatccaacggtagttaactacctctgaggacaaagtcgtattttccatgt 411  Q
    |||| |||||||||||| |||||   ||||||||||||||||||| | || ||||||   |||||||||||||    
T  5283315 gcggcagttaactgctgtcggatgtgccaacggtagttaactaccgccgaagacaaatgagtattttccatgt 5283387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 597 - 645
Target Start/End: Complemental strand, 11404612 - 11404564
Alignment:
Q  597 taataatttgaacaaatttactatatatgcagcaatttacctaatttct 645  Q
    |||| ||||||||||||| ||||||| ||||||| ||| ||||||||||    
T  11404612 taattatttgaacaaattaactatatttgcagcattttccctaatttct 11404564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 2870254 - 2870171
Alignment:
Q  20 cagggttgatcattaggtttttatatgtacattttgactttgatgacggtgatgtattattatgacattattcataccttgtga 103  Q
    ||||||||||||||||| ||||  ||||||||||||||||||| |  ||||||||||||||||||||| |||  ||||||||||    
T  2870254 cagggttgatcattaggctttttaatgtacattttgactttgacggtggtgatgtattattatgacatgatttgtaccttgtga 2870171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 2870068 - 2870000
Alignment:
Q  202 gaaattggatgaaaatgagtgaaaaa--tgtgttcaaaatagtatgtataaacatgttcaaacgtgggg 268  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||| ||||||    
T  2870068 gaaattggatgaaaatgagtgaaaaacatgtgttcaaaatattatgtataaacatgatcaaatgtgggg 2870000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 18701149 - 18701107
Alignment:
Q  45 tgtacattttgactttgatgacggtgatgtattattatgacat 87  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  18701149 tgtacattttgactatgatgaaggtgatgtattattatgacat 18701107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 28637417 - 28637368
Alignment:
Q  202 gaaattggatgaaaatgagtgaaaaatgtgttcaaaatagtatgtataaa 251  Q
    ||||||||||||||||  | |||||||||| |||||||||||||||||||    
T  28637417 gaaattggatgaaaattggagaaaaatgtggtcaaaatagtatgtataaa 28637368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 18700900 - 18700844
Alignment:
Q  326 actgctggctgtagcggtagttaactgctgccggatcatccaacggtagttaactac 382  Q
    ||||||| || ||||||||||||||||||||||| |    |||||||||||||||||    
T  18700900 actgctgactttagcggtagttaactgctgccggcttcctcaacggtagttaactac 18700844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 62574 - 62483
Alignment:
Q  202 gaaattggatgaaaatgagtgaaaaa-tgtgttcaaaatagtatgtataaacatgttcaaacgtggggaataagggaaagagagagctattgg 293  Q
    |||||||||||||||||| ||||||| | |||| ||||| ||||||||||||| ||||||| |||||||| ||||||| |||| |||||||||    
T  62574 gaaattggatgaaaatgattgaaaaaatatgtttaaaatggtatgtataaacaagttcaaatgtggggaaaaagggaaggaga-agctattgg 62483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 62752 - 62678
Alignment:
Q  28 atcattaggtttttatatgtacattttgactttgatgacggtgatgtattattatgacattattcataccttgtga 103  Q
    ||||||||| |||| |||||||||||||||| || ||  |||||||||||||||||||||| ||| ||||||||||    
T  62752 atcattaggcttttttatgtacattttgactatggtgctggtgatgtattattatgacatt-ttcgtaccttgtga 62678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 448
Target Start/End: Original strand, 86869 - 86979
Alignment:
Q  338 agcggtagttaactgctgccggatcatccaacggtagttaactacctctgaggacaaagtcgtattttccatgtgttaatagaaacttcttaatatcaaa 437  Q
    |||||||||||| || || |||||   ||||||||||||||||||| ||| || |||  | ||||||||||||||||| ||| ||||| || || |||||    
T  86869 agcggtagttaattgttgtcggatataccaacggtagttaactaccgctgtgggcaattttgtattttccatgtgttattaggaacttattgatgtcaaa 86968  T
Q  438 taagcaatttt 448  Q
     ||| ||||||    
T  86969 aaagaaatttt 86979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 13825474 - 13825380
Alignment:
Q  11 cataggcagcagggttgat---cattaggtttttatatgtacattttgactttgatgacggtgatgtattattatgacattattcataccttgtga 103  Q
    ||||||||| |||||||||   |||||||||||| |||||||| ||||||| |||||| | |||||||||||||| ||||| ||| ||||||||||    
T  13825474 cataggcagtagggttgattatcattaggtttttttatgtacagtttgactatgatgatgatgatgtattattattacatt-ttcgtaccttgtga 13825380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 204 - 309
Target Start/End: Complemental strand, 13825273 - 13825166
Alignment:
Q  204 aattggatgaaaatgagtgaaaaa-tgtgttcaaaatagtatgtat-aaacatgttcaaacgtggggaataagggaaagagagagctattggaatttgaa 301  Q
    ||||||||||||| |||||||||| | |||||||||| |||||||| |||||||  |||| |||||||| || |||| |||| ||||  ||||| |||||    
T  13825273 aattggatgaaaaagagtgaaaaaatttgttcaaaatggtatgtataaaacatggacaaatgtggggaaaaatggaaggagaaagctgctggaaattgaa 13825174  T
Q  302 ctaggaac 309  Q
    | ||||||    
T  13825173 ccaggaac 13825166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 54315300 - 54315264
Alignment:
Q  67 ggtgatgtattattatgacattattcataccttgtga 103  Q
    |||||||||||||||||||||||||| || |||||||    
T  54315300 ggtgatgtattattatgacattattcgtatcttgtga 54315264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 26172823 - 26172890
Alignment:
Q  36 gtttttatatgtacattttgactttgatgacggtgatgtattattatgacattattcataccttgtga 103  Q
    |||||| ||||||||||||||||||  | | |||||||||||||||||||||  ||||||||||||||    
T  26172823 gtttttttatgtacattttgactttttttatggtgatgtattattatgacatgtttcataccttgtga 26172890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 20725626 - 20725691
Alignment:
Q  37 tttttatatgtacattttgactttgatgacggtgatgtattattatgacattattcataccttgtga 103  Q
    ||||| |||||||||||| |||||||||| || |||||||||||||||||| |||| ||||||||||    
T  20725626 tttttttatgtacattttaactttgatgatgg-gatgtattattatgacatcattcgtaccttgtga 20725691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 21833617 - 21833676
Alignment:
Q  44 atgtacattttgactttgatgacggtgatgtattattatgacattattcataccttgtga 103  Q
    |||||||||||||||||||| | ||||||||||||||||| || ||||  ||||||||||    
T  21833617 atgtacattttgactttgataatggtgatgtattattatgccactatttgtaccttgtga 21833676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 15738193 - 15738151
Alignment:
Q  45 tgtacattttgactttgatgacggtgatgtattattatgacat 87  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  15738193 tgtacattttgactatgatgaaggtgatgtattattatgacat 15738151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 29902389 - 29902443
Alignment:
Q  47 tacattttgactttgatgacggtgatgtattattatgacattattcataccttgt 101  Q
    |||||||||||| |||||| |||||||||||||||||||||  ||| ||||||||    
T  29902389 tacattttgactatgatgatggtgatgtattattatgacatgtttcgtaccttgt 29902443  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 15737944 - 15737888
Alignment:
Q  326 actgctggctgtagcggtagttaactgctgccggatcatccaacggtagttaactac 382  Q
    ||||||| || ||||||||||||||||||||||| |    |||||||||||||||||    
T  15737944 actgctgactttagcggtagttaactgctgccggcttcctcaacggtagttaactac 15737888  T

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Target: scaffold0097 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 29455 - 29520
Alignment:
Q  37 tttttatatgtacattttgactttgatgacggtgatgtattattatgacattattcataccttgtga 103  Q
    ||||| |||||||||||| |||||||||| || |||||||||||||||||| |||| ||||||||||    
T  29455 tttttttatgtacattttaactttgatgatgg-gatgtattattatgacatcattcgtaccttgtga 29520  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 19802644 - 19802598
Alignment:
Q  338 agcggtagttaactgctgccggatc-atccaacggtagttaactacc 383  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  19802644 agcggtagttaactgccgccggatcaatccaacggtagttaactacc 19802598  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 39866128 - 39866173
Alignment:
Q  338 agcggtagttaactgctgccggatcatccaacggtagttaactacc 383  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||    
T  39866128 agcggtagttaactgctgccgaatataccaacggtagttaactacc 39866173  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 43036441 - 43036485
Alignment:
Q  338 agcggtagttaactgctgccggatcatccaacggtagttaactacc 383  Q
    |||||||||||||||||||||| || | ||||||||||||||||||    
T  43036441 agcggtagttaactgctgccgggtcct-caacggtagttaactacc 43036485  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 16347079 - 16347023
Alignment:
Q  45 tgtacattttgactttgatgacggtgatgtattattatgacattattcataccttgt 101  Q
    |||||||||||||| ||| || |||||||||||||||| ||||  ||| ||||||||    
T  16347079 tgtacattttgactatgacgatggtgatgtattattattacatgtttcgtaccttgt 16347023  T

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Target: scaffold0079 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 45782 - 45838
Alignment:
Q  45 tgtacattttgactttgatgacggtgatgtattattatgacattattcataccttgt 101  Q
    |||||||||||||| ||| || |||||||||||||||| ||||  ||| ||||||||    
T  45782 tgtacattttgactatgacgatggtgatgtattattattacatgtttcgtaccttgt 45838  T

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