View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18517_high_14 (Length: 237)
Name: NF18517_high_14
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_high_14 |
 | |
|
| [»] scaffold1701 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0101 (2 HSPs) |
| | |
|
| [»] scaffold0270 (1 HSPs) |
| | |
|
| [»] scaffold0323 (2 HSPs) |
| | |
|
| [»] scaffold0304 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0193 (1 HSPs) |
| | |
|
| [»] scaffold0108 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1701 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold1701
Description:
Target: scaffold1701; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 1415 - 1187
Alignment:
| Q |
18 |
cttacttcatttctctttagttatttttactcttttcaccatccccttcttctaccttatgatt-caaaatactgttca-------acacaacaaaattt |
109 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||| |
|
|
| T |
1415 |
cttacttcgtttctctttagttatttttactcttttcaccatccccttcttctaccttacgatttcaaaatactgttcattattcaacaaaacaaaattt |
1316 |
T |
|
| Q |
110 |
-gaaatcttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
1315 |
tgaaatcttcatggcgcgcgtagaaggttcttcttctcaaccaacgaaacaacatgaaccaaatgtcaatctccccataaatactcagtttatggaagaa |
1216 |
T |
|
| Q |
209 |
ccagacgtcagagaagctgaagacagaat |
237 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
1215 |
ccagacgtcagggaagctgaagacagaat |
1187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 14324388 - 14324611
Alignment:
| Q |
19 |
ttacttcatttctctttagttatttttactcttttcaccatccccttcttctaccttatgatt-caaaatactgttca-------acacaacaaaattt- |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||| |
|
|
| T |
14324388 |
ttacttcgtttctctttagttatttttactcttttcaccatccccttcttctaccttacgatttcaaaatactgttcattattcaacaaaacaaaatttt |
14324487 |
T |
|
| Q |
110 |
gaaatcttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
14324488 |
gaaatcttcatggcgcgcgtagaaggttcttcttctcaaccaacaaaacaacatgaaccaaatgtcaatctccccataaatactcagtttatggaagaac |
14324587 |
T |
|
| Q |
210 |
cagacgtcagagaagctgaagaca |
233 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
14324588 |
cagacgtcagggaagctgaagaca |
14324611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 41369331 - 41369554
Alignment:
| Q |
18 |
cttacttcatttctctttagttatttttactcttttcaccatccccttcttctaccttatgattcaaaatactgttcaacacaac------aaaatttga |
111 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| | |||| ||||||||| |
|
|
| T |
41369331 |
cttacttcatttc-ctttagttacttttactcttttcaccatccccttcttctaccttacgatccaaagtactgttcatctcaacgaaccaaaaatttga |
41369429 |
T |
|
| Q |
112 |
aatcttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaacca |
211 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
41369430 |
a-tctttatggcgcgcgtagaaggttcttcttctcaaccaacgaaacaacatgaaacaaatgccaatcttcccataaatactcagtttatggaagaacca |
41369528 |
T |
|
| Q |
212 |
gacgtcagagaagctgaagacagaat |
237 |
Q |
| |
|
||||| | |||||||||||||||||| |
|
|
| T |
41369529 |
gacgttaaagaagctgaagacagaat |
41369554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 22085859 - 22085639
Alignment:
| Q |
18 |
cttacttcatttctctttagttatttttactcttttcaccatccccttcttctaccttatgattcaaaatactgttcaac----ac---aacaaaatttg |
110 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |||||||| || ||||||| || |
|
|
| T |
22085859 |
cttactttgtttctctttagt-atttttactcttttcaccatccccttcttctaacttacgattcaaac-actgttcattgtttactgaaacaaaaattt |
22085762 |
T |
|
| Q |
111 |
aaatcttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaacc |
210 |
Q |
| |
|
||||| |||| | |||| ||||||||| ||||||||||||| ||||||||||||||||| | ||||| | ||||| ||| ||||||||||||||||||| |
|
|
| T |
22085761 |
gaatctccatgactcgcgcagaaggttcctcttctcaaccaacgaaacaacatgaaccaagtgccaattttcccataaatcctcagtttatggaagaacc |
22085662 |
T |
|
| Q |
211 |
agacgtcagagaagctgaagaca |
233 |
Q |
| |
|
||| |||| |||||||||||||| |
|
|
| T |
22085661 |
agatgtcaaagaagctgaagaca |
22085639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 7342142 - 7342362
Alignment:
| Q |
19 |
ttacttcatttctctttagttatttttactcttttcaccatccccttcttctaccttatgattcaaaa-tactgttcaaca--caacaaaa---tttgaa |
112 |
Q |
| |
|
||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| || |||||||| |||||| |
|
|
| T |
7342142 |
ttacttcgcttctccttagtttattttactcttttcaccatccccttcttctaccttgcgattccaaactactgttcatcattcaacaaaaacttttgaa |
7342241 |
T |
|
| Q |
113 |
atcttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccag |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7342242 |
atcttcatggcgcgcgtagaaggctcttcttctcaaccaacgaaacaacatgaaccaaatgtcaatctccccaaaaatactcagtttatggaagaaccag |
7342341 |
T |
|
| Q |
213 |
acgtcagagaagctgaagaca |
233 |
Q |
| |
|
|||| | ||||||||| |||| |
|
|
| T |
7342342 |
acgttaaagaagctgaggaca |
7342362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 14683824 - 14684051
Alignment:
| Q |
18 |
cttacttcatttctctttagttatttttactcttttcaccatccccttcttctaccttatgatt-caaaatactgttca--------acacaacaaaatt |
108 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||| || ||||| ||| |
|
|
| T |
14683824 |
cttacttcatttctctttagtcatttttactattttcaccatccccttcttctaccttacgatttcaaagtactgttcatttattcaacgaaacaacatt |
14683923 |
T |
|
| Q |
109 |
tgaaatcttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaa |
208 |
Q |
| |
|
|||| || ||||||||| | |||||||||||||||||||||||| ||||||||| ||||||||| |||||| ||| | ||||||||||| ||||||||| |
|
|
| T |
14683924 |
tgaa-tcctcatggcgcacatagaaggttcttcttctcaaccaacgaaacaacacgaaccaaatgtcaatcttcccgtaaatactcagttcatggaagaa |
14684022 |
T |
|
| Q |
209 |
ccagacgtcagagaagctgaagacagaat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14684023 |
ccagacgtcagagaagctgaagacagaat |
14684051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 33 - 237
Target Start/End: Complemental strand, 10791948 - 10791738
Alignment:
| Q |
33 |
tttagttatttttactcttttcaccatccccttcttctaccttatgattcaaaatactgttcaacacaac------aaaatttgaaatcttcatggcgcg |
126 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||| ||| ||| ||| || |||| ||| |
|
|
| T |
10791948 |
tttagttacttttactcttttcaccatccccttcttctaccttacgatccaaaatactgttcatctcaacgaaccaaaatttttgaatttttatggtgcg |
10791849 |
T |
|
| Q |
127 |
cgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgtcagagaagct |
226 |
Q |
| |
|
| |||||||||||||||||||| ||||||| ||||| ||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10791848 |
catagaaggttcttcttctcaatcaatgaagcaacaagaaacaaatgccaatctttccataaatactcagtttatggaagaaccagacgtcaaagaagct |
10791749 |
T |
|
| Q |
227 |
gaagacagaat |
237 |
Q |
| |
|
|||||||||| |
|
|
| T |
10791748 |
aaagacagaat |
10791738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 10170484 - 10170382
Alignment:
| Q |
131 |
gaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgtcagagaagctgaag |
230 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| |||||| | | ||| |||| |||||||||||||| || || | ||||||||||| |
|
|
| T |
10170484 |
gaaggttcttcttctcaatcaacaaaacagcatgaaccaaatgtcaatcttctcggaaatcctcaatttatggaagaaccggatgttaaagaagctgaag |
10170385 |
T |
|
| Q |
231 |
aca |
233 |
Q |
| |
|
||| |
|
|
| T |
10170384 |
aca |
10170382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 12845526 - 12845566
Alignment:
| Q |
193 |
tcagtttatggaagaaccagacgtcagagaagctgaagaca |
233 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
12845526 |
tcagtttatagaagaaccagacgtcagggaagcggaagaca |
12845566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 1734768 - 1734545
Alignment:
| Q |
18 |
cttacttcatttctctttagttatttttactcttttcaccatccccttcttctaccttatgattcaaaatactgttcaacacaac------aaaatttga |
111 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||| | ||| ||||||||| |
|
|
| T |
1734768 |
cttacttcgtttct-tttagttacttttactcttttcaccatccccttcttctactttacgatccaaagtactgttcatcttaacgaaccaaaaatttga |
1734670 |
T |
|
| Q |
112 |
aatcttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaacca |
211 |
Q |
| |
|
| | || || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
1734669 |
attttt-atcgcgcgcgtagaaggttcgtcttctcaaccaatgaaacaacatgaaacaaatgccaatctttccataaatactcagtttatggaagaacca |
1734571 |
T |
|
| Q |
212 |
gacgtcagagaagctgaagacagaat |
237 |
Q |
| |
|
||||| | |||||||||||||||||| |
|
|
| T |
1734570 |
gacgttaaagaagctgaagacagaat |
1734545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 46944 - 47164
Alignment:
| Q |
18 |
cttacttcatttctctttagttatttttactcttttcaccatccccttcttctaccttatgattcaaaatactgttcaac----ac---aacaaaatttg |
110 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |||||||| || ||||||| || |
|
|
| T |
46944 |
cttactttgtttctctttagt-atttttactcttttcaccatccccttcttctaacttacgattcaaac-actgttcattgtttactgaaacaaaaattt |
47041 |
T |
|
| Q |
111 |
aaatcttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaacc |
210 |
Q |
| |
|
||||| |||| | |||| ||||||||| ||||||||||||| ||||||||||||||||| | ||||| | ||||| ||| ||||||||||||||||||| |
|
|
| T |
47042 |
gaatctccatgacacgcgcagaaggttcctcttctcaaccaacgaaacaacatgaaccaagtgccaattttcccataaatcctcagtttatggaagaacc |
47141 |
T |
|
| Q |
211 |
agacgtcagagaagctgaagaca |
233 |
Q |
| |
|
||| |||| ||||| |||||||| |
|
|
| T |
47142 |
agatgtcaaagaagatgaagaca |
47164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 51582 - 51802
Alignment:
| Q |
18 |
cttacttcatttctctttagttatttttactcttttcaccatccccttcttctaccttatgattcaaaatactgttcaac----ac---aacaaaatttg |
110 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||||| |||||||| || ||||||| || |
|
|
| T |
51582 |
cttactttgtttctctttagtaatttt-actcttttcaccatccccttcttctaacttacgattcaaac-actgttcatagtttactgaaacaaaaattt |
51679 |
T |
|
| Q |
111 |
aaatcttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaacc |
210 |
Q |
| |
|
||||| |||| | |||| ||||||||| ||||||||||||| ||||||||||||||||| | ||||| | ||||| ||| ||||||||||||||||||| |
|
|
| T |
51680 |
gaatctccatgacacgcgcagaaggttcctcttctcaaccaacgaaacaacatgaaccaagtgccaattttcccataaatcctcagtttatggaagaacc |
51779 |
T |
|
| Q |
211 |
agacgtcagagaagctgaagaca |
233 |
Q |
| |
|
||| |||| ||||| |||||||| |
|
|
| T |
51780 |
agatgtcaaagaagatgaagaca |
51802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0270 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0270
Description:
Target: scaffold0270; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 15979 - 16095
Alignment:
| Q |
117 |
tcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgt |
216 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||| | ||| |||| |||||||||||||| || || |
|
|
| T |
15979 |
tcatgacgcgcgcagaaggttcttcttctcaatcaacgaaacaacatgaaccaaatgtcaatcttcccgtaaattctcaatttatggaagaaccggatgt |
16078 |
T |
|
| Q |
217 |
cagagaagctgaagaca |
233 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16079 |
tagagaagctgaagaca |
16095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 3885 - 3770
Alignment:
| Q |
118 |
catggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgtc |
217 |
Q |
| |
|
|||| |||||| |||||||| |||||||||| ||| ||||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||| | || |
|
|
| T |
3885 |
catgacgcgcgcagaaggttattcttctcaatcaacgaaacaacatgaaccaaatgtcaatcttcccataaatcctcagtttatggaagaaccatatatc |
3786 |
T |
|
| Q |
218 |
agagaagctgaagaca |
233 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
3785 |
aaagaagctgaagaca |
3770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 3970 - 3915
Alignment:
| Q |
39 |
tatttttactcttttcaccatccccttcttctaccttatgattcaaaatactgttca |
95 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||| |
|
|
| T |
3970 |
tatttttactcttttcaccatctccttcttctaccttgcgattc-aaacactgttca |
3915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 22647912 - 22647797
Alignment:
| Q |
118 |
catggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgtc |
217 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||| || || |
|
|
| T |
22647912 |
catgacgcgcgctgaaggttcttcttctcaatcaacgaaacaacatgaaccaaatgtcaatcttcccataaatcctcagtttatggaagaaccggatatc |
22647813 |
T |
|
| Q |
218 |
agagaagctgaagaca |
233 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
22647812 |
aaagaagctgaagaca |
22647797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 24950590 - 24950511
Alignment:
| Q |
18 |
cttacttcatttctctttagtt-atttttactcttttcaccatccccttcttctaccttatga-ttcaaaatactgttca |
95 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
24950590 |
cttacttcgtttctccttagtttatttttactcttttcaccatccccttcttctaccttacgatttcaaaatactgttca |
24950511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 23612159 - 23612358
Alignment:
| Q |
39 |
tatttttactcttttcaccatccccttcttctaccttatgattcaaaatactgttcaacac------aac--aaaatttgaaatcttcatggcgcgcgta |
130 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| | ||| |||||| | || || |||| |||||| |
|
|
| T |
23612159 |
tatttttactcttttcaccatctccttcttctaccttatgattcaaca--ctgttcatcgtttattgaaccaaaaattcgtaa-ctccatgacgcgcgct |
23612255 |
T |
|
| Q |
131 |
gaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgtcagagaagctgaag |
230 |
Q |
| |
|
|||||||||||||||||| ||| ||| | |||||||||||| |||||| ||||| ||| ||||||||||||||||||| || ||| ||||||||||| |
|
|
| T |
23612256 |
gaaggttcttcttctcaatcaactaaatatcatgaaccaaatttcaatcttcccataaatcctcagtttatggaagaaccggatatcaaagaagctgaag |
23612355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 23190904 - 23190949
Alignment:
| Q |
39 |
tatttttactcttttcaccatccccttcttctaccttatgattcaa |
84 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23190904 |
tatttttactcttttcaccatctccttcttctaccttatgattcaa |
23190949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 23615899 - 23616014
Alignment:
| Q |
118 |
catggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgtc |
217 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||| |||||||||||| ||||| |||||| | ||| ||| |||| |||||||||||||| | || |
|
|
| T |
23615899 |
catgacgcgcgctgaaggttcttcttctcaatcaacaaaacaacatgaaacaaatgtcaatcttctcataaatcctcaatttatggaagaaccgggtctc |
23615998 |
T |
|
| Q |
218 |
agagaagctgaagaca |
233 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
23615999 |
aaagaagctgaagaca |
23616014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 22647996 - 22647951
Alignment:
| Q |
39 |
tatttttactcttttcaccatccccttcttctaccttatgattcaa |
84 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
22647996 |
tatttttactctttttaccatctccttcttctaccttacgattcaa |
22647951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 23615814 - 23615856
Alignment:
| Q |
39 |
tatttttactcttttcaccatccccttcttctaccttatgatt |
81 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
23615814 |
tatttttactcttttcaccatctccttcttcttccttacgatt |
23615856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 23191369 - 23191441
Alignment:
| Q |
161 |
catgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgtcagagaagctgaagaca |
233 |
Q |
| |
|
||||||||||||| |||||| ||| | | | ||||||||| ||||||||| || ||| |||||||||||||| |
|
|
| T |
23191369 |
catgaaccaaatatcaatcttcccgtaagtcctcagtttagggaagaaccggatatcaaagaagctgaagaca |
23191441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 233
Target Start/End: Complemental strand, 23495995 - 23495796
Alignment:
| Q |
39 |
tatttttactcttttcaccatccccttcttctaccttatgattcaaaatactgttcaacac------aac--aaaatttgaaatcttcatggcgcgcgta |
130 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||| | ||| |||||||| || || |||| |||||| |
|
|
| T |
23495995 |
tatttttactcttttcaccatctccttcttctaccttacgattcaaca--ctgttcatcgttcattgaaccaaaaatttgtaa-ctccatgacgcgcgct |
23495899 |
T |
|
| Q |
131 |
gaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgtcagagaagctgaag |
230 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||| || ||| ||||| ||||| |
|
|
| T |
23495898 |
gaaggttcttcttctcaatcaacaaaacaacatgaaccaaatgtcaatcttcccataaatcctcagtttatggaagaaccggatatcaaagaagatgaag |
23495799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 14557657 - 14557773
Alignment:
| Q |
117 |
tcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgt |
216 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||| ||||||||||||| | ||| |||||| ||| | ||| |||| ||||||||||||||||| || |
|
|
| T |
14557657 |
tcatgacgcgcgcggaaggttcttcttctcaatcaacgaaacaacatgaaacgaatgtcaatcttcccgtaaattctcaatttatggaagaaccagatgt |
14557756 |
T |
|
| Q |
217 |
cagagaagctgaagaca |
233 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
14557757 |
caaagaagctgaagaca |
14557773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 13277992 - 13278110
Alignment:
| Q |
115 |
cttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagac |
214 |
Q |
| |
|
||||||| |||||| ||||||||||||||| | ||| ||||| |||||||||||| |||||| || | ||| |||| ||||||||||||||||| |
|
|
| T |
13277992 |
cttcatgacgcgcgctgaaggttcttcttcttattcaacaaaacagcatgaaccaaatgtcaatcttccaaaaaatcctcaatttatggaagaaccagat |
13278091 |
T |
|
| Q |
215 |
gtcagagaagctgaagaca |
233 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
13278092 |
gtaaaagaagctgaagaca |
13278110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 6553 - 6669
Alignment:
| Q |
117 |
tcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgt |
216 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||| ||| | ||| |||| ||||||||||||| || | |
|
|
| T |
6553 |
tcatgacgcgcggtgaaggttcttcttctcaatcaacgaaacaacatgaaccaaatgtcaatcttcccgtaaatcctcaatttatggaagaacaggatat |
6652 |
T |
|
| Q |
217 |
cagagaagctgaagaca |
233 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
6653 |
caaagaagctgaagaca |
6669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 79234 - 79036
Alignment:
| Q |
41 |
tttttactcttttcaccatccccttcttctaccttatgattcaaaatactgttcaacac------aac--aaaatttgaaatcttcatggcgcgcgtaga |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||| |||||||| | ||| |||||||| | ||| |||| |||||| || |
|
|
| T |
79234 |
tttttactcttttcaccatctccttcttctaccttacgattcaaac-actgttcatcgttcattgaaccaaaaatttgta-tctccatgacgcgcgctga |
79137 |
T |
|
| Q |
133 |
aggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgtcagagaagctgaagac |
232 |
Q |
| |
|
||||||||| |||||| ||| ||||||| ||||||||||| ||||| || | ||| |||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
79136 |
aggttcttcctctcaatcaacgaaacaagatgaaccaaatgttaatcttcctgtaaatcctcagtttatggaagaaccagatatcaaagaagctgaagac |
79037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 233
Target Start/End: Complemental strand, 40696 - 40578
Alignment:
| Q |
115 |
cttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagac |
214 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| ||| ||||||||||||||||| ||| || ||||| ||| |||| |||||||||||||| || |
|
|
| T |
40696 |
cttcatgacgcgcgctgaaggttcttcttctcaatcaacaaaacaacatgaaccaaacgtcaaacttcccataaatcctcaatttatggaagaaccggat |
40597 |
T |
|
| Q |
215 |
gtcagagaagctgaagaca |
233 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
40596 |
gttaaagaagctgaagaca |
40578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 27533 - 27588
Alignment:
| Q |
115 |
cttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaa |
170 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27533 |
cttcatgacgcgcgctgaaggttcttcttctcaatcaatgaaacaacatgaaccaa |
27588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 43565 - 43450
Alignment:
| Q |
118 |
catggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagacgtc |
217 |
Q |
| |
|
|||| |||||| ||||||||||| |||||| ||| ||||||||||||||| ||| |||||| ||||| || |||||||||| ||||||| || || |
|
|
| T |
43565 |
catgacgcgcgctgaaggttcttcctctcaatcaacgaaacaacatgaacccaatgtcaatcttcccataaaccctcagtttattgaagaactggatatc |
43466 |
T |
|
| Q |
218 |
agagaagctgaagaca |
233 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
43465 |
aaagaagctgaagaca |
43450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 43648 - 43611
Alignment:
| Q |
39 |
tatttttactcttttcaccatccccttcttctacctta |
76 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43648 |
tatttttactcttttcaccatctccttcttctacctta |
43611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 233
Target Start/End: Complemental strand, 57860 - 57742
Alignment:
| Q |
115 |
cttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaaataccaatctccccatcaatactcagtttatggaagaaccagac |
214 |
Q |
| |
|
||||||| |||||| ||||| ||||||||| | ||| |||| | ||||||||||||| |||||| || | ||| |||| |||||||||||||| || |
|
|
| T |
57860 |
cttcatgacgcgcgctgaaggctcttcttcttattcaacgaaatagcatgaaccaaatatcaatcttccaaaaaatcctcaatttatggaagaaccggat |
57761 |
T |
|
| Q |
215 |
gtcagagaagctgaagaca |
233 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
57760 |
gtaaaagaagctgaagaca |
57742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 21529673 - 21529618
Alignment:
| Q |
115 |
cttcatggcgcgcgtagaaggttcttcttctcaaccaatgaaacaacatgaaccaa |
170 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
21529673 |
cttcatgacgcgcgctgaaggttcttcttctcaatcaacaaaacaacatgaaccaa |
21529618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University