View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18517_high_5 (Length: 392)
Name: NF18517_high_5
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 9659319 - 9659694
Alignment:
| Q |
1 |
actccatgattagaattgttgctattctcaacctttttccttctagttaaaaacttccatgaacatgatgaaccttgtcctccatagttactaacactac |
100 |
Q |
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| T |
9659319 |
actccatgattagaattgttgctattctcaacctttttccttctagttaaaaacttccatgaacatgatgaaccttgtcctccatggttactaccactac |
9659418 |
T |
|
| Q |
101 |
cttcatgtgaaccatcaccaataaaacccatcaaaaatgtccctcnnnnnnnccttttcttaccgaacaagtaatatatcaaaaatggtttcagacatca |
200 |
Q |
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| T |
9659419 |
cttcatgtgaaccatcaccaataaaacccatcaaaaatgtccctctttttttccttttcttaccgaacaagtaatatatcaaaaatggtttcagacatca |
9659518 |
T |
|
| Q |
201 |
aagtgaagtgaataattatagaaaacaag---aattatagtggagtgtgataagggaaataactatatttcattttcaagtttatttattattataatga |
297 |
Q |
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| T |
9659519 |
aagtgaagtgaataattatagaaaacaagaataatcatagtggagtgtgataagggaaataactatatttc------------atttattattataatga |
9659606 |
T |
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| Q |
298 |
catgtgtgactaatttgtggatgtgaaggtttataataaatgaaacaaagaaaatgttgtcccactttttgaatggttctgatgatgt |
385 |
Q |
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| T |
9659607 |
catgtgtgaataatttgtggatgtgaaggtttaaaataaatgaaacagagaaaatgttgtcccactttttgaatggttctggtgatgt |
9659694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 9642240 - 9642350
Alignment:
| Q |
1 |
actccatgattagaattgttgctattctcaacctttttccttctagttaaaaacttccatgaacatgatgaaccttgtcctccatagttactaacactac |
100 |
Q |
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| T |
9642240 |
actccatgatgagaattgctgctattgtcaacctttttccttctagttaaaaacctccatgaacatgatgaaccttgtcctccataatcactaccactac |
9642339 |
T |
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| Q |
101 |
cttcatgtgaa |
111 |
Q |
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| || |||||| |
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| T |
9642340 |
cctcttgtgaa |
9642350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 9619939 - 9619997
Alignment:
| Q |
28 |
tcaacctttttccttctagttaaaaacttccatgaacatgatgaaccttgtcctccata |
86 |
Q |
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| T |
9619939 |
tcaacctttttccttcttgttaaaaacctccatgaacatgatgaaccttgtccaccata |
9619997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 9634119 - 9634164
Alignment:
| Q |
47 |
ttaaaaacttccatgaacatgatgaaccttgtcctccatagttact |
92 |
Q |
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| T |
9634119 |
ttaaaaaactccatgaacatgatgaaccttgttctccataattact |
9634164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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