View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18517_high_2 (Length: 608)
Name: NF18517_high_2
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 11 - 593
Target Start/End: Complemental strand, 44113423 - 44112850
Alignment:
| Q |
11 |
tattctataattataaacgtttccaacacaatataaactttctggcattgcgtatgaacattattgggtcggcacctttaattagttatatggatgcgat |
110 |
Q |
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| T |
44113423 |
tattctataattataaacgtttccaacacaatgtaaactttctggcattgcatatgaacattattgggtcggcacctttaattagttatatggatgcaat |
44113324 |
T |
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| Q |
111 |
taagttccatcaattgcaaagtttgataaaaatattagaaacgaaattaagaaaatttaaggatttctcaatgtgtttacatactcaattgaacaaaaat |
210 |
Q |
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| T |
44113323 |
taagttccatcaattgcaaagtttgataaaaatattagaaacgaaattaagaaaatttaaggatttctcaatgtgt----atactcaattgaacaaaaat |
44113228 |
T |
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| Q |
211 |
tatatttaaacatttataccatgaacacaatggtttacaaaacagaatagcttttcaacaggttgcctaaacacatacaaataagggtttataatttaaa |
310 |
Q |
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| T |
44113227 |
tatatttaaacatttatacaatgaacacaatggtttacataacaatattgcttttcaacaggttgcctaaacacatacaaataagggtttataatttaaa |
44113128 |
T |
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| Q |
311 |
tatcaagagtttagctttgcattaaaatctttgtattcgttatatacaatcagtacattgcaagagtctgtctgtctaatgttctgcttttgatcgtggg |
410 |
Q |
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| T |
44113127 |
tatcaagagtttagctttgcattaaaatctttgtcttcattatatacaatcagtacattgcaagagtct----gtctaatgttctgtttttgatcgtggg |
44113032 |
T |
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| Q |
411 |
tggtgtcacctgaataattgtgttatgaacctgttcttcaatatgcgttaattaaaaaacttatgaagtttgccaattaatgtaaaatctgaattgtcag |
510 |
Q |
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| T |
44113031 |
tggtgtcacctgaataattgtgttatgaacttgttcttcaatatgcgttaattaaaaatcttatgaagtttgccaattaatgtaaaatctgaattgtcag |
44112932 |
T |
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| Q |
511 |
aaaccgaactacacatttttagactcaaaacatgtataagttatgaattgcgagcaccctttttactttttcttcataattta |
593 |
Q |
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| T |
44112931 |
aaaccgaactacacatttttagactc-aaacatgtataagttatgaattgcgagcaccctttttacttttttttcataattta |
44112850 |
T |
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