View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18517_high_10 (Length: 250)

Name: NF18517_high_10
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18517_high_10
NF18517_high_10
[»] chr5 (13 HSPs)
chr5 (2-237)||(15532206-15532441)
chr5 (2-237)||(15542388-15542623)
chr5 (4-240)||(33575091-33575326)
chr5 (2-239)||(11988868-11989108)
chr5 (2-107)||(22159881-22159986)
chr5 (2-240)||(34405850-34406088)
chr5 (2-100)||(26711470-26711567)
chr5 (2-100)||(26981207-26981304)
chr5 (27-224)||(7649972-7650169)
chr5 (4-240)||(14616437-14616672)
chr5 (94-225)||(26712439-26712571)
chr5 (94-225)||(26982177-26982309)
chr5 (162-240)||(22159746-22159823)
[»] chr2 (8 HSPs)
chr2 (2-237)||(31528394-31528629)
chr2 (2-240)||(13710072-13710309)
chr2 (1-225)||(40017996-40018219)
chr2 (6-240)||(31626551-31626784)
chr2 (4-240)||(16294900-16295135)
chr2 (4-240)||(23673353-23673588)
chr2 (2-240)||(36326928-36327165)
chr2 (10-105)||(29436003-29436099)
[»] chr6 (16 HSPs)
chr6 (2-240)||(13017195-13017433)
chr6 (4-240)||(22221726-22221959)
chr6 (4-240)||(22247561-22247794)
chr6 (106-240)||(30978321-30978455)
chr6 (2-240)||(14790620-14790858)
chr6 (2-240)||(14795648-14795886)
chr6 (122-240)||(16883677-16883795)
chr6 (27-240)||(15535058-15535270)
chr6 (4-240)||(19664674-19664909)
chr6 (120-240)||(20527286-20527407)
chr6 (66-238)||(15540574-15540744)
chr6 (4-118)||(1838598-1838712)
chr6 (194-240)||(32704452-32704498)
chr6 (181-240)||(1838475-1838535)
chr6 (181-240)||(27649104-27649164)
chr6 (122-185)||(11183962-11184025)
[»] chr3 (7 HSPs)
chr3 (2-240)||(22626318-22626554)
chr3 (2-240)||(11138576-11138812)
chr3 (2-225)||(39563516-39563739)
chr3 (39-140)||(20536379-20536479)
chr3 (53-157)||(35366459-35366562)
chr3 (4-106)||(46731589-46731691)
chr3 (181-240)||(13979488-13979548)
[»] chr7 (16 HSPs)
chr7 (2-240)||(23759615-23759852)
chr7 (1-222)||(11279511-11279731)
chr7 (2-240)||(36222315-36222552)
chr7 (4-240)||(46846320-46846556)
chr7 (2-240)||(33312996-33313233)
chr7 (2-240)||(294866-295100)
chr7 (2-240)||(6967149-6967387)
chr7 (2-241)||(3861913-3862151)
chr7 (2-240)||(17866359-17866597)
chr7 (27-240)||(24783410-24783624)
chr7 (118-240)||(23313382-23313504)
chr7 (103-240)||(17863202-17863338)
chr7 (181-240)||(9765803-9765863)
chr7 (123-240)||(23107989-23108106)
chr7 (2-111)||(17857886-17857996)
chr7 (194-240)||(36843135-36843181)
[»] scaffold0440 (1 HSPs)
scaffold0440 (4-240)||(9865-10101)
[»] chr4 (7 HSPs)
chr4 (2-182)||(12172031-12172212)
chr4 (2-240)||(2541886-2542122)
chr4 (1-240)||(647208-647447)
chr4 (1-240)||(650480-650719)
chr4 (66-240)||(26062762-26062937)
chr4 (188-240)||(26060589-26060641)
chr4 (192-240)||(11649429-11649477)
[»] scaffold0264 (1 HSPs)
scaffold0264 (4-240)||(24193-24426)
[»] chr8 (5 HSPs)
chr8 (1-225)||(12575305-12575528)
chr8 (5-240)||(14418467-14418698)
chr8 (118-242)||(41778864-41778987)
chr8 (161-240)||(13097022-13097100)
chr8 (192-240)||(41836418-41836466)
[»] chr1 (10 HSPs)
chr1 (2-240)||(10764921-10765159)
chr1 (2-240)||(13493264-13493502)
chr1 (2-240)||(1936628-1936868)
chr1 (27-240)||(13495989-13496202)
chr1 (118-240)||(34066346-34066468)
chr1 (117-240)||(16190299-16190421)
chr1 (2-240)||(32505863-32506098)
chr1 (66-240)||(39546244-39546417)
chr1 (119-185)||(8435292-8435358)
chr1 (27-134)||(49716595-49716704)
[»] scaffold0363 (1 HSPs)
scaffold0363 (5-240)||(20-251)
[»] scaffold0567 (1 HSPs)
scaffold0567 (186-240)||(5999-6054)
[»] scaffold0352 (1 HSPs)
scaffold0352 (27-172)||(2649-2795)
[»] scaffold0500 (1 HSPs)
scaffold0500 (193-226)||(2709-2742)
[»] scaffold0063 (1 HSPs)
scaffold0063 (193-226)||(7189-7222)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 15532206 - 15532441
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15532206 atatttggcatgtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 15532305  T
Q  102 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15532306 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaag 15532405  T
Q  202 tatggttaagtccttcgaatcctctaaagttctcct 237  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15532406 tatggttaagtccttcgaatcctctaaagctctcct 15532441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 15542388 - 15542623
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15542388 atatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttaacaatttcattattaaaaagga 15542487  T
Q  102 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15542488 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaag 15542587  T
Q  202 tatggttaagtccttcgaatcctctaaagttctcct 237  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15542588 tatggttaagtccttcgaatcctctaaagctctcct 15542623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 33575326 - 33575091
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatg 103  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  33575326 atttggcaagtgaaccaaattcaatcgaagtaataaaaaattcgttttcacgaggactgtatttaacttctatttagcaattttattattaaaaaggatg 33575227  T
Q  104 tataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaagta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33575226 tataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggttttt-agaaaattgagagaagta 33575128  T
Q  204 tggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||||||||||||  ||| |||||||||    
T  33575127 tggttaagtccttcgaatcctccgaagctctcctatg 33575091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 11988868 - 11989108
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttcta--cttagcaatttcattattaaaaag 99  Q
    ||||||| |||||||||||||||| |||||||||||||| | ||||||| |||||| || ||  ||||||||||  |||||||||||||||| ||| |||    
T  11988868 atatttgacaagtgaatcaaattcaatcgaagtaataaataattcgtttccacgagaaccgttcttaacttctatacttagcaatttcattagtaataag 11988967  T
Q  100 gatgtata--aatttatattggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-ga 195  Q
    || |||||  || ||  || ||| ||||||||||||||||||||||  ||||||||||| |||||||||| |||||  |||| ||||  |||||||| ||    
T  11988968 gacgtatattaaattcaat-ggtcccctaggcagttgagttgatttttgtaacataaacagattaaaaacgataaaagattgatttt--agaaaattaga 11989064  T
Q  196 gagaagtatggttaagtccttcgaatcctctaaagttctcctat 239  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||    
T  11989065 gagaagtaaggttaagaccttcgaatcctccaaagttctcctat 11989108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 22159986 - 22159881
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    ||||||| |||||| | |||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| || | ||||||||    
T  22159986 atatttgacaagtgtaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttctttgtcaaaaagga 22159887  T
Q  102 tgtata 107  Q
    ||||||    
T  22159886 tgtata 22159881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 34406088 - 34405850
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||| | ||||  | ||||||||| ||| ||||||||| | ||| ||||| ||  |||| |||||||  |||||||| |||| |||||||    
T  34406088 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggaccgttgttaatttctactcggcaatttctttatcaaaaagg 34405989  T
Q  101 atgtataaatttatattg-gtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagag 198  Q
    ||||||||||||||||||  |||||||||||||||||||| ||  |||||||||||  |   ||||||||||| | |||| |||| |||| ||| |||||    
T  34405988 atgtataaatttatattgattgccctaggcagttgagttg-ttgtgtaacataaacgtaaataaaacaataaa-agttgg-ttttcagaatattagagag 34405892  T
Q  199 aagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||| ||||| |||||||| |||||||||||||    
T  34405891 aagtatggttaagaccttcaaatcctctgaagttctcctatg 34405850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 26711470 - 26711567
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||||| ||||||| || ||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26711470 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattatcaaaaagg 26711567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 26981207 - 26981304
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||||| ||||||| || ||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26981207 atatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattatcaaaaagg 26981304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 7649972 - 7650169
Alignment:
Q  27 atcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgtataaatttatattg-gtgccc 124  Q
    |||||||||||||| || ||||| ||||||||||| ||  |||| ||||||| | ||||||| |||| |||||||||||||||||||||||||  |||||    
T  7649972 atcgaagtaataaataaattcgtattcacgaggaccgttgttaatttctactcaacaatttctttatcaaaaaggatgtataaatttatattgattgccc 7650071  T
Q  125 taggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtccttcgaatcc 223  Q
    ||||||||||||||| ||| |||||||||||  |   ||||||||||  || | | ||||||||| ||| |||||||||||||||||| | || ||||||    
T  7650072 taggcagttgagttg-ttttgtaacataaacgtaaataaaacaataa--aagttgcttttaagaatattagagagaagtatggttaagacatttgaatcc 7650168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 14616437 - 14616672
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggat 102  Q
    |||||||||||||| ||||  | |||||||||||||| || ||||| | ||||||||| ||  |||| |||||||  |||||||| |||| |||||||||    
T  14616437 atttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaaggat 14616535  T
Q  103 gtataaatttatattg-gtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaa 200  Q
    |||| |||||||||||  | ||||||| |||||||||| ||| |||||||||||  |   ||||||||||  || | | ||||||||| ||| |||||||    
T  14616536 gtatgaatttatattgattaccctaggaagttgagttg-ttttgtaacataaacgtaaataaaacaataa--aagttgattttaagaatattagagagaa 14616632  T
Q  201 gtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||| |||| ||||||||  |||||||||||||    
T  14616633 gtatggttaagacctttgaatcctccgaagttctcctatg 14616672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 225
Target Start/End: Original strand, 26712439 - 26712571
Alignment:
Q  94 aaaaaggatgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaac-tgattaaaaacaataaagaattggtttttaagaaaa 191  Q
    ||||||||||| |||| |||||||| ||||||||| ||||||||||||||| |||||||||||   |||||||| | ||||  |||||||||  ||||||    
T  26712439 aaaaaggatgtgtaaaatttatattagtgccctagacagttgagttgattttgtaacataaacaaaattaaaaatagtaaaagattggtttt--agaaaa 26712536  T
Q  192 t-tgagagaagtatggttaagtccttcgaatcctc 225  Q
    | ||||||||| ||||||||||| |||||||||||    
T  26712537 tctgagagaagaatggttaagtctttcgaatcctc 26712571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 225
Target Start/End: Original strand, 26982177 - 26982309
Alignment:
Q  94 aaaaaggatgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaac-tgattaaaaacaataaagaattggtttttaagaaaa 191  Q
    ||||||||||| |||| |||||||| ||||||||| ||||||||||||||| |||||||||||   |||||||| | ||||  |||||||||  ||||||    
T  26982177 aaaaaggatgtgtaaaatttatattagtgccctagacagttgagttgattttgtaacataaacaaaattaaaaatagtaaaagattggtttt--agaaaa 26982274  T
Q  192 t-tgagagaagtatggttaagtccttcgaatcctc 225  Q
    | ||||||||| ||||||||||| |||||||||||    
T  26982275 tctgagagaagaatggttaagtctttcgaatcctc 26982309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 22159823 - 22159746
Alignment:
Q  162 aaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||| |||||||||| ||||| ||| ||||||| |||||||||| |||| ||||||||  |||||||||||||    
T  22159823 aaaacaataaa-aattggtttt-aagaatattagagagaaatatggttaagacctttgaatcctccgaagttctcctatg 22159746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 31528629 - 31528394
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31528629 atatttggcaagtgaaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 31528530  T
Q  102 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31528529 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaag 31528430  T
Q  202 tatggttaagtccttcgaatcctctaaagttctcct 237  Q
    ||||||||||||||||||||||||||||| ||||||    
T  31528429 tatggttaagtccttcgaatcctctaaagctctcct 31528394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 13710309 - 13710072
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13710309 atatttggcaagtgaaccaaattcaatcgaagtaataaaaa-ttcgtttttacgagaactgtatttaacttctacttagcaatttcattattaaaaagga 13710211  T
Q  102 tgtat-aaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaa-ttgagaga 199  Q
    ||||| |||||||||||| ||||  ||| ||||||||||| || ||||||||||| ||||||||||||||||  |||||||||  |||||| ||||||||    
T  13710210 tgtataaaatttatattgatgcctgaggaagttgagttgagtt-gtaacataaacggattaaaaacaataaaagattggtttt--agaaaatttgagaga 13710114  T
Q  200 agtatggttaagtccttcgaatcctct-aaagttctcctatg 240  Q
    |||||||||||| ||||| |||| ||| |||| |||||||||    
T  13710113 agtatggttaagaccttcaaatcatctgaaagctctcctatg 13710072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 40018219 - 40017996
Alignment:
Q  1 aatatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    ||||||||||||||||| ||||||| |||||||||||||||| || |||||||| |||| || |||||||||| |||| |||||||  ||||||||||||    
T  40018219 aatatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgttttcacaaggagtgcatttaacttcgacttggcaatttttttattaaaaagg 40018120  T
Q  101 atgtat-aaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaag-aaaattgagag 198  Q
    |||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||   | |||  |||||| |||||||||||    
T  40018119 atgtataaaatttatattgatgccctaggcagttgagttgattt-gtaacataaacggattaaaaacaataagagactgg--tttaagaaaaattgagag 40018023  T
Q  199 aagtatggttaagtccttcgaatcctc 225  Q
    ||||||||||||| |||||||||||||    
T  40018022 aagtatggttaagaccttcgaatcctc 40017996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 31626784 - 31626551
Alignment:
Q  6 ttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgta 105  Q
    |||| ||||||| ||||||| |||||||||||||||| |||||||  | |||||||||||| |||||||||||||||||||||||||||||||||||||     
T  31626784 ttggtaagtgaaccaaattcaatcgaagtaataaaaa-ttcgtttcaatgaggactgtatt-aacttctacttagcaatttcattattaaaaaggatgtg 31626687  T
Q  106 taaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactg-attaaaaacaataaagaattggtttttaagaaaat-tgagagaagt 202  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||  | |||||||| ||||||| |||||||||  ||||||| |||||||||     
T  31626686 taaaatttatattggtgccctaggcagttgagttgattttgtaacataaaaggaattaaaaataataaaggattggtttt--agaaaatctgagagaaga 31626589  T
Q  203 atggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||| |||||||||||  ||| |||||||||    
T  31626588 atggttaagtcattcgaatcctccgaagctctcctatg 31626551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 16295135 - 16294900
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggat 102  Q
    |||||||||||||| ||||  | |||||||||||||| ||| ||   | ||||||||| ||  |||| ||||||| ||||||||| ||||  ||| ||||    
T  16295135 atttggcaagtgaaccaaaa-ctatcgaagtaataaataagatcaaatccacgaggaccgttgttaatttctactcagcaatttcgttatcgaaa-ggat 16295038  T
Q  103 gtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaa-taaagaattggtttttaagaaaattgagagaa 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||| | |  |||| |||||||||||||||    
T  16295037 gtataaaatttatattgatgccctaggcagttgagttgattttgtatcataaaccgattaaaaacaaataaagattag--ttttcagaaaattgagagaa 16294940  T
Q  201 gtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  16294939 gtatggttaagtccttcgaatcctccgaagttctcctatg 16294900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 23673353 - 23673588
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggat 102  Q
    |||||||||||||| ||||  | |||||||||||||| || ||||| | ||||||||| ||  |||| ||||||| | ||||||| |||| |||||||||    
T  23673353 atttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcaacaatttctttatcaaaaaggat 23673451  T
Q  103 gtataaatttatattggtgccctaggcagttgagttg--atttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagaga 199  Q
    |||| || ||  |  | |||||||||||||||  |||  |||| |||| |||||| ||||||||||||||||   ||||||||  |||||||| ||||||    
T  23673452 gtattaaattcaag-gttgccctaggcagttggattggcattt-gtaaaataaacggattaaaaacaataaaagtttggtttt--agaaaattagagaga 23673547  T
Q  200 agtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
     ||||||||||| |||||||||||||  |||||||||||||    
T  23673548 tgtatggttaagaccttcgaatcctccgaagttctcctatg 23673588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 36327165 - 36326928
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||||| ||||  | |||||||||||||| || ||||| | ||||||||| ||  ||||||||||||  |||||||| |||| ||||| |    
T  36327165 atatttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactctgcaatttctttatcaaaaaag 36327067  T
Q  101 atgtat-aaatttatattggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gaga 197  Q
    |||||| ||||| | | |  ||||||||| ||||   ||| | || |||| |||||| ||||||||||||||||   ||||||||  |||||||| ||||    
T  36327066 atgtattaaattcaaagt--tgccctaggaagttagattggtatttgtaaaataaacggattaaaaacaataaaagtttggtttt--agaaaattagaga 36326971  T
Q  198 gaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    || ||||||||||| |||| ||||||||  |||||||| ||||    
T  36326970 gatgtatggttaagacctttgaatcctccgaagttctcatatg 36326928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 29436099 - 29436003
Alignment:
Q  10 caagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgta 105  Q
    |||||| ||||||  | ||||||||||||| ||||||||| | ||||||||| ||  |||| ||||||||||||| ||| |||  | ||||||||||    
T  29436099 caagtgtatcaaaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgta 29436003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 13017195 - 13017433
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13017195 atatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactatatttaacttctacttagcaatttcattattaaaaagga 13017294  T
Q  102 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13017295 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttcagaaaattgagagaag 13017394  T
Q  202 tatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  13017395 tatggttaagtccttcgaatcctccaaagctctcctatg 13017433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 22221959 - 22221726
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatg 103  Q
    |||||||||||| | ||||  | ||||||||| ||| || ||||||| |||||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  22221959 atttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaaaaaggatg 22221860  T
Q  104 tataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaagta 203  Q
    ||||||||  ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |    
T  22221859 tataaattattattggtgccctaggcagttgagttgatttagta--ataaactaattaaaaacaataaagaattggttttt-agaaaattgagagaagca 22221763  T
Q  204 tggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||||||||||||  ||| |||||||||    
T  22221762 tggttaagtccttcgaatcctccgaagctctcctatg 22221726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 22247794 - 22247561
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatg 103  Q
    |||||||||||| | ||||  | ||||||||| ||| || ||||||| |||||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  22247794 atttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaaaaaggatg 22247695  T
Q  104 tataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaagta 203  Q
    ||||||||  ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |    
T  22247694 tataaattattattggtgccctaggcagttgagttgatttagta--ataaactaattaaaaacaataaagaattggttttt-agaaaattgagagaagca 22247598  T
Q  204 tggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||||||||||||  ||| |||||||||    
T  22247597 tggttaagtccttcgaatcctccgaagctctcctatg 22247561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 30978321 - 30978455
Alignment:
Q  106 taaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaagtatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30978321 taaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaagtatg 30978420  T
Q  206 gttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||||||||| |||| |||||||||    
T  30978421 gttaagtccttcgaatcctccaaagctctcctatg 30978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 14790858 - 14790620
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||| | ||||  | ||||||||| ||| ||||||||| | ||||||||| ||  |||| |||||||  |||||||| |||| |||||||    
T  14790858 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaagg 14790759  T
Q  101 atgtataaatttatattg-gtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagag 198  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||| |||| |||| ||| |||||    
T  14790758 atgtataaatttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaataaa-agttgg-ttttcagaatattagagag 14790662  T
Q  199 aagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  14790661 aagtatggttaagaccttcgaatcctctgaagttctcctatg 14790620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 14795886 - 14795648
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||| | ||||  | ||||||||| ||| |||||||||    |||||||| ||  |||| |||||||  |||||||| |||| |||||||    
T  14795886 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtacctacgaggaccgttgttaatttctactcggcaatttctttatcaaaaagg 14795787  T
Q  101 atgtataaatttatattg-gtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagag 198  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||| |||| |||| ||| |||||    
T  14795786 atgtataaatttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaataaa-agttgg-ttttcagaatattagagag 14795690  T
Q  199 aagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  14795689 aagtatggttaagaccttcgaatcctctgaagttctcctatg 14795648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 16883795 - 16883677
Alignment:
Q  122 ccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtccttcga 219  Q
    |||||||||||||| |||||||  |||||||||||  |||||||||||||||  |||||||||  |||||||| |||||||||||||||||| | |||||    
T  16883795 ccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggtttt--agaaaattagagagaagtatggttaagacattcga 16883698  T
Q  220 atcctctaaagttctcctatg 240  Q
    |||||   |||||||||||||    
T  16883697 atccttcgaagttctcctatg 16883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 15535270 - 15535058
Alignment:
Q  27 atcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgtataaatttatattggtgccct 125  Q
    |||||||||||||| || ||||| | ||||||||| ||  |||||||||||| ||| ||||| |||| ||||||||||||| || ||  |  | ||||||    
T  15535270 atcgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactcagccatttctttataaaaaaggatgtattaaattcaag-gttgccct 15535172  T
Q  126 aggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtccttcgaatcct 224  Q
    |||||||||||||||||| |||| | |||  ||||||||||||||||   ||||||||  | ||||||  || || ||||||||||| ||||| ||||||    
T  15535171 aggcagttgagttgattttgtaaaacaaatagattaaaaacaataaaagtttggtttt--acaaaattaaagtgatgtatggttaagaccttcaaatcct 15535074  T
Q  225 ctaaagttctcctatg 240  Q
    |  ||||| |||||||    
T  15535073 ccgaagttttcctatg 15535058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 19664674 - 19664909
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggat 102  Q
    |||||||||||||| ||||  | |||||||||||||| || || || | ||||||||| ||  || | ||||||| | ||||||| |||| |||||||||    
T  19664674 atttggcaagtgaaccaaaa-ctatcgaagtaataaataaatttgtatccacgaggaccgttgtttatttctactcaacaatttctttatcaaaaaggat 19664772  T
Q  103 gtataaatttatattggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaa 200  Q
    |||| || ||  |  | |||||||||||||||  ||| | || |||| |||||| ||||||||||||||||   |||||||  ||||||||| ||||||     
T  19664773 gtattaaattcaag-gttgccctaggcagttggattggtatttgtaaaataaacggattaaaaacaataaaagtttggttt--aagaaaattagagagat 19664869  T
Q  201 gtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||| |||||||||||||  |||||||||||||    
T  19664870 gtatggttaagaccttcgaatcctccgaagttctcctatg 19664909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 20527286 - 20527407
Alignment:
Q  120 tgccctaggcagttgagttgattta-gtaacataaac-tgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcctt 216  Q
    |||||||||||||||| |||||||  ||||| ||||| | | ||||||||||||| | |||||||| ||||| ||| |||||||||||||||||| ||||    
T  20527286 tgccctaggcagttgaattgatttttgtaacgtaaacataaataaaaacaataaa-agttggtttt-aagaatattagagagaagtatggttaagacctt 20527383  T
Q  217 cgaatcctctaaagttctcctatg 240  Q
    |||||||||  |||||||||||||    
T  20527384 cgaatcctccgaagttctcctatg 20527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 15540744 - 15540574
Alignment:
Q  66 ttaacttctacttagcaatttcattattaaaaaggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaa 165  Q
    |||||||||||| |||||||||  ||| ||||||||||||| || ||  |  | | ||||||||||||||||||||||  ||| |||||  |||||||||    
T  15540744 ttaacttctactcagcaatttctatatcaaaaaggatgtattaaattcaag-gtttccctaggcagttgagttgattttctaaaataaagggattaaaaa 15540646  T
Q  166 caataaagaattggtttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagttctccta 238  Q
    |||||||   || |||||  ||||||||  |||||  |||||||||| |||||||||||||  |||||||||||    
T  15540645 caataaaagtttagtttt--agaaaattaaagagatttatggttaagaccttcgaatcctccgaagttctccta 15540574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 1838712 - 1838598
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggat 102  Q
    |||||||||||||| |||| |  |||||||||||||| || ||||| | ||| ||||| ||  |||| |||||||  |||||||| |||| |||||||||    
T  1838712 atttggcaagtgaaccaaaatt-atcgaagtaataaataaattcgtatccacaaggaccgttgttaatttctactcggcaatttctttatcaaaaaggat 1838614  T
Q  103 gtataaatttatattg 118  Q
    ||||||||||||||||    
T  1838613 gtataaatttatattg 1838598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 32704452 - 32704498
Alignment:
Q  194 gagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||    
T  32704452 gagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 32704498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 1838535 - 1838475
Alignment:
Q  181 ttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||||  |||||||||||||    
T  1838535 ttttaagaatattagagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 1838475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 27649164 - 27649104
Alignment:
Q  181 ttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||  |||||||||||||    
T  27649164 ttttaagaaaattagagcgaagtatggttaagaccttcgaatcctccgaagttctcctatg 27649104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 11183962 - 11184025
Alignment:
Q  122 ccctaggcagttgagttga-tttagtaacataaactgattaaaaacaataaagaattggttttta 185  Q
    ||||||||||||||||||| ||| |||||||||||  | ||||||||||||| | ||||||||||    
T  11183962 ccctaggcagttgagttgatttttgtaacataaacgtaataaaaacaataaa-agttggttttta 11184025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 22626318 - 22626554
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22626318 atatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 22626417  T
Q  102 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaag 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  22626418 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggattt--agaaaattgagagaag 22626515  T
Q  202 tatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  22626516 tatggttaagtccttcgaatcctccaaagctctcctatg 22626554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 11138576 - 11138812
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11138576 atatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 11138675  T
Q  102 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   || ||||||||||||||||    
T  11138676 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaatatagaattgg--attcagaaaattgagagaag 11138773  T
Q  202 tatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  11138774 tatggttaagtccttcgaatcctccaaagctctcctatg 11138812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 39563516 - 39563739
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||||| ||||||| ||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  39563516 atatttggcaagtgaaccaaattcaatcaaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattataaaaaagga 39563614  T
Q  102 tgtat-aaatttatattggtgccctaggcagttgagttgatttagtaacataaac-tgattaaaaacaataaagaattggtttttaagaaaat-tgagag 198  Q
    ||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||   |||||||| | ||||  |||||||||  ||||||| ||||||    
T  39563615 tgtgtaaaatttatattagtgccctaggcagttgagttgattttgtaacataaacaaaattaaaaatagtaaaagattggtttt--agaaaatctgagag 39563712  T
Q  199 aagtatggttaagtccttcgaatcctc 225  Q
    ||| |||||||||||||||||||||||    
T  39563713 aagaatggttaagtccttcgaatcctc 39563739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 20536379 - 20536479
Alignment:
Q  39 aaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgta-taaatttatattggtgccctaggcagttgagt 137  Q
    ||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||   |  ||||||||||||||||| ||    
T  20536379 aaaagatcgtatccacgaggactgtatttaacttctacttagaaatttcattattaaaaaggatgtagtaaatt--caagggtgccctaggcagttgggt 20536476  T
Q  138 tga 140  Q
    |||    
T  20536477 tga 20536479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 35366562 - 35366459
Alignment:
Q  53 acgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgtataaatttatattggtgccctaggcagttgagttgat-ttagtaacat 151  Q
    |||||||| ||  |||||||||||||||||||||||||| |||||||||||||| || || ||  | ||||||||||||| |||||| | || |||||||    
T  35366562 acgaggaccgttgttaacttctacttagcaatttcatta-taaaaaggatgtattaaatttta-ggttgccctaggcagtcgagttggtatttgtaacat 35366465  T
Q  152 aaactg 157  Q
    ||||||    
T  35366464 aaactg 35366459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 46731691 - 46731589
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggat 102  Q
    |||||||||||||| ||||  | ||||||||||| || || || || | ||||||||| ||  |||||||||||| ||||||||| |||| |||||||||    
T  46731691 atttggcaagtgaa-caaaaactatcgaagtaatgaataaatttgtatccacgaggaccgttgttaacttctactcagcaatttctttatcaaaaaggat 46731593  T
Q  103 gtat 106  Q
    ||||    
T  46731592 gtat 46731589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 13979548 - 13979488
Alignment:
Q  181 ttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||| ||| |||||||||||||||||| |||| ||||||||  ||| |||||||||    
T  13979548 ttttaagaatattagagagaagtatggttaagacctttgaatcctccgaagctctcctatg 13979488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 23759615 - 23759852
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  23759615 atatttggcaagtgaaccaaattcaatcgaagtaataaaaagttcgtttctacgaggactgtatttaacttctacttagcaaattcatt-ttaaaaagga 23759713  T
Q  102 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23759714 tgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatcgagagaag 23759813  T
Q  202 tatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  23759814 tatggttaagtccttcgaatcctccaaagctctcctatg 23759852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11279731 - 11279511
Alignment:
Q  1 aatatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    ||||||||||||||||| ||||||| |||||||||||||||| || |||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  11279731 aatatttggcaagtgaaccaaattcaatcgaagtaataaaaattt-gtttccacaaggactatatttaatttctacttagcaatttcattattaaaaagg 11279633  T
Q  101 atgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaac-aataaagaattggtttttaagaaaattgagag 198  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||| |||| ||||||||    
T  11279632 atgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacgaataaag-attggttttt-agaagattgagag 11279535  T
Q  199 aagtatggttaagtccttcgaatc 222  Q
    ||||||||||||||||||||||||    
T  11279534 aagtatggttaagtccttcgaatc 11279511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 36222315 - 36222552
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    ||||||||||| |||| ||||||| || ||||||||||||| ||||||  |||||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  36222315 atatttggcaaatgaaccaaattcaattgaagtaataaaaa-ttcgttaccacgaggattgtatttaatttctacgtagcaatttcattattaaaaagga 36222413  T
Q  102 tgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaa 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||  |||||||||| |||| ||||||||||    
T  36222414 tgtataaaatttatattggtgccctaggcagttgagttgattttctaacataaactgattaaaaacaaagaaagattggttttt-agaagattgagagaa 36222512  T
Q  201 gtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  36222513 gtatggttaagtccttcgaatcctccgaagttctcctatg 36222552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 46846320 - 46846556
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatg 103  Q
    ||||||||||||||||| |||| ||||||||||||||||  | |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46846320 atttggcaagtgaatcagattcaatcgaagtaataaaaatat-gtttccacgaggactgtatttaatttctacttagcaatttcattattaaaaaggatg 46846418  T
Q  104 tat-aaatttatattggtgccctaggcagttgagttgatttagtaacataaactga-ttaaaaacaataaagaattggtttttaagaaaattgagagaag 201  Q
    ||| |||||||||||||||||||||||||||||||||| ||  ||  ||||||||| | ||||||||||||  |||||||||| ||||||||||||||||    
T  46846419 tataaaatttatattggtgccctaggcagttgagttgaattcttattataaactgactaaaaaacaataaaagattggttttt-agaaaattgagagaag 46846517  T
Q  202 tatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||||||||||||||  ||||||| |||||    
T  46846518 tatggttaagtccttcgaatcctccgaagttcttctatg 46846556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 33313233 - 33312996
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||  ||||||| ||||||| |||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33313233 atatttgagaagtgaaacaaattcaatcgaagtaataaaaa-ttcgtttctacgaggactgtatt-aacttctacttagcaatttcattattaaaaagga 33313136  T
Q  102 tgtataaa-tttatattggtgccctaggcagttgagttgatttagtaacataaactg-attaaaaacaataaagaattggtttttaagaaaat-tgagag 198  Q
    ||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||| |||||||||  ||||||| ||||||    
T  33313135 tgtgtaaaatttatattggtgccctaggcagttgagttgattttgtaacataaacggaattaaaaataataaaggattggtttt--agaaaatctgagag 33313038  T
Q  199 aagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||  |||||||||||||||||||||||| ||| |||||||||    
T  33313037 aaaaatggttaagtccttcgaatcctctgaagctctcctatg 33312996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 295100 - 294866
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||||| ||||||| |||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  295100 atatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgtgtccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 295001  T
Q  102 tgt-ataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaa 200  Q
    ||| |||||||||||||| ||||| |||||||  ||||| ||| ||||||||| ||| |||||| |||  ||| |||||||||  |||||||||||||||    
T  295000 tgtaataaatttatattgatgcccgaggcagt--agttg-ttttgtaacataagctggttaaaagcaaataaggattggtttt--agaaaattgagagaa 294906  T
Q  201 gtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||| |||||||||||  |||||||||||||    
T  294905 gtatggttaagtctttcgaatcctccgaagttctcctatg 294866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 6967387 - 6967149
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||| | ||||  | ||||||||| ||| ||||||||| | ||||||||| ||  |||| |||||||  |||||||| |||| |||||||    
T  6967387 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaagg 6967288  T
Q  101 atgtataaatttatattg-gtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagag 198  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||| |||| |||| ||| |||||    
T  6967287 atgtataaatttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaataaa-agttgg-ttttcagaatattagagag 6967191  T
Q  199 aagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  6967190 aagtatggttaagaccttcgaatcctctgaagttctcctatg 6967149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 3861913 - 3862151
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||| |  | | || |||||||||||||| | || || | |||||||| |||  |||||||||||||||||||||||||||| |||||||    
T  3861913 atatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacgaggattgttattaacttctacttagcaatttcattatt-aaaagga 3862011  T
Q  102 tgtataaatttatattggtgccctaggcagttgagttga--tttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagag 198  Q
    ||||| || ||  | || |||||||||||||| | ||||  ||| ||||||||||||||||||||||||||||  |||||||||  | |||||| |||||    
T  3862012 tgtattaaatt-caatgatgccctaggcagttcaattgattttttgtaacataaactgattaaaaacaataaaagattggtttt--ataaaattagagag 3862108  T
Q  199 aagtatggttaagtccttcgaatcctctaaagttctcctatgc 241  Q
    ||||||| ||||| ||||||||||||   ||||||||||||||    
T  3862109 aagtatgattaagaccttcgaatccttcgaagttctcctatgc 3862151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 17866359 - 17866597
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||| | ||||  | ||||||||| ||| ||||||||| | ||||||||| ||  |||| |||||||  |||||||| |||| |||||||    
T  17866359 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaagg 17866458  T
Q  101 atgtataaatttatattg-gtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagag 198  Q
    ||||||||||||||||||  ||||||||||||||||| || ||| |||||||||||  |   ||||||||||| | |||| |||| |||| ||| |||||    
T  17866459 atgtataaatttatattgattgccctaggcagttgagctg-ttttgtaacataaacgtaaataaaacaataaa-agttgg-ttttcagaatattagagag 17866555  T
Q  199 aagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||| || |||||||||||||| |||||||||||||    
T  17866556 aagtatggtttagaccttcgaatcctctgaagttctcctatg 17866597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 24783624 - 24783410
Alignment:
Q  27 atcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcatt-attaaaaaggatgtataaatttatattggt-gcc 123  Q
    |||||||||||||| || || || | ||||||||| ||  |||| |||||||  |||||||| || || ||||||||||||||||||||||||| | | |    
T  24783624 atcgaagtaataaataaatttgtatccacgaggaccgttgttaatttctactcggcaatttcttttatcaaaaaggatgtataaatttatattgattgtc 24783525  T
Q  124 ctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtccttcgaatc 222  Q
    | |||||||||||||| ||| |||||||||||| |   ||||||||||| | |||||||| ||||| ||| |||||||||||||||||| |||| |||||    
T  24783524 caaggcagttgagttgtttt-gtaacataaacttaaataaaacaataaa-agttggtttt-aagaatattagagagaagtatggttaagacctttgaatc 24783428  T
Q  223 ctctaaagttctcctatg 240  Q
    |||  |||||||| ||||    
T  24783427 ctccgaagttctcatatg 24783410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 23313382 - 23313504
Alignment:
Q  118 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 215  Q
    ||||||||||| |||||| |||||||  |||||||||||  |||||||||||||||  | |||||||  |||||||| |||||||||||||||||| |||    
T  23313382 ggtgccctaggtagttgaattgatttttgtaacataaacgaattaaaaacaataaaagaatggtttt--agaaaattagagagaagtatggttaagacct 23313479  T
Q  216 tcgaatcctctaaagttctcctatg 240  Q
    | ||||||||  |||||||||||||    
T  23313480 ttgaatcctccgaagttctcctatg 23313504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 17863202 - 17863338
Alignment:
Q  103 gtataaatttatattggt-gccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaa 200  Q
    |||||||||||||||| | |||||||||||||||| || ||| |||||||||||  |   ||||||||||| | |||||||| | ||| ||| |||||||    
T  17863202 gtataaatttatattgattgccctaggcagttgagctgtttt-gtaacataaacgtaaataaaacaataaa-agttggttttca-gaatattagagagaa 17863298  T
Q  201 gtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  17863299 gtatggttaagaccttcgaatcctctgaagttctcctatg 17863338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 9765863 - 9765803
Alignment:
Q  181 ttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||||| |||||||||||||    
T  9765863 ttttaagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 9765803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 23108106 - 23107989
Alignment:
Q  123 cctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtccttcgaa 220  Q
    ||||| ||||||||||||| || |||||||||||  |||||||||||||||  |||||||||  |||||||| ||||||| | |||||||| ||||||||    
T  23108106 cctagacagttgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt--agaaaattagagagaaatgtggttaagaccttcgaa 23108009  T
Q  221 tcctctaaagttctcctatg 240  Q
    || ||  ||| |||||||||    
T  23108008 tcatccgaagctctcctatg 23107989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 17857886 - 17857996
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||| | ||||  | |||||| || ||| ||||||||| | ||||||||| ||  |||| |||||||  |||||||| |||| |||||||    
T  17857886 atatttggcaagtgtaccaaaagctatcgaaatagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaagg 17857985  T
Q  101 atgtataaatt 111  Q
    |||||||||||    
T  17857986 atgtataaatt 17857996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 36843135 - 36843181
Alignment:
Q  194 gagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||||||| |||||||||||||  |||||||||||||    
T  36843135 gagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 36843181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 10101 - 9865
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaaa-agttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggat 102  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  10101 atttggcaagtgaatcaaattcgatcgaagtaataaaagaattcgtttcctcagggactgtatttaacttctacttagcaatttcattattaaaaaggat 10002  T
Q  103 gtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaagt 202  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  10001 gtataaatttatattggtcccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaataattggttttt-agaaaattgagagaagt 9903  T
Q  203 atggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||||||||||||  ||| |||||||||    
T  9902 atggttaagtccttcgaatcctccgaagctctcctatg 9865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 12172212 - 12172031
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaa-gttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||||| |||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12172212 atatttggcaagtgaaccaaattcgatcgaagtaataaaaaagatcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 12172113  T
Q  101 atgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggttt 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12172112 atgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagatttggttt 12172031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 2542122 - 2541886
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||| | |||| || |||||||||||||| | ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2542122 atatttggcaagtgtaccaaagtcaatcgaagtaataaataattcgtatccacgaggactgtatttaacttctactgagcaatttcattattaaaaagga 2542023  T
Q  102 tgtataaatttatattggtgccctaggcagttgagttgatt-tagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaa 200  Q
    ||||| || ||  | |||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||  || |||||||  ||||||| | |||     
T  2542022 tgtattaaatt-caatggtgccctaggcagttgagtttattcttgtaacataaacggattaaaaacaataaaatataggttttt-tgaaaatt-aaagag 2541926  T
Q  201 gtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||| |||||||||||||| |||||||| ||||    
T  2541925 gtatggttaagaccttcgaatcctctgaagttctcttatg 2541886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 647208 - 647447
Alignment:
Q  1 aatatttggcaagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaag 99  Q
    ||||||||||||||| | ||||  | ||||||||| ||| |||||| || | ||||||||| ||  |||| |||||||  |||||||| |||| ||||||    
T  647208 aatatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaag 647307  T
Q  100 gatgtataaatttatattg-gtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gaga 197  Q
    |||||||||||||||||||  ||||||||||| |||||||| ||| |||||||||||  |   ||||||||||| | |||| |||| |||| ||| ||||    
T  647308 gatgtataaatttatattgattgccctaggcatttgagttg-ttttgtaacataaacgtaaataaaacaataaa-agttgg-ttttcagaatattagaga 647404  T
Q  198 gaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||||  ||||||||||||| |||||||||||||    
T  647405 gaagtatggttaagatcttcgaatcctctgaagttctcctatg 647447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 650480 - 650719
Alignment:
Q  1 aatatttggcaagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaag 99  Q
    ||||||||||||||| | ||||  | ||||||||| ||| |||||| || | ||||||||| ||  |||| |||||||  ||||||||  ||| ||||||    
T  650480 aatatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctactcggcaatttctatatcaaaaag 650579  T
Q  100 gatgtataaatttatattg-gtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagag 198  Q
    |||||||||||||||||||  ||||||||||| |||||||| ||| |||||||||||  |   ||||||||||| | |||||||| |  | | | |||||    
T  650580 gatgtataaatttatattgattgccctaggcatttgagttg-ttttgtaacataaacgtaaataaaacaataaa-agttggttttcataatattagagag 650677  T
Q  199 aagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  650678 aagtatggttaagaccttcgaatcctctgaagttctcctatg 650719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 26062762 - 26062937
Alignment:
Q  66 ttaacttctacttagcaatttcattattaaaaaggatgtataaatttatattggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaa 164  Q
    |||||||||||| | ||||||| |||| ||||||||||||| || ||  |  | ||||||||| |||||  ||| | || |||| |||||| ||||||||    
T  26062762 ttaacttctactcaacaatttctttatcaaaaaggatgtattaaattcaag-gttgccctaggtagttggattggtatttgtaaaataaacggattaaaa 26062860  T
Q  165 acaataaagaattggtttttaagaaaatt---gagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||   ||||||||  ||||||||   |||||| ||||||||||| |||| ||||||||  |||||||||||||    
T  26062861 acaataaaagtttggtttt--agaaaattagagagagatgtatggttaagacctttgaatcctccgaagttctcctatg 26062937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 26060641 - 26060589
Alignment:
Q  188 aaaattgagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  26060641 aaaattgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 26060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 11649429 - 11649477
Alignment:
Q  192 ttgagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  11649429 ttgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 11649477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 24193 - 24426
Alignment:
Q  4 atttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatg 103  Q
    |||||||||||| | ||||  | ||||||||| ||| || || |||| |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  24193 atttggcaagtgtaccaaaagctatcgaagtagtaataaatttgtttccacgaggactgtatttaacttctactcaacaatttcattattaaaaaggatg 24292  T
Q  104 tataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattgagagaagta 203  Q
    ||||||||  ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  24293 tataaattattattggtgccctaggcagttgagttgatttagta--ataaactgattaaaaacaataaagaattggttttt-agaaaattgagagaagca 24389  T
Q  204 tggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||||||||||||  ||| |||||||||    
T  24390 tggttaagtccttcgaatcctccgaagctctcctatg 24426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 12575305 - 12575528
Alignment:
Q  1 aatatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    ||||||||||||||| | ||||||| |||||||||||||| | ||||| | ||||||||||||  |||||||||||| | ||| ||||||||||||||||    
T  12575305 aatatttggcaagtgtaccaaattcaatcgaagtaataaataattcgtatccacgaggactgttgttaacttctactcaacaagttcattattaaaaagg 12575404  T
Q  101 atgtataaatttatattggtgccctaggcagttgagttga-tttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagag 198  Q
    |||||| || ||  | |||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||  |||||||||  |||||||| |||||    
T  12575405 atgtattaaatt-caatggtgccctaggcagttgagttgatttttgtaacataaattgattaaaaacaataaaagattggtttt--agaaaattagagag 12575501  T
Q  199 aagtatggttaagtccttcgaatcctc 225  Q
    ||||||||||||| || | ||||||||    
T  12575502 aagtatggttaagaccattgaatcctc 12575528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 14418698 - 14418467
Alignment:
Q  5 tttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgt 104  Q
    ||||||||||||| ||||  | ||||||||| |||| | ||||||  ||||||||| ||  |||||| | ||||||||||||| |||| ||||||||| |    
T  14418698 tttggcaagtgaaccaaag-ctatcgaagtagtaaataattcgttc-cacgaggaccgttgttaactacaacttagcaatttctttatcaaaaaggatat 14418601  T
Q  105 ataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagta 203  Q
     | || ||  || | |||||||||||||||||||| |||  ||||||||||  ||||||||||||||| | |||||||| ||||| ||| ||||||||||    
T  14418600 gttaaattcaatggttgccctaggcagttgagttggtttt-taacataaacaaattaaaaacaataaa-agttggtttt-aagaatattagagagaagta 14418504  T
Q  204 tggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||| | |||||||||||  || ||||||||||    
T  14418503 tggttaagacattcgaatcctccgaatttctcctatg 14418467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 41778864 - 41778987
Alignment:
Q  118 ggtgccctaggcagttgagttga-tttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 215  Q
    |||||||||||||||||| |||| ||| |||||||||||  |||||||||||||||  |||| |||   |||| |||  ||||||||||||||||| |||    
T  41778864 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattgattt---agaagattaaagagaagtatggttaagacct 41778960  T
Q  216 tcgaatcctctaaagttctcctatgct 242  Q
    || |||| ||  |||||||||||||||    
T  41778961 tcaaatcttccgaagttctcctatgct 41778987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 13097100 - 13097022
Alignment:
Q  161 aaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||  ||| |||||  |||||||| |||||||||||||||||| |||||||||||||  ||||| |||||||    
T  13097100 aaaaacaataaaagattagtttt--agaaaattagagagaagtatggttaagaccttcgaatcctccgaagttatcctatg 13097022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 41836418 - 41836466
Alignment:
Q  192 ttgagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  41836418 ttgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 41836466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 10765159 - 10764921
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||| | ||||  | ||||||||| ||| ||||||||| | ||||||||| ||  |||| |||||||  |||||||| |||| |||||||    
T  10765159 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaagg 10765060  T
Q  101 atgtataaatttatattg-gtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagag 198  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||| |||| |||| ||| |||||    
T  10765059 atgtataaatttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaataaa-agttgg-ttttcagaatattagagag 10764963  T
Q  199 aagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  10764962 aagtatggttaagaccttcgaatcctctgaagttctcctatg 10764921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 13493502 - 13493264
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagg 100  Q
    |||||||||||||| | ||||  | ||||||||| ||| ||||||||| | ||||||||| ||  |||| |||||||  |||||||| |||| |||||||    
T  13493502 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaagg 13493403  T
Q  101 atgtataaatttatattg-gtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagag 198  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||  |   ||||||||||| | |||| |||| |||| ||| |||||    
T  13493402 atgtataaatttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaataaaacaataaa-agttgg-ttttcagaatattagagag 13493306  T
Q  199 aagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  13493305 aagtatggttaagaccttcgaatcctctgaagttctcctatg 13493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 1936868 - 1936628
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 101  Q
    |||||||||||||||| ||||||| ||||||||||| || | ||| ||| ||| | |||  |  ||||||||||||| |||||||||||| ||| || ||    
T  1936868 atatttggcaagtgaaccaaattcaatcgaagtaatgaataattcatttccacaatgaccattgttaacttctacttggcaatttcattagtaataacga 1936769  T
Q  102 tgtataaatttatattggt-gccctaggcagttgagttgatt-tagtaacataaactga-ttaaaaacaataaagaattggtttttaagaaaatt-gaga 197  Q
    ||||| || ||  || ||| | |||||||||||||||||||| | ||| |||||||||| ||||||||  ||||   ||||||||  |||||||| ||||    
T  1936768 tgtattaaattcaatgggttgacctaggcagttgagttgattgttgtatcataaactgaattaaaaacggtaaaattttggtttt--agaaaattagaga 1936671  T
Q  198 gaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||||| |||||||||||||  |||||||||||||    
T  1936670 gaagtatggttaagaccttcgaatcctccgaagttctcctatg 1936628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 13496202 - 13495989
Alignment:
Q  27 atcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgtataaatttatattg-gtgccc 124  Q
    |||||||||||||| || ||||| | ||||||||| ||  |||| |||||||  |||||||| |||| |||||||||||||||||||||||||  || ||    
T  13496202 atcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaaggatgtataaatttatattgattgtcc 13496103  T
Q  125 taggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtccttcgaatcc 223  Q
    ||||||||||| ||| ||| |||||||||||  |   ||||||||||  || | | ||||||||| ||| |||||||||||||||||| |||| ||||||    
T  13496102 taggcagttgaattg-ttttgtaacataaacgtaaataaaacaataa--aagttgattttaagaatattagagagaagtatggttaagacctttgaatcc 13496006  T
Q  224 tctaaagttctcctatg 240  Q
    ||  |||||||||||||    
T  13496005 tccgaagttctcctatg 13495989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 34066468 - 34066346
Alignment:
Q  118 ggtgccctaggcagttgagttgattta-gtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 215  Q
    |||||||||||||||||| |||||||  |||||||||||  |||||||||||||||  |||||||||  |||||||| |||||||||||||||||| |||    
T  34066468 ggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggtttt--agaaaattagagagaagtatggttaagacct 34066371  T
Q  216 tcgaatcctctaaagttctcctatg 240  Q
    ||||||||||  |||||||||||||    
T  34066370 tcgaatcctccgaagttctcctatg 34066346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 16190299 - 16190421
Alignment:
Q  117 tggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattga-gagaagtatggttaagtcc 214  Q
    |||||||||||| | |||||||||| || |||||||||||  ||||||||||||||||| ||||||||  |||||||| | |||||||||||||||| ||    
T  16190299 tggtgccctaggaaattgagttgatgtttgtaacataaacgaattaaaaacaataaaga-ttggtttt--agaaaattaaagagaagtatggttaagacc 16190395  T
Q  215 ttcgaatcctctaaagttctcctatg 240  Q
    |||||||||||  |||||||||||||    
T  16190396 ttcgaatcctccgaagttctcctatg 16190421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 32505863 - 32506098
Alignment:
Q  2 atatttggcaagtgaatcaaattcgatcgaagtaataaa-aagttcgttttcacgaggac---tgtat-ttaacttctacttagcaatttcattattaaa 96  Q
    |||||||||||||||| ||||  | |||||||||||||| ||| |||| | |||||||||   || || ||||||||||||   ||||||| |||| |||    
T  32505863 atatttggcaagtgaaccaaaa-ctatcgaagtaataaataagatcgtatccacgaggaccattgcatgttaacttctactcgacaatttctttatcaaa 32505961  T
Q  97 aaggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaattg-a 195  Q
    |||||||||||||||||||||| |||   |||||||||      |||  ||||||||||  ||||||||||||||| | |||||||| ||||| |||  |    
T  32505962 aaggatgtataaatttatattgatgcgtgaggcagttg------ttttctaacataaacgaattaaaaacaataaa-agttggtttt-aagaatattata 32506053  T
Q  196 gagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    ||||||| |||||||| |||||||||||||  |||||||||||||    
T  32506054 gagaagtgtggttaagaccttcgaatcctccgaagttctcctatg 32506098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 39546417 - 39546244
Alignment:
Q  66 ttaacttctacttagcaatttcattattaaaaaggatgtataaatttatattggtgccctaggcagttgagttgattta-gtaacataaactgattaaaa 164  Q
    ||||||| |||| ||||||||||||||  ||| |||||||| || ||  |||| |||||||||||||||  ||| |||  ||||| |||||  |   |||    
T  39546417 ttaacttttactcagcaatttcattatcgaaa-ggatgtattaaattcaattgttgccctaggcagttggattggtttttgtaacgtaaacgcaaataaa 39546319  T
Q  165 acaataaagaattggtttttaagaaaattgagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||| | |||||||| || | | | |||||||||||||||||| |||||||||||||  |||||||| ||||    
T  39546318 acaataaa-agttggttttaaaaatattagagagaagtatggttaagaccttcgaatcctccgaagttctcatatg 39546244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 8435358 - 8435292
Alignment:
Q  119 gtgccctaggcagttgagttga-tttagtaacataaactgattaaaaacaataaagaattggttttta 185  Q
    |||||||||||||||||||||| ||| |||||||||||  | ||||||||||||| | ||||||||||    
T  8435358 gtgccctaggcagttgagttgatttttgtaacataaacataataaaaacaataaa-agttggttttta 8435292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 49716704 - 49716595
Alignment:
Q  27 atcgaagtaataa-aaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgta-taaatttatattgg-tgcc 123  Q
    ||||||||||||| ||||||||| | ||||||||| ||  |||| ||||||||||||| ||| |||  | |||||||||| ||||||| ||| || ||||    
T  49716704 atcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaaggatgtagtaaattt-tatgggttgcc 49716606  T
Q  124 ctaggcagttg 134  Q
    |||||||||||    
T  49716605 ctaggcagttg 49716595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 20 - 251
Alignment:
Q  5 tttggcaagtgaatcaaattcgatcgaagtaataaaaagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgt 104  Q
    ||||||||||||| ||||  | ||||||||| |||| | ||||||  ||||||||| ||  |||||| | ||||||||||||| |||| ||||||||| |    
T  20 tttggcaagtgaaccaaag-ctatcgaagtagtaaataattcgttc-cacgaggaccgttgttaactacaacttagcaatttctttatcaaaaaggatat 117  T
Q  105 ataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagta 203  Q
     | || ||  || | |||||||||||||||||||| |||  ||||||||||  ||||||||||||||| | |||||||| ||||| ||| ||||||||||    
T  118 gttaaattcaatggttgccctaggcagttgagttggtttt-taacataaacaaattaaaaacaataaa-agttggtttt-aagaatattagagagaagta 214  T
Q  204 tggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||| | |||||||||||  || ||||||||||    
T  215 tggttaagacattcgaatcctccgaatttctcctatg 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 5999 - 6054
Alignment:
Q  186 agaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagttctcctatg 240  Q
    |||||||| |||||||||||||||||| |||||||||||||  | |||||||||||    
T  5999 agaaaattagagagaagtatggttaagaccttcgaatcctccgaggttctcctatg 6054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 2649 - 2795
Alignment:
Q  27 atcgaagtaataaa-aagttcgttttcacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgtataaatttatattggtgccct 125  Q
    |||||||||||||| ||| |||| | ||||||||| ||  |||||||||||| ||||||||| ||| | |||||||||||| || ||  |||| |||||     
T  2649 atcgaagtaataaataagatcgtatccacgaggaccgttgttaacttctactcagcaatttcgtta-tcaaaaggatgtattaaattcaattgttgccca 2747  T
Q  126 aggcagtt-gagttgatttagtaacataaactgattaaaaacaataaa 172  Q
    ||| |||| || | | ||| ||||||| ||| |||||||||| |||||    
T  2748 aggaagttggattggtttttgtaacatgaacggattaaaaactataaa 2795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 2742 - 2709
Alignment:
Q  193 tgagagaagtatggttaagtccttcgaatcctct 226  Q
    ||||||||| ||||||||||||||||||||||||    
T  2742 tgagagaagaatggttaagtccttcgaatcctct 2709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 7189 - 7222
Alignment:
Q  193 tgagagaagtatggttaagtccttcgaatcctct 226  Q
    ||||||||| ||||||||||||||||||||||||    
T  7189 tgagagaagaatggttaagtccttcgaatcctct 7222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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